Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 619 |
| Acc36I | ACCTGC | 1 cut(s) | 619 |
| AccBSI | CCGCTC | 1 cut(s) | 524 |
| AccII | CGCG | 1 cut(s) | 170 |
| AciI | CCGC | 3 cut(s) | 108, 168, 522 |
| AclI | AACGTT | 1 cut(s) | 205 |
| AclWI | GGATC | 4 cut(s) | 307, 469, 499, 881 |
| AcsI | RAATTY | 4 cut(s) | 139, 418, 844, 1057 |
| AfaI | GTAC | 2 cut(s) | 276, 897 |
| AflIII | ACRYGT | 1 cut(s) | 996 |
| AgsI | TTSAA | 7 cut(s) | 713, 952, 1054, 1131, 1169, 1184, 1264 |
| AjnI | CCWGG | 1 cut(s) | 487 |
| AluBI | AGCT | 6 cut(s) | 392, 485, 720, 788, 988, 1187 |
| AluI | AGCT | 6 cut(s) | 392, 485, 720, 788, 988, 1187 |
| Alw26I | GTCTC | 3 cut(s) | 84, 119, 828 |
| AlwI | GGATC | 4 cut(s) | 307, 469, 499, 881 |
| AoxI | GGCC | 1 cut(s) | 409 |
| ApeKI | GCWGC | 7 cut(s) | 356, 446, 482, 697, 788, 1087, 1187 |
| ApoI | RAATTY | 4 cut(s) | 139, 418, 844, 1057 |
| AspS9I | GGNCC | 1 cut(s) | 409 |
| AsuC2I | CCSGG | 2 cut(s) | 459, 1287 |
| AsuHPI | GGTGA | 6 cut(s) | 294, 456, 498, 561, 1261, 1293 |
| AxyI | CCTNAGG | 2 cut(s) | 924, 1116 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 528, 561 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 893, 925, 984, 1016 |
| BbsI | GAAGAC | 2 cut(s) | 999, 1252 |
| BbvI | GCAGC | 7 cut(s) | 343, 433, 494, 709, 775, 1099, 1174 |
| BccI | CCATC | 4 cut(s) | 400, 898, 1036, 1246 |
| BceAI | ACGGC | 1 cut(s) | 481 |
| BciT130I | CCWGG | 1 cut(s) | 489 |
| BclI | TGATCA | 1 cut(s) | 1096 |
| BcnI | CCSGG | 2 cut(s) | 459, 1287 |
| BcoDI | GTCTC | 3 cut(s) | 84, 119, 828 |
| BfaI | CTAG | 2 cut(s) | 989, 1158 |
| BfmI | CTRYAG | 1 cut(s) | 339 |
| BfuAI | ACCTGC | 1 cut(s) | 619 |
| BisI | GCNGC | 8 cut(s) | 168, 357, 447, 483, 698, 789, 1088, 1188 |
| BlsI | GCNGC | 8 cut(s) | 169, 358, 448, 484, 699, 790, 1089, 1189 |
| Bme1390I | CCNGG | 3 cut(s) | 459, 489, 1287 |
| BmgT120I | GGNCC | 1 cut(s) | 409 |
| BmrFI | CCNGG | 3 cut(s) | 459, 489, 1287 |
| BmsI | GCATC | 4 cut(s) | 92, 527, 799, 948 |
| BpiI | GAAGAC | 2 cut(s) | 999, 1252 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 111, 143 |
| BpmI | CTGGAG | 3 cut(s) | 32, 471, 666 |
| BpuMI | CCSGG | 2 cut(s) | 459, 1287 |
| BsaAI | YACGTR | 1 cut(s) | 1004 |
| BsaI | GGTCTC | 1 cut(s) | 828 |
| BsaJI | CCNNGG | 2 cut(s) | 816, 1285 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 796, 826, 863, 893 |
| Bse1I | ACTGG | 5 cut(s) | 49, 111, 179, 433, 838 |
| Bse21I | CCTNAGG | 2 cut(s) | 924, 1116 |
| Bse3DI | GCAATG | 1 cut(s) | 387 |
| BseBI | CCWGG | 1 cut(s) | 489 |
| BseDI | CCNNGG | 2 cut(s) | 816, 1285 |
| BseGI | GGATG | 3 cut(s) | 518, 963, 1261 |
| BseMI | GCAATG | 1 cut(s) | 387 |
| BseMII | CTCAG | 5 cut(s) | 130, 285, 791, 915, 1107 |
| BseNI | ACTGG | 5 cut(s) | 49, 111, 179, 433, 838 |
| BseRI | GAGGAG | 2 cut(s) | 30, 941 |
| BseXI | GCAGC | 7 cut(s) | 343, 433, 494, 709, 775, 1099, 1174 |
| BsgI | GTGCAG | 1 cut(s) | 716 |
| Bsh1236I | CGCG | 1 cut(s) | 170 |
| BshFI | GGCC | 1 cut(s) | 411 |
| BsiSI | CCGG | 2 cut(s) | 458, 1287 |
| BslFI | GGGAC | 2 cut(s) | 817, 1043 |
| BsmAI | GTCTC | 3 cut(s) | 84, 119, 828 |
| BsmBI | CGTCTC | 1 cut(s) | 84 |
| BsmFI | GGGAC | 2 cut(s) | 817, 1043 |
| BsnI | GGCC | 1 cut(s) | 411 |
| Bso31I | GGTCTC | 1 cut(s) | 828 |
| Bsp1407I | TGTACA | 1 cut(s) | 895 |
| Bsp143I | GATC | 6 cut(s) | 299, 461, 491, 886, 1063, 1096 |
| Bsp19I | CCATGG | 1 cut(s) | 816 |
| BspACI | CCGC | 3 cut(s) | 108, 168, 522 |
| BspANI | GGCC | 1 cut(s) | 411 |
| BspCNI | CTCAG | 5 cut(s) | 129, 284, 790, 916, 1108 |
| BspFNI | CGCG | 1 cut(s) | 170 |
| BspMAI | CTGCAG | 1 cut(s) | 343 |
| BspMI | ACCTGC | 1 cut(s) | 619 |
| BspPI | GGATC | 4 cut(s) | 307, 469, 499, 881 |
| BspTNI | GGTCTC | 1 cut(s) | 828 |
| BsrBI | CCGCTC | 1 cut(s) | 524 |
| BsrDI | GCAATG | 1 cut(s) | 387 |
| BsrGI | TGTACA | 1 cut(s) | 895 |
| BsrI | ACTGG | 5 cut(s) | 49, 111, 179, 433, 838 |
| BssECI | CCNNGG | 2 cut(s) | 816, 1285 |
| BssMI | GATC | 6 cut(s) | 299, 461, 491, 886, 1063, 1096 |
| BssT1I | CCWWGG | 1 cut(s) | 816 |
| Bst2UI | CCWGG | 1 cut(s) | 489 |
| Bst4CI | ACNGT | 4 cut(s) | 233, 403, 694, 895 |
| Bst6I | CTCTTC | 1 cut(s) | 21 |
| BstAUI | TGTACA | 1 cut(s) | 895 |
| BstBAI | YACGTR | 1 cut(s) | 1004 |
| BstC8I | GCNNGC | 1 cut(s) | 214 |
| BstDEI | CTNAG | 7 cut(s) | 116, 271, 747, 777, 924, 1067, 1116 |
| BstDSI | CCRYGG | 1 cut(s) | 816 |
| BstF5I | GGATG | 3 cut(s) | 518, 963, 1261 |
| BstFNI | CGCG | 1 cut(s) | 170 |
| BstKTI | GATC | 6 cut(s) | 302, 464, 494, 889, 1066, 1099 |
| BstMAI | GTCTC | 3 cut(s) | 84, 119, 828 |
| BstMBI | GATC | 6 cut(s) | 299, 461, 491, 886, 1063, 1096 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 338, 584, 593 |
| BstNI | CCWGG | 1 cut(s) | 489 |
| BstNSI | RCATGY | 1 cut(s) | 1000 |
| BstSCI | CCNGG | 3 cut(s) | 457, 487, 1285 |
| BstSFI | CTRYAG | 1 cut(s) | 339 |
| BstSNI | TACGTA | 1 cut(s) | 1004 |
| BstUI | CGCG | 1 cut(s) | 170 |
| BstV1I | GCAGC | 7 cut(s) | 343, 433, 494, 709, 775, 1099, 1174 |
| BstV2I | GAAGAC | 2 cut(s) | 999, 1252 |
| BstX2I | RGATCY | 1 cut(s) | 886 |
| BstYI | RGATCY | 1 cut(s) | 886 |
| Bsu36I | CCTNAGG | 2 cut(s) | 924, 1116 |
| BsuRI | GGCC | 1 cut(s) | 411 |
| BtgI | CCRYGG | 1 cut(s) | 816 |
| BtgZI | GCGATG | 1 cut(s) | 68 |
| BtsCI | GGATG | 3 cut(s) | 518, 963, 1261 |
| BtsI | GCAGTG | 1 cut(s) | 1027 |
| BtsIMutI | CAGTG | 3 cut(s) | 157, 864, 1027 |
| BveI | ACCTGC | 1 cut(s) | 619 |
| Cac8I | GCNNGC | 1 cut(s) | 214 |
| Cfr13I | GGNCC | 1 cut(s) | 409 |
| Csp6I | GTAC | 2 cut(s) | 275, 896 |
| CviAII | CATG | 3 cut(s) | 351, 817, 997 |
| CviQI | GTAC | 2 cut(s) | 275, 896 |
| DdeI | CTNAG | 7 cut(s) | 116, 271, 747, 777, 924, 1067, 1116 |
| DpnI | GATC | 6 cut(s) | 301, 463, 493, 888, 1065, 1098 |
| DpnII | GATC | 6 cut(s) | 299, 461, 491, 886, 1063, 1096 |
| Eam1104I | CTCTTC | 1 cut(s) | 21 |
| EarI | CTCTTC | 1 cut(s) | 21 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Eco105I | TACGTA | 1 cut(s) | 1004 |
| Eco130I | CCWWGG | 1 cut(s) | 816 |
| Eco31I | GGTCTC | 1 cut(s) | 828 |
| Eco32I | GATATC | 1 cut(s) | 1272 |
| Eco81I | CCTNAGG | 2 cut(s) | 924, 1116 |
| EcoRI | GAATTC | 1 cut(s) | 418 |
| EcoRII | CCWGG | 1 cut(s) | 487 |
| EcoRV | GATATC | 1 cut(s) | 1272 |
| EcoT14I | CCWWGG | 1 cut(s) | 816 |
| ErhI | CCWWGG | 1 cut(s) | 816 |
| Esp3I | CGTCTC | 1 cut(s) | 84 |
| FaeI | CATG | 3 cut(s) | 354, 820, 1000 |
| FaiI | YATR | 7 cut(s) | 352, 378, 663, 818, 998, 1010, 1193 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 205, 237, 649, 681 |
| FaqI | GGGAC | 2 cut(s) | 817, 1043 |
| FatI | CATG | 3 cut(s) | 350, 816, 996 |
| FbaI | TGATCA | 1 cut(s) | 1096 |
| Fnu4HI | GCNGC | 8 cut(s) | 168, 357, 447, 483, 698, 789, 1088, 1188 |
| FokI | GGATG | 3 cut(s) | 505, 970, 1268 |
| Fsp4HI | GCNGC | 8 cut(s) | 168, 357, 447, 483, 698, 789, 1088, 1188 |
| FspBI | CTAG | 2 cut(s) | 989, 1158 |
| GluI | GCNGC | 8 cut(s) | 168, 357, 447, 483, 698, 789, 1088, 1188 |
| GsuI | CTGGAG | 3 cut(s) | 32, 471, 666 |
| HaeIII | GGCC | 1 cut(s) | 411 |
| HapII | CCGG | 2 cut(s) | 458, 1287 |
| Hin1II | CATG | 3 cut(s) | 354, 820, 1000 |
| HincII | GTYRAC | 1 cut(s) | 259 |
| HindII | GTYRAC | 1 cut(s) | 259 |
| HindIII | AAGCTT | 1 cut(s) | 390 |
| HinfI | GANTC | 9 cut(s) | 66, 147, 159, 172, 566, 703, 937, 1046, 1210 |
| HpaII | CCGG | 2 cut(s) | 458, 1287 |
| HphI | GGTGA | 6 cut(s) | 294, 456, 498, 561, 1261, 1293 |
| Hpy166II | GTNNAC | 2 cut(s) | 259, 910 |
| Hpy188I | TCNGA | 6 cut(s) | 101, 119, 780, 891, 1101, 1276 |
| Hpy188III | TCNNGA | 5 cut(s) | 144, 236, 683, 1076, 1148 |
| Hpy8I | GTNNAC | 2 cut(s) | 259, 910 |
| HpyAV | CCTTC | 4 cut(s) | 357, 540, 612, 764 |
| HpyCH4III | ACNGT | 4 cut(s) | 233, 403, 694, 895 |
| HpyCH4IV | ACGT | 3 cut(s) | 205, 1003, 1152 |
| HpyCH4V | TGCA | 9 cut(s) | 185, 212, 341, 380, 385, 449, 551, 697, 1226 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 338, 584, 593 |
| HpyF3I | CTNAG | 7 cut(s) | 116, 271, 747, 777, 924, 1067, 1116 |
| HpySE526I | ACGT | 3 cut(s) | 205, 1003, 1152 |
| Hsp92II | CATG | 3 cut(s) | 354, 820, 1000 |
| Ksp22I | TGATCA | 1 cut(s) | 1096 |
| Kzo9I | GATC | 6 cut(s) | 299, 461, 491, 886, 1063, 1096 |
| LmnI | GCTCC | 4 cut(s) | 110, 490, 785, 817 |
| Lsp1109I | GCAGC | 7 cut(s) | 343, 433, 494, 709, 775, 1099, 1174 |
| LweI | GCATC | 4 cut(s) | 92, 527, 799, 948 |
| MaeI | CTAG | 2 cut(s) | 989, 1158 |
| MaeII | ACGT | 3 cut(s) | 205, 1003, 1152 |
| MaeIII | GTNAC | 4 cut(s) | 6, 192, 676, 999 |
| MalI | GATC | 6 cut(s) | 301, 463, 493, 888, 1065, 1098 |
| MbiI | CCGCTC | 1 cut(s) | 524 |
| MboI | GATC | 6 cut(s) | 299, 461, 491, 886, 1063, 1096 |
| MboII | GAAGA | 9 cut(s) | 8, 213, 237, 644, 698, 896, 913, 1004, 1252 |
| MflI | RGATCY | 1 cut(s) | 886 |
| MluCI | AATT | 7 cut(s) | 130, 139, 266, 373, 418, 844, 1057 |
| MlyI | GAGTC | 3 cut(s) | 153, 156, 712 |
| MmeI | TCCRAC | 2 cut(s) | 861, 914 |
| MseI | TTAA | 4 cut(s) | 53, 368, 396, 795 |
| MspI | CCGG | 2 cut(s) | 458, 1287 |
| MspR9I | CCNGG | 3 cut(s) | 459, 489, 1287 |
| MvaI | CCWGG | 1 cut(s) | 489 |
| MvnI | CGCG | 1 cut(s) | 170 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 338, 584, 593 |
| NciI | CCSGG | 2 cut(s) | 459, 1287 |
| NcoI | CCATGG | 1 cut(s) | 816 |
| NdeII | GATC | 6 cut(s) | 299, 461, 491, 886, 1063, 1096 |
| NlaIII | CATG | 3 cut(s) | 354, 820, 1000 |
| NmuCI | GTSAC | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 1000 |
| PaqCI | CACCTGC | 1 cut(s) | 619 |
| PciI | ACATGT | 1 cut(s) | 996 |
| PfeI | GAWTC | 6 cut(s) | 66, 172, 566, 937, 1046, 1210 |
| PfoI | TCCNGGA | 2 cut(s) | 457, 487 |
| PkrI | GCNGC | 8 cut(s) | 169, 358, 448, 484, 699, 790, 1089, 1189 |
| PleI | GAGTC | 3 cut(s) | 153, 155, 711 |
| PpsI | GAGTC | 3 cut(s) | 153, 155, 711 |
| Ppu21I | YACGTR | 1 cut(s) | 1004 |
| PscI | ACATGT | 1 cut(s) | 996 |
| Psp1406I | AACGTT | 1 cut(s) | 205 |
| Psp6I | CCWGG | 1 cut(s) | 487 |
| PspGI | CCWGG | 1 cut(s) | 487 |
| PspPI | GGNCC | 1 cut(s) | 409 |
| PstI | CTGCAG | 1 cut(s) | 343 |
| PsuI | RGATCY | 1 cut(s) | 886 |
| RsaI | GTAC | 2 cut(s) | 276, 897 |
| RsaNI | GTAC | 2 cut(s) | 275, 896 |
| SaqAI | TTAA | 4 cut(s) | 53, 368, 396, 795 |
| SatI | GCNGC | 8 cut(s) | 168, 357, 447, 483, 698, 789, 1088, 1188 |
| Sau3AI | GATC | 6 cut(s) | 299, 461, 491, 886, 1063, 1096 |
| Sau96I | GGNCC | 1 cut(s) | 409 |
| SchI | GAGTC | 3 cut(s) | 153, 156, 712 |
| ScrFI | CCNGG | 3 cut(s) | 459, 489, 1287 |
| SfaNI | GCATC | 4 cut(s) | 92, 527, 799, 948 |
| SfcI | CTRYAG | 1 cut(s) | 339 |
| SnaBI | TACGTA | 1 cut(s) | 1004 |
| Sse9I | AATT | 7 cut(s) | 130, 139, 266, 373, 418, 844, 1057 |
| SsiI | CCGC | 3 cut(s) | 108, 168, 522 |
| SspMI | CTAG | 2 cut(s) | 989, 1158 |
| StyD4I | CCNGG | 3 cut(s) | 457, 487, 1285 |
| StyI | CCWWGG | 1 cut(s) | 816 |
| TaaI | ACNGT | 4 cut(s) | 233, 403, 694, 895 |
| TaiI | ACGT | 3 cut(s) | 208, 1006, 1155 |
| TaqI | TCGA | 3 cut(s) | 157, 227, 1036 |
| TasI | AATT | 7 cut(s) | 130, 139, 266, 373, 418, 844, 1057 |
| TatI | WGTACW | 1 cut(s) | 895 |
| TauI | GCSGC | 1 cut(s) | 170 |
| TfiI | GAWTC | 6 cut(s) | 66, 172, 566, 937, 1046, 1210 |
| Tru1I | TTAA | 4 cut(s) | 53, 368, 396, 795 |
| Tru9I | TTAA | 4 cut(s) | 53, 368, 396, 795 |
| TscAI | CASTG | 3 cut(s) | 157, 864, 1027 |
| TseFI | GTSAC | 1 cut(s) | 6 |
| TseI | GCWGC | 7 cut(s) | 356, 446, 482, 697, 788, 1087, 1187 |
| Tsp45I | GTSAC | 1 cut(s) | 6 |
| TspDTI | ATGAA | 4 cut(s) | 339, 431, 579, 732 |
| TspRI | CASTG | 3 cut(s) | 157, 864, 1027 |
| XapI | RAATTY | 4 cut(s) | 139, 418, 844, 1057 |
| XceI | RCATGY | 1 cut(s) | 1000 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 763 |
| XspI | CTAG | 2 cut(s) | 989, 1158 |