Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

71012828 .. 71018634

Gene Structure 5807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0524100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGAATCCCTCCACCCTCCTCGCCCCTTCTTCTTCAACGCCGCAGCGTTCAATTCTCCAGTCGCAGTTCCTCAACCCTATCCCTCTCCGCGCCACCACCTCCGCAACCGTCCCACGGCGCCGTTTCAGGGTCTCATTTCCCCGCAACTCGGCTGCCCAGTCGGACGGCGCCACGTCACCACCGCCGCCGACAGATGTCTTTGGGGGCAAGAGAGAGCTCACTGGAGTCCAGCCCCTTGTGGAGAAGCTTTCGCCGCCGCTAAGGTTGGTGACGTCGGCAATTGTGTTCGCCGGAGCGGTGGCTGCGGGTTACGGGTTGGGGCTTCGGGTCGGGAAGACCCAGAACACCGCGTTGGGCGGGGCTGTGGTGCTCGGAGCTGCTGGTGGAGCCGCTGTGTACGCTTTGAACGCCAGCGCTCCGGCCGTCGCCGCCGTCGATTTGCACAACTACGTTGCCGGCCGGGATGACCCCAGAGCTGTGAAGAAGGAGGATATTGAAGGCATTGCGAAAAAGTATGGTGTGAGCAAGCAAGATGAGGCATTCAATGCGGAGCTCTGTGATTTATACTGCCGGTTCGTCACTTCAGTGATACCTCCAGGAAGTGAAGAACTTAAAGGGGATGAAGTCGATACCATAGTGAACTTCAAAAATGCTCTGGGCATGGATGACCCTGAAGCAGCTTCAATGCACATGGAGATTGGTAGACGCATTTTCAGACAGAGGCTTGAGACTGGGGACCGTGAAGGTGATCTAGAGCAGCGTCGGGCATTTCAGAAGCTGATATATGTTTCAACACTTGTGTTTGGAGATGCTTCATCTTTCCTCTTGCCTTGGAAGCGTGTTTTCAAGGTCACCGATTCCCAGGTGGAGATTGCTATCCGTGATAATGCACAGAGGTTATATGCTTCCAAGCTAAAATCAGCTGGCAGAGATATTGATGCAGAGCCACTTGTTAGGCTTAGAGAAGCACAACTCATGTATCGGCTTTCTGATGAGAATGCTGCAGACTTGTTCAAGGAGCACACAAGAAAACTGGCCGAGGAAAATATTTCATCAGCACTCAATATACTCAAGTCCAGAACAAGAACAGCGGGGGGTGTCACACGAGTTGTGGAAGAGCTTGATAAGGTTCTAGCACTCAATAGTTTGCTCATCTCACTAAAGAACCAGCCAGATGCTGTTCGCTTTGCACCTGGGGTTGGGCCAATTTCTTTACTTGGGGGTGATTATTATGGTGATAGAAAGATAGATGACTTGAAGCACCTTTATAGAGCATATGTCACAGATTCTTTATCAGGGGGTCGCTTGGAAGAGAATAAGCTTTCTGCATTGAATCAGCTTAAGAATATATTTGGGTTAGGCAACCGAGAGGCAGAAACCATTGTGCTAGATGTTACTTCAAAGGTATACCGTAAACGTCTTTCACAGGCTGTTAGTGGGGGTGATTTGGAAGCAGCAGATAGCAAAGCAGCCTTCCTTCAAGGTATCTGTGAGGAGCTGCACTTCGATCCACAGAAGGCGAGTGGGATTCATGAAGAAATTTACCGGCAGAAGCTTCAGCTGTGTGTTGCTGATGGAGAGCTTGATGAGGAGGATGTTGCTGCCTTGTTAAGGCTGCGGGTCTTGCTATGTATACCAAAGGAAACTGTTGAAGCTGCCCATACAGAGATCTGTGGCAGTTTGTTTGAAAAGGTTGTGAAGGATGCAATTGCATCTGGTGTTGATGGATACGACGCTGATGTGAAATTAGCTGTCAGAAAGGCAGCCCATGGCTTGCGATTGACTAGGGAGGCAGCCATGTCTATTGCAAGCAAGACAGTCAGAAGGATTTTTGTTAACTACGTAAAACGAGCACGGGCAGCTGGGAACCGTACTGAGGCTGCAAAAGAACTTAAAAAGCTGATAGCCTTCAACACATTGGTTGTGACTGAATTAGTGGCAGACATAAAGGGGGAATCATCTGATACATCGACAGATGAGCCAACAAAGGAGAAAGAAGTAAAAGAGGAAGAAGAAACGGTCCCAGAGGATGAGGAATGGGAATCTATTCAGACACTTAGAAAAATAAGACCTGACAAGGAACTTGCAGCGAAGTTGGGGAAGCCTGGTCAGACTGAGATAACTCTGAAAGATGACCTGCAAGAAAGAGAGAGGACTGACCTGTACAAAACATACTTGCTTTTTTGTATAACTGGAGAAGTGAAGAAGATTCCATTTGGTGCTCAGATCACTACAAAGAAGGATGATTCAGAGTATCTGCTACTAAATCAGCTTGGGGCAATATTGGGTTTGAGCACTACAGAGGTAGTGGATGTACACAGGAGCCTGGCCGAGCAAGCTTTCAGGCAACAAGCAGAGGTGATTTTAGCTGATGGGCAATTGACAAAAGCCAGGGTAGAGCAACTTGATGAGTTGCAGAAGCAAGTTGGGTTGCCTCCACAATATGTTCAAAAGATAATAAAGAGCATAACAACTACAAAAATGGCGTCTGCCATTGAAACAGCTATTGGCCAGGGGAGGCTTAATATTAAGCAGATAAGAGAACTTAAACAATCAAGTGTTGATTTAGAAAGCATGATATCTGAGAGCTTGCGAGAGAACCTATTCAAAAAAACTGTTGATGAGATATTCTCATCAGGCACTGGAGAGTTTGATGAGGAGGAAGTCTATGAGAAAATCCCAGCGGATCTCAACATTAATGTCAAGAAGGCAAGAGGTGTAGTTCTGGAGCTTGCAAAGAGCAGATTATCTAATTCACTGATTCAAGCTGTGTCACTTTTGCGGCAGAGAAATCGTCAAGGAGTGGTTTCTTCTCTTAATGACATGCTGGCTTGTGATAAAGCTGTGCCTGCCCAGCCACTTTCATGGGATGTTCCAGAGGAGCTGGCTGATCTGTTTGCCATATACCTGAAAAGGGACCCAGCACCTGAGAAACTGTCACGCTTGCAGTATCTGCTGGGCATTAATGATTCCATGGCAGCTTCCCTCGGGGAGATGGGAGACAGATTATCCCCTGCTGGTGCAGAGGAAAAGTTTGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

1014

Amino Acids

111.42

Weight (kDa)

5.8

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tic110	PF16940	73 - 646	1.1e-290	Chloroplast envelope transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	2145
AccB1I	GGYRCC	2 cut(s)	117, 167
AccBSI	CCGCTC	1 cut(s)	296
AccI	GTMKAC	3 cut(s)	703, 1407, 1633
AccII	CGCG	2 cut(s)	90, 350
AclWI	GGATC	2 cut(s)	1502, 2694
AcoI	YGGCCR	5 cut(s)	420, 457, 1035, 2328, 2509
AcsI	RAATTY	1 cut(s)	1539
AcuI	CTGAAG	3 cut(s)	567, 693, 1541
AcyI	GRCGYC	4 cut(s)	118, 168, 272, 2486
AfaI	GTAC	4 cut(s)	398, 1873, 2165, 2316
AfeI	AGCGCT	1 cut(s)	415
AfiI	CCNNNNNNNGG	7 cut(s)	114, 127, 148, 1199, 1611, 1876, 2914
AflII	CTTAAG	1 cut(s)	1340
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	7 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511
AjuI	GAANNNNNNNTTGG	4 cut(s)	335, 367, 2490, 2522
AleI	CACNNNNGTG	1 cut(s)	584
Alw21I	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
Alw26I	GTCTC	3 cut(s)	136, 722, 2994
AlwI	GGATC	2 cut(s)	1502, 2694
AlwNI	CAGNNNCTG	5 cut(s)	778, 1178, 2642, 2927, 2953
Ama87I	CYCGRG	1 cut(s)	2987
Aor51HI	AGCGCT	1 cut(s)	415
AoxI	GGCC	6 cut(s)	420, 457, 1035, 1202, 2328, 2509
ApoI	RAATTY	1 cut(s)	1539
ArsI	GACNNNNNNTTYG	2 cut(s)	2471, 2503
AseI	ATTAAT	2 cut(s)	2697, 2964
Asp700I	GAANNNNTTC	2 cut(s)	2046, 2603
AspLEI	GCGC	4 cut(s)	92, 120, 170, 416
AspS9I	GGNCC	4 cut(s)	736, 1202, 2020, 2917
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	8 cut(s)	168, 280, 758, 844, 1235, 1247, 1454, 2371
AvaI	CYCGRG	1 cut(s)	2987
AvaII	GGWCC	3 cut(s)	736, 2020, 2917
BaeI	ACNNNNGTAYC	4 cut(s)	621, 654, 962, 995
BalI	TGGCCA	1 cut(s)	2511
BanI	GGYRCC	2 cut(s)	117, 167
BanII	GRGCYC	2 cut(s)	219, 555
BauI	CACGAG	1 cut(s)	1104
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
BccI	CCATC	4 cut(s)	1568, 1718, 2366, 2989
BceAI	ACGGC	5 cut(s)	105, 131, 181, 407, 416
BcgI	CGANNNNNNTGC	2 cut(s)	2774, 2808
BciT130I	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
BciVI	GTATCC	1 cut(s)	1721
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	3 cut(s)	136, 722, 2994
BfaI	CTAG	4 cut(s)	752, 1133, 1388, 1785
BfmI	CTRYAG	2 cut(s)	1002, 2298
BfoI	RGCGCY	3 cut(s)	121, 171, 417
BfrI	CTTAAG	1 cut(s)	1340
BfuAI	ACCTGC	1 cut(s)	2145
BfuI	GTATCC	1 cut(s)	1721
BglII	AGATCT	1 cut(s)	1668
Bme1390I	CCNGG	8 cut(s)	461, 597, 863, 1194, 2106, 2327, 2392, 2513
Bme18I	GGWCC	3 cut(s)	736, 2020, 2917
BmeT110I	CYCGRG	1 cut(s)	2987
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	4 cut(s)	736, 1202, 2020, 2917
BmiI	GGNNCC	9 cut(s)	119, 169, 388, 737, 1868, 2022, 2324, 2918, 2919
BmrFI	CCNGG	8 cut(s)	461, 597, 863, 1194, 2106, 2327, 2392, 2513
BmrI	ACTGGG	2 cut(s)	151, 741
BmsI	GCATC	5 cut(s)	799, 928, 1165, 1693, 1721
BmuI	ACTGGG	2 cut(s)	151, 741
BoxI	GACNNNNGTC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	2615, 2647
BpmI	CTGGAG	6 cut(s)	41, 243, 579, 2214, 2664, 2747
Bpu10I	CCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	746, 1055
BpuMI	CCSGG	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	1843
BsaBI	GATNNNNATC	1 cut(s)	875
BsaHI	GRCGYC	4 cut(s)	118, 168, 272, 2486
BsaI	GGTCTC	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	7 cut(s)	114, 127, 148, 1199, 1611, 1876, 2914
Bse118I	RCCGGY	3 cut(s)	455, 570, 1545
Bse1I	ACTGG	7 cut(s)	58, 157, 226, 736, 1038, 2197, 2647
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	875
BseBI	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
BseGI	GGATG	9 cut(s)	469, 625, 670, 1600, 1708, 2035, 2248, 2317, 2875
BseJI	GATNNNNATC	1 cut(s)	875
BseLI	CCNNNNNNNGG	7 cut(s)	114, 127, 148, 1199, 1611, 1876, 2914
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	5 cut(s)	1866, 2106, 2237, 2574, 2919
BseNI	ACTGG	7 cut(s)	58, 157, 226, 736, 1038, 2197, 2647
BseRI	GAGGAG	5 cut(s)	8, 1508, 1604, 2672, 2894
BseX3I	CGGCCG	2 cut(s)	420, 457
BseYI	CCCAGC	5 cut(s)	1862, 2680, 2853, 2920, 2956
BsgI	GTGCAG	2 cut(s)	1484, 3042
Bsh1236I	CGCG	2 cut(s)	90, 350
Bsh1285I	CGRYCG	2 cut(s)	423, 460
BshFI	GGCC	6 cut(s)	422, 459, 1037, 1204, 2330, 2511
BshNI	GGYRCC	2 cut(s)	117, 167
BsiEI	CGRYCG	2 cut(s)	423, 460
BsiHKAI	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
BsiHKCI	CYCGRG	1 cut(s)	2987
BsiSI	CCGG	6 cut(s)	291, 419, 456, 460, 571, 1546
BslFI	GGGAC	4 cut(s)	95, 749, 2006, 2930
BslI	CCNNNNNNNGG	7 cut(s)	114, 127, 148, 1199, 1611, 1876, 2914
BsmAI	GTCTC	3 cut(s)	136, 722, 2994
BsmFI	GGGAC	4 cut(s)	95, 749, 2006, 2930
BsmI	GAATGC	2 cut(s)	539, 1003
BsnI	GGCC	6 cut(s)	422, 459, 1037, 1204, 2330, 2511
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	2987
Bsp1286I	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
Bsp1407I	TGTACA	2 cut(s)	2163, 2314
Bsp143I	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
Bsp19I	CCATGG	2 cut(s)	1768, 2973
BspANI	GGCC	6 cut(s)	422, 459, 1037, 1204, 2330, 2511
BspCNI	CTCAG	5 cut(s)	1867, 2107, 2236, 2575, 2920
BspFNI	CGCG	2 cut(s)	90, 350
BspHI	TCATGA	1 cut(s)	1531
BspLI	GGNNCC	9 cut(s)	119, 169, 388, 737, 1868, 2022, 2324, 2918, 2919
BspMAI	CTGCAG	1 cut(s)	1006
BspMI	ACCTGC	1 cut(s)	2145
BspPI	GGATC	2 cut(s)	1502, 2694
BspQI	GCTCTTC	1 cut(s)	1110
BspT107I	GGYRCC	2 cut(s)	117, 167
BspTI	CTTAAG	1 cut(s)	1340
BspTNI	GGTCTC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	3 cut(s)	455, 570, 1545
BsrGI	TGTACA	2 cut(s)	2163, 2314
BsrI	ACTGG	7 cut(s)	58, 157, 226, 736, 1038, 2197, 2647
BssAI	RCCGGY	3 cut(s)	455, 570, 1545
BssMI	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
BssNAI	GTATAC	2 cut(s)	1408, 1634
BssNI	GRCGYC	4 cut(s)	118, 168, 272, 2486
BssSI	CACGAG	1 cut(s)	1104
BssT1I	CCWWGG	3 cut(s)	830, 1768, 2973
Bst1107I	GTATAC	2 cut(s)	1408, 1634
Bst2BI	CACGAG	1 cut(s)	1104
Bst2UI	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
Bst4CI	ACNGT	9 cut(s)	109, 740, 1412, 1648, 1819, 1871, 2020, 2617, 2937
Bst6I	CTCTTC	2 cut(s)	1110, 1305
BstACI	GRCGYC	4 cut(s)	118, 168, 272, 2486
BstAFI	CTTAAG	1 cut(s)	1340
BstAPI	GCANNNNNTGC	2 cut(s)	545, 2953
BstAUI	TGTACA	2 cut(s)	2163, 2314
BstBAI	YACGTR	1 cut(s)	1843
BstDEI	CTNAG	8 cut(s)	260, 959, 1875, 2057, 2115, 2223, 2583, 2928
BstDSI	CCRYGG	3 cut(s)	113, 1768, 2973
BstEII	GGTNACC	1 cut(s)	850
BstENI	CCTNNNNNAGG	1 cut(s)	1609
BstF5I	GGATG	9 cut(s)	469, 625, 670, 1600, 1708, 2035, 2248, 2317, 2875
BstFNI	CGCG	2 cut(s)	90, 350
BstH2I	RGCGCY	3 cut(s)	121, 171, 417
BstHHI	GCGC	4 cut(s)	92, 120, 170, 416
BstKTI	GATC	6 cut(s)	751, 1510, 1671, 2229, 2689, 2893
BstMAI	GTCTC	3 cut(s)	136, 722, 2994
BstMBI	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
BstMCI	CGRYCG	2 cut(s)	423, 460
BstNI	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
BstNSI	RCATGY	1 cut(s)	2827
BstPAI	GACNNNNGTC	1 cut(s)	194
BstPI	GGTNACC	1 cut(s)	850
BstSCI	CCNGG	8 cut(s)	459, 595, 861, 1192, 2104, 2325, 2390, 2511
BstSFI	CTRYAG	2 cut(s)	1002, 2298
BstSNI	TACGTA	1 cut(s)	1843
BstUI	CGCG	2 cut(s)	90, 350
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	2 cut(s)	1668, 2686
BstXI	CCANNNNNNTGG	1 cut(s)	2865
BstYI	RGATCY	2 cut(s)	1668, 2686
BstZ17I	GTATAC	2 cut(s)	1408, 1634
BstZI	CGGCCG	2 cut(s)	420, 457
BsuI	GTATCC	1 cut(s)	1721
BsuRI	GGCC	6 cut(s)	422, 459, 1037, 1204, 2330, 2511
BtgI	CCRYGG	3 cut(s)	113, 1768, 2973
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	9 cut(s)	469, 625, 670, 1600, 1708, 2035, 2248, 2317, 2875
BtsIMutI	CAGTG	4 cut(s)	219, 591, 2640, 2756
BveI	ACCTGC	1 cut(s)	2145
CaiI	CAGNNNCTG	5 cut(s)	778, 1178, 2642, 2927, 2953
CciI	TCATGA	1 cut(s)	1531
CfoI	GCGC	4 cut(s)	92, 120, 170, 416
Cfr10I	RCCGGY	3 cut(s)	455, 570, 1545
Cfr13I	GGNCC	4 cut(s)	736, 1202, 2020, 2917
CseI	GACGC	4 cut(s)	714, 749, 1742, 2475
Csp6I	GTAC	4 cut(s)	397, 1872, 2164, 2315
CviQI	GTAC	4 cut(s)	397, 1872, 2164, 2315
DdeI	CTNAG	8 cut(s)	260, 959, 1875, 2057, 2115, 2223, 2583, 2928
DinI	GGCGCC	2 cut(s)	119, 169
DpnI	GATC	6 cut(s)	750, 1509, 1670, 2228, 2688, 2892
DpnII	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
EaeI	YGGCCR	5 cut(s)	420, 457, 1035, 2328, 2509
EagI	CGGCCG	2 cut(s)	420, 457
Eam1104I	CTCTTC	2 cut(s)	1110, 1305
EarI	CTCTTC	2 cut(s)	1110, 1305
Ecl136II	GAGCTC	2 cut(s)	217, 553
EclXI	CGGCCG	2 cut(s)	420, 457
Eco105I	TACGTA	1 cut(s)	1843
Eco130I	CCWWGG	3 cut(s)	830, 1768, 2973
Eco24I	GRGCYC	2 cut(s)	219, 555
Eco31I	GGTCTC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	2580
Eco47I	GGWCC	3 cut(s)	736, 2020, 2917
Eco47III	AGCGCT	1 cut(s)	415
Eco52I	CGGCCG	2 cut(s)	420, 457
Eco53kI	GAGCTC	2 cut(s)	217, 553
Eco57I	CTGAAG	3 cut(s)	567, 693, 1541
Eco88I	CYCGRG	1 cut(s)	2987
Eco91I	GGTNACC	1 cut(s)	850
EcoICRI	GAGCTC	2 cut(s)	217, 553
EcoNI	CCTNNNNNAGG	1 cut(s)	1609
EcoO109I	RGGNCCY	1 cut(s)	2917
EcoO65I	GGTNACC	1 cut(s)	850
EcoRII	CCWGG	7 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511
EcoRV	GATATC	1 cut(s)	2580
EcoT14I	CCWWGG	3 cut(s)	830, 1768, 2973
EcoT38I	GRGCYC	2 cut(s)	219, 555
EgeI	GGCGCC	2 cut(s)	119, 169
EheI	GGCGCC	2 cut(s)	119, 169
ErhI	CCWWGG	3 cut(s)	830, 1768, 2973
FaqI	GGGAC	4 cut(s)	95, 749, 2006, 2930
FauI	CCCGC	5 cut(s)	149, 298, 350, 1084, 1611
FauNDI	CATATG	1 cut(s)	1276
FblI	GTMKAC	3 cut(s)	703, 1407, 1633
FokI	GGATG	9 cut(s)	476, 632, 677, 1607, 1715, 2042, 2255, 2324, 2882
FriOI	GRGCYC	2 cut(s)	219, 555
FspBI	CTAG	4 cut(s)	752, 1133, 1388, 1785
GlaI	GCGC	4 cut(s)	91, 119, 169, 415
GsaI	CCCAGC	5 cut(s)	1866, 2684, 2857, 2924, 2960
GsuI	CTGGAG	6 cut(s)	41, 243, 579, 2214, 2664, 2747
HaeII	RGCGCY	3 cut(s)	121, 171, 417
HaeIII	GGCC	6 cut(s)	422, 459, 1037, 1204, 2330, 2511
HapII	CCGG	6 cut(s)	291, 419, 456, 460, 571, 1546
HgaI	GACGC	4 cut(s)	714, 749, 1742, 2475
HhaI	GCGC	4 cut(s)	92, 120, 170, 416
Hin1I	GRCGYC	4 cut(s)	118, 168, 272, 2486
Hin6I	GCGC	4 cut(s)	90, 118, 168, 414
HinP1I	GCGC	4 cut(s)	90, 118, 168, 414
HincII	GTYRAC	1 cut(s)	1837
HindII	GTYRAC	1 cut(s)	1837
HindIII	AAGCTT	4 cut(s)	245, 1319, 1553, 2337
HpaI	GTTAAC	1 cut(s)	1837
HpaII	CCGG	6 cut(s)	291, 419, 456, 460, 571, 1546
HphI	GGTGA	8 cut(s)	168, 280, 758, 844, 1235, 1247, 1454, 2371
Hpy166II	GTNNAC	8 cut(s)	397, 640, 704, 1408, 1415, 1634, 1837, 2317
Hpy188III	TCNNGA	7 cut(s)	331, 752, 1077, 1532, 2704, 2726, 2876
Hpy8I	GTNNAC	8 cut(s)	397, 640, 704, 1408, 1415, 1634, 1837, 2317
Hpy99I	CGWCG	5 cut(s)	277, 428, 437, 765, 1736
HpyCH4III	ACNGT	9 cut(s)	109, 740, 1412, 1648, 1819, 1871, 2020, 2617, 2937
HpyCH4IV	ACGT	5 cut(s)	173, 272, 450, 1417, 1842
HpyF3I	CTNAG	8 cut(s)	260, 959, 1875, 2057, 2115, 2223, 2583, 2928
HpySE526I	ACGT	5 cut(s)	173, 272, 450, 1417, 1842
Hsp92I	GRCGYC	4 cut(s)	118, 168, 272, 2486
HspAI	GCGC	4 cut(s)	90, 118, 168, 414
KasI	GGCGCC	2 cut(s)	117, 167
KflI	GGGWCCC	1 cut(s)	2917
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
KspAI	GTTAAC	1 cut(s)	1837
Kzo9I	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
LguI	GCTCTTC	1 cut(s)	1110
LweI	GCATC	5 cut(s)	799, 928, 1165, 1693, 1721
MaeI	CTAG	4 cut(s)	752, 1133, 1388, 1785
MaeII	ACGT	5 cut(s)	173, 272, 450, 1417, 1842
MalI	GATC	6 cut(s)	750, 1509, 1670, 2228, 2688, 2892
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
MfeI	CAATTG	3 cut(s)	279, 1707, 2378
MflI	RGATCY	2 cut(s)	1668, 2686
MhlI	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
MlsI	TGGCCA	1 cut(s)	2511
MluCI	AATT	9 cut(s)	51, 279, 1206, 1539, 1707, 1745, 1931, 2378, 2752
MluNI	TGGCCA	1 cut(s)	2511
Mly113I	GGCGCC	2 cut(s)	118, 168
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	2511
MroNI	GCCGGC	1 cut(s)	455
MroXI	GAANNNNTTC	2 cut(s)	2046, 2603
MscI	TGGCCA	1 cut(s)	2511
MslI	CAYNNNNRTG	2 cut(s)	584, 2863
Msp20I	TGGCCA	1 cut(s)	2511
MspA1I	CMGCKG	6 cut(s)	392, 923, 1091, 1561, 1862, 2684
MspCI	CTTAAG	1 cut(s)	1340
MspI	CCGG	6 cut(s)	291, 419, 456, 460, 571, 1546
MspR9I	CCNGG	8 cut(s)	461, 597, 863, 1194, 2106, 2327, 2392, 2513
MunI	CAATTG	3 cut(s)	279, 1707, 2378
Mva1269I	GAATGC	2 cut(s)	539, 1003
MvaI	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
MvnI	CGCG	2 cut(s)	90, 350
NaeI	GCCGGC	1 cut(s)	457
NarI	GGCGCC	2 cut(s)	118, 168
NciI	CCSGG	1 cut(s)	461
NcoI	CCATGG	2 cut(s)	1768, 2973
NdeI	CATATG	1 cut(s)	1276
NdeII	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
NgoMIV	GCCGGC	1 cut(s)	455
NlaIV	GGNNCC	9 cut(s)	119, 169, 388, 737, 1868, 2022, 2324, 2918, 2919
NmeAIII	GCCGAG	3 cut(s)	128, 1063, 2356
NmuCI	GTSAC	9 cut(s)	174, 268, 577, 850, 1099, 1279, 1924, 2772, 2937
NspI	RCATGY	1 cut(s)	2827
OliI	CACNNNNGTG	1 cut(s)	584
PagI	TCATGA	1 cut(s)	1531
PciSI	GCTCTTC	1 cut(s)	1110
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PctI	GAATGC	2 cut(s)	539, 1003
PdiI	GCCGGC	1 cut(s)	457
PdmI	GAANNNNTTC	2 cut(s)	2046, 2603
PfoI	TCCNGGA	1 cut(s)	595
PleI	GAGTC	1 cut(s)	233
PluTI	GGCGCC	2 cut(s)	121, 171
PpsI	GAGTC	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	1843
PpuMI	RGGWCCY	1 cut(s)	2917
PshAI	GACNNNNGTC	1 cut(s)	194
PshBI	ATTAAT	2 cut(s)	2697, 2964
Psp124BI	GAGCTC	2 cut(s)	219, 555
Psp5II	RGGWCCY	1 cut(s)	2917
Psp6I	CCWGG	7 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511
PspEI	GGTNACC	1 cut(s)	850
PspFI	CCCAGC	5 cut(s)	1862, 2680, 2853, 2920, 2956
PspGI	CCWGG	7 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511
PspN4I	GGNNCC	9 cut(s)	119, 169, 388, 737, 1868, 2022, 2324, 2918, 2919
PspPI	GGNCC	4 cut(s)	736, 1202, 2020, 2917
PspPPI	RGGWCCY	1 cut(s)	2917
PstI	CTGCAG	1 cut(s)	1006
PstNI	CAGNNNCTG	5 cut(s)	778, 1178, 2642, 2927, 2953
PsuI	RGATCY	2 cut(s)	1668, 2686
PvuII	CAGCTG	3 cut(s)	923, 1561, 1862
RsaI	GTAC	4 cut(s)	398, 1873, 2165, 2316
RsaNI	GTAC	4 cut(s)	397, 1872, 2164, 2315
RseI	CAYNNNNRTG	2 cut(s)	584, 2863
SacI	GAGCTC	2 cut(s)	219, 555
SapI	GCTCTTC	1 cut(s)	1110
Sau3AI	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
Sau96I	GGNCC	4 cut(s)	736, 1202, 2020, 2917
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	8 cut(s)	461, 597, 863, 1194, 2106, 2327, 2392, 2513
SduI	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
SfaNI	GCATC	5 cut(s)	799, 928, 1165, 1693, 1721
SfcI	CTRYAG	2 cut(s)	1002, 2298
SfoI	GGCGCC	2 cut(s)	119, 169
SinI	GGWCC	3 cut(s)	736, 2020, 2917
SmiMI	CAYNNNNRTG	2 cut(s)	584, 2863
SmlI	CTYRAG	3 cut(s)	725, 1070, 1340
SmoI	CTYRAG	3 cut(s)	725, 1070, 1340
SnaBI	TACGTA	1 cut(s)	1843
Sse9I	AATT	9 cut(s)	51, 279, 1206, 1539, 1707, 1745, 1931, 2378, 2752
SspDI	GGCGCC	2 cut(s)	117, 167
SspI	AATATT	3 cut(s)	1048, 2283, 2527
SspMI	CTAG	4 cut(s)	752, 1133, 1388, 1785
SstI	GAGCTC	2 cut(s)	219, 555
StyD4I	CCNGG	8 cut(s)	459, 595, 861, 1192, 2104, 2325, 2390, 2511
StyI	CCWWGG	3 cut(s)	830, 1768, 2973
TaaI	ACNGT	9 cut(s)	109, 740, 1412, 1648, 1819, 1871, 2020, 2617, 2937
TaiI	ACGT	5 cut(s)	176, 275, 453, 1420, 1845
TaqI	TCGA	4 cut(s)	435, 627, 1506, 1970
TasI	AATT	9 cut(s)	51, 279, 1206, 1539, 1707, 1745, 1931, 2378, 2752
TatI	WGTACW	2 cut(s)	2163, 2314
TauI	GCSGC	7 cut(s)	43, 187, 256, 259, 392, 431, 2785
TscAI	CASTG	4 cut(s)	226, 591, 2647, 2763
TseFI	GTSAC	9 cut(s)	174, 268, 577, 850, 1099, 1279, 1924, 2772, 2937
Tsp45I	GTSAC	9 cut(s)	174, 268, 577, 850, 1099, 1279, 1924, 2772, 2937
TspDTI	ATGAA	7 cut(s)	17, 636, 804, 1041, 1520, 1548, 2853
TspGWI	ACGGA	1 cut(s)	869
TspRI	CASTG	4 cut(s)	226, 591, 2647, 2763
Vha464I	CTTAAG	1 cut(s)	1340
VpaK11BI	GGWCC	3 cut(s)	736, 2020, 2917
VspI	ATTAAT	2 cut(s)	2697, 2964
XagI	CCTNNNNNAGG	1 cut(s)	1609
XapI	RAATTY	1 cut(s)	1539
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	1 cut(s)	2827
XmiI	GTMKAC	3 cut(s)	703, 1407, 1633
XmnI	GAANNNNTTC	2 cut(s)	2046, 2603
XspI	CTAG	4 cut(s)	752, 1133, 1388, 1785
ZraI	GACGTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.