Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

59363807 .. 59366943

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0427000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAATGGGAGCACTGGCTTTCGGTTCAGCGTCAGGCGCGTGAGGGCAGGGCTGGTTCCAAGCGGCTATGGCGGTGCAGCAACGTCTGCTCGGTTGGCAGCGTCAAGGTTATTAGCAAGCTTGAACGCCGCACTGTTGCCTACCATGAGTCAGGGCATGCATTGTTGGTGGACTAACTGGCTTCCATCTGTACCTTATAGGTACCAATCAGGTGACATTCCTCGAATCAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

78

Amino Acids

8.54

Weight (kDa)

11.72

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	201
AccII	CGCG	1 cut(s)	39
AciI	CCGC	3 cut(s)	63, 72, 129
AfaI	GTAC	2 cut(s)	192, 203
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
Alw21I	GWGCWC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	77, 98
Asp718I	GGTACC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	89, 110
BccI	CCATC	1 cut(s)	193
BisI	GCNGC	4 cut(s)	64, 78, 99, 129
BlsI	GCNGC	4 cut(s)	65, 79, 100, 130
BmiI	GGNNCC	2 cut(s)	57, 203
Bse1I	ACTGG	2 cut(s)	19, 182
BseNI	ACTGG	2 cut(s)	19, 182
BseXI	GCAGC	2 cut(s)	89, 110
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	14
BspACI	CCGC	3 cut(s)	63, 72, 129
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	57, 203
BspT107I	GGYRCC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	19, 182
Bst4CI	ACNGT	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	118, 158
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 69, 86, 95
BstNSI	RCATGY	1 cut(s)	160
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	89, 110
BtsIMutI	CAGTG	2 cut(s)	12, 131
Cac8I	GCNNGC	2 cut(s)	118, 158
CfoI	GCGC	1 cut(s)	39
CseI	GACGC	2 cut(s)	19, 90
Csp6I	GTAC	2 cut(s)	191, 202
CviAII	CATG	2 cut(s)	145, 157
CviJI	RGCY	5 cut(s)	18, 52, 66, 120, 181
CviKI_1	RGCY	5 cut(s)	18, 52, 66, 120, 181
CviQI	GTAC	2 cut(s)	191, 202
EcoT22I	ATGCAT	1 cut(s)	162
FaeI	CATG	2 cut(s)	148, 160
FaiI	YATR	4 cut(s)	69, 146, 158, 198
FatI	CATG	2 cut(s)	144, 156
Fnu4HI	GCNGC	4 cut(s)	64, 78, 99, 129
Fsp4HI	GCNGC	4 cut(s)	64, 78, 99, 129
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	4 cut(s)	64, 78, 99, 129
HgaI	GACGC	2 cut(s)	19, 90
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	148, 160
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	2 cut(s)	148, 225
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	77, 160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 69, 86, 95
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	148, 160
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	6 cut(s)	19, 33, 38, 137, 163, 195
Lsp1109I	GCAGC	2 cut(s)	89, 110
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	36, 231
Mph1103I	ATGCAT	1 cut(s)	162
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	36, 69, 86, 95
NlaIII	CATG	2 cut(s)	148, 160
NlaIV	GGNNCC	2 cut(s)	57, 203
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	1 cut(s)	160
PaeI	GCATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	4 cut(s)	65, 79, 100, 130
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	57, 203
RsaI	GTAC	2 cut(s)	192, 203
RsaNI	GTAC	2 cut(s)	191, 202
SatI	GCNGC	4 cut(s)	64, 78, 99, 129
SchI	GAGTC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	6 cut(s)	86, 110, 122, 196, 203, 214
SphI	GCATGC	1 cut(s)	160
SsiI	CCGC	3 cut(s)	63, 72, 129
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	223
TauI	GCSGC	2 cut(s)	66, 131
TfiI	GAWTC	1 cut(s)	225
TscAI	CASTG	2 cut(s)	19, 138
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	77, 98
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	19, 138
XceI	RCATGY	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.