Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

30572348 .. 30573270

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGCTCATTAAATTTGTTCAAAACTATGAGAAAAAGATTGAAGAGAATCGTTTAGCAGAGTTGGAAGATGACTACCGTTGCAAAAATGGTGCACCACGTCCAAAAGTATGGAGTAAAATGTTAAGGAGTGCAGCCAAGGTGTTTGATAAAAATAATATCACTACTTTACCCACTCAATATATATTGAAAAGGTGGACTAAAGAAGCAAAGAAAGGGATTGTGGTCAGCAATAATACATGTGGAGGAACAAGTGAGAATTCAAAGTCTGCTAGAGTGTTGCGCCTTAGCGAATTGATGCATGAAGGAAATAGTGTGTATGACATAGCCTCATTGACTGGTTCAGGTACTAAAATTGTCAAGGACCTGTTAAAAGAGGCAATGAAGCGCCTTGAAAAAGATAAGGACACTATGTACGTGTTGGAAAATTTGAAGAAACTTGGTGCCCAATCTGACTCTAGCATTTCTGGTAATGAGACACTAGTTTTGAATCCACCAAGTGCAAAGACTAAAGGAATGAAAAATGCAAGAATCAAAGACGTGAGGGAGATAAACCAACCGAAGAAGAGAACAAAAGAACAAGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

196

Amino Acids

22.21

Weight (kDa)

9.66

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AcsI	RAATTY	3 cut(s)	14, 259, 427
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	349, 416
AflIII	ACRYGT	2 cut(s)	239, 417
AgsI	TTSAA	7 cut(s)	23, 44, 190, 264, 395, 433, 490
AhlI	ACTAGT	1 cut(s)	481
AjiI	CACGTC	2 cut(s)	101, 541
AluBI	AGCT	2 cut(s)	7, 588
AluI	AGCT	2 cut(s)	7, 588
Alw21I	GWGCWC	2 cut(s)	9, 97
Alw26I	GTCTC	1 cut(s)	470
Alw44I	GTGCAC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	3 cut(s)	14, 259, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AspLEI	GCGC	2 cut(s)	285, 390
AspS9I	GGNCC	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	364
BaeGI	GKGCMC	2 cut(s)	97, 448
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	9, 97
BbvI	GCAGC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	470
BcuI	ACTAGT	1 cut(s)	481
BfaI	CTAG	3 cut(s)	273, 459, 482
BfoI	RGCGCY	1 cut(s)	391
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	364
BmgBI	CACGTC	2 cut(s)	101, 541
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	445
BmsI	GCATC	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	343
BseSI	GKGCMC	2 cut(s)	97, 448
BseXI	GCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	443
BsiHKAI	GWGCWC	2 cut(s)	9, 97
BsmAI	GTCTC	1 cut(s)	470
Bsp1286I	GDGCHC	3 cut(s)	9, 97, 448
BspLI	GGNNCC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	39, 560
BstBAI	YACGTR	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	287
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	2 cut(s)	285, 390
BstMAI	GTCTC	1 cut(s)	470
BstNSI	RCATGY	1 cut(s)	243
BstSLI	GKGCMC	2 cut(s)	97, 448
BstV1I	GCAGC	1 cut(s)	146
BstXI	CCANNNNNNTGG	1 cut(s)	111
BtrI	CACGTC	2 cut(s)	101, 541
CfoI	GCGC	2 cut(s)	285, 390
Cfr13I	GGNCC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	348, 415
CviAII	CATG	2 cut(s)	240, 302
CviJI	RGCY	4 cut(s)	7, 137, 329, 588
CviKI_1	RGCY	4 cut(s)	7, 137, 329, 588
CviQI	GTAC	2 cut(s)	348, 415
DdeI	CTNAG	1 cut(s)	287
DraIII	CACNNNGTG	1 cut(s)	500
Eam1104I	CTCTTC	2 cut(s)	39, 560
EarI	CTCTTC	2 cut(s)	39, 560
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	243, 305
FaiI	YATR	9 cut(s)	30, 112, 183, 185, 241, 303, 321, 326, 413
FatI	CATG	2 cut(s)	239, 301
Fnu4HI	GCNGC	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	3 cut(s)	273, 459, 482
GlaI	GCGC	2 cut(s)	284, 389
GluI	GCNGC	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	391
HhaI	GCGC	2 cut(s)	285, 390
Hin1II	CATG	2 cut(s)	243, 305
Hin6I	GCGC	2 cut(s)	283, 388
HinP1I	GCGC	2 cut(s)	283, 388
HinfI	GANTC	4 cut(s)	49, 455, 490, 531
Hpy166II	GTNNAC	2 cut(s)	95, 198
Hpy188I	TCNGA	1 cut(s)	454
Hpy8I	GTNNAC	2 cut(s)	95, 198
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	3 cut(s)	100, 417, 540
HpyCH4V	TGCA	6 cut(s)	84, 95, 134, 301, 503, 527
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	3 cut(s)	100, 417, 540
Hsp92II	CATG	2 cut(s)	243, 305
HspAI	GCGC	2 cut(s)	283, 388
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	324, 330, 380, 453
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	3 cut(s)	273, 459, 482
MaeII	ACGT	3 cut(s)	100, 417, 540
MboII	GAAGA	5 cut(s)	56, 80, 445, 574, 577
MhlI	GDGCHC	3 cut(s)	9, 97, 448
MluCI	AATT	5 cut(s)	14, 259, 293, 354, 427
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	2 cut(s)	45, 402
MnlI	CCTC	4 cut(s)	239, 340, 370, 537
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	3 cut(s)	12, 125, 371
NlaIII	CATG	2 cut(s)	243, 305
NlaIV	GGNNCC	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	1 cut(s)	243
PciI	ACATGT	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	49, 490, 531
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	364
PscI	ACATGT	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	364
PspPPI	RGGWCCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	349, 416
RsaNI	GTAC	2 cut(s)	348, 415
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	12, 125, 371
SatI	GCNGC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	449
SduI	GDGCHC	3 cut(s)	9, 97, 448
SetI	ASST	9 cut(s)	9, 103, 144, 197, 349, 369, 420, 543, 590
SfaNI	GCATC	1 cut(s)	288
SinI	GGWCC	1 cut(s)	364
SpeI	ACTAGT	1 cut(s)	481
Sse9I	AATT	5 cut(s)	14, 259, 293, 354, 427
SspMI	CTAG	3 cut(s)	273, 459, 482
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	3 cut(s)	103, 420, 543
TasI	AATT	5 cut(s)	14, 259, 293, 354, 427
TfiI	GAWTC	3 cut(s)	49, 490, 531
Tru1I	TTAA	3 cut(s)	12, 125, 371
Tru9I	TTAA	3 cut(s)	12, 125, 371
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	318, 398, 533
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	3 cut(s)	14, 259, 427
XceI	RCATGY	1 cut(s)	243
XspI	CTAG	3 cut(s)	273, 459, 482
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.