Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

38047652 .. 38051128

Gene Structure 3477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0268000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCCTCATGGAACGCTTGAAGTCCTTCTGGTTGGGGCCAAAGACCTTGAAGACGATGATTTTTTCGGTAAAATGGATCCCTATGTCATTTTAACCTTACGGACTCAAGAGAAGAAAAGCACTGTGGTAGAAGGGCAAGGATCTGAACCAGAATGGAATGAAACTTTTCAATTCACGGTCTCATCGGATGATGTTACCGAACTCAACTTAAAAATAATGGACAAAGATACCTTCAGCGCAGATGATTTTGTTGGAGAAGCAACCATTCCTTTAGAATCAGTGTTCATGAAAGGAAACATAGCACCATCTAAATACAATGTTGTCAATGCGGAAAAGGAATATCATGGAGAGATTACAGTTGGACTCGTTTTCACCCCTGAGAGAACTAGCCATCGTGCAGTCGACTGTGATGAATATGGGGGGAGTCATGGTGGCTCTAGGAGGGGACATGGCGATTCCAGGGGGGAGAGGTATGGTGATGACTATCAGGGGAGCTACGGTGATGACTCAAGGAGGAACCATGGTGACTCTAGGGAGAGGTATGGTCATGATGACTCTAGGAGGGGCGGCCATGGTGACTCTAGGGAGAGGTATGATGATGATGACTGCGGGGGAGGCTATGGTGATTCCAGGGGAAGGAGTGGTGGACGGAGAGAGTCATCTAGGTATGAGAAGGAGGAGGAAAGCTATGGTGGATACAAAGAATCATCGTACCGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

240

Amino Acids

26.9

Weight (kDa)

4.78

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	4 - 99	7.7e-25	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	3 cut(s)	329, 567, 609
AclWI	GGATC	3 cut(s)	71, 84, 148
AcoI	YGGCCR	1 cut(s)	568
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	1 cut(s)	636
AgsI	TTSAA	3 cut(s)	20, 50, 170
AjnI	CCWGG	2 cut(s)	458, 629
AluBI	AGCT	2 cut(s)	495, 687
AluI	AGCT	2 cut(s)	495, 687
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	3 cut(s)	71, 84, 148
AoxI	GGCC	2 cut(s)	36, 568
Asp700I	GAANNNNTTC	2 cut(s)	24, 165
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	6 cut(s)	364, 488, 512, 536, 587, 635
BamHI	GGATCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	2 cut(s)	313, 399
BciT130I	CCWGG	2 cut(s)	460, 631
BciVI	GTATCC	1 cut(s)	689
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	6 cut(s)	387, 438, 531, 558, 582, 663
BfuI	GTATCC	1 cut(s)	689
BisI	GCNGC	1 cut(s)	568
BlsI	GCNGC	1 cut(s)	569
Bme1390I	CCNGG	2 cut(s)	460, 631
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	3 cut(s)	37, 78, 518
BmrFI	CCNGG	2 cut(s)	460, 631
BpiI	GAAGAC	1 cut(s)	57
BpuEI	CTTGAG	2 cut(s)	90, 493
BsaBI	GATNNNNATC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	4 cut(s)	459, 520, 571, 630
BsaXI	ACNNNNNCTCC	4 cut(s)	415, 445, 484, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	636
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	460, 631
BseDI	CCNNGG	4 cut(s)	459, 520, 571, 630
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	38, 570
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	636
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	38, 570
Bso31I	GGTCTC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	76, 140
Bsp19I	CCATGG	2 cut(s)	520, 571
BspACI	CCGC	3 cut(s)	329, 567, 609
BspANI	GGCC	2 cut(s)	38, 570
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	2 cut(s)	285, 547
BspLI	GGNNCC	3 cut(s)	37, 78, 518
BspPI	GGATC	3 cut(s)	71, 84, 148
BspTNI	GGTCTC	1 cut(s)	184
BssECI	CCNNGG	4 cut(s)	459, 520, 571, 630
BssMI	GATC	2 cut(s)	76, 140
BssT1I	CCWWGG	2 cut(s)	520, 571
Bst2UI	CCWGG	2 cut(s)	460, 631
Bst4CI	ACNGT	5 cut(s)	124, 178, 358, 407, 500
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	2 cut(s)	520, 571
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	2 cut(s)	79, 143
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	76, 140
BstMWI	GCNNNNNNNGC	1 cut(s)	615
BstNI	CCWGG	2 cut(s)	460, 631
BstSCI	CCNGG	2 cut(s)	458, 629
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	76, 140
BstYI	RGATCY	2 cut(s)	76, 140
BsuI	GTATCC	1 cut(s)	689
BsuRI	GGCC	2 cut(s)	38, 570
BtgI	CCRYGG	2 cut(s)	520, 571
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	120, 285
CciI	TCATGA	2 cut(s)	285, 547
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	8 cut(s)	8, 286, 344, 428, 449, 521, 548, 572
CviJI	RGCY	7 cut(s)	38, 390, 435, 495, 570, 618, 687
CviKI_1	RGCY	7 cut(s)	38, 390, 435, 495, 570, 618, 687
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	2 cut(s)	78, 142
DpnII	GATC	2 cut(s)	76, 140
EaeI	YGGCCR	1 cut(s)	568
Eco130I	CCWWGG	2 cut(s)	520, 571
Eco31I	GGTCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	458, 629
EcoT14I	CCWWGG	2 cut(s)	520, 571
ErhI	CCWWGG	2 cut(s)	520, 571
FaeI	CATG	8 cut(s)	11, 289, 347, 431, 452, 524, 551, 575
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	8 cut(s)	7, 285, 343, 427, 448, 520, 547, 571
FauI	CCCGC	1 cut(s)	602
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	568
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	568
FspBI	CTAG	6 cut(s)	387, 438, 531, 558, 582, 663
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	38, 570
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	8 cut(s)	11, 289, 347, 431, 452, 524, 551, 575
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HphI	GGTGA	6 cut(s)	364, 488, 512, 536, 587, 635
Hpy166II	GTNNAC	2 cut(s)	403, 647
Hpy188I	TCNGA	2 cut(s)	145, 187
Hpy188III	TCNNGA	3 cut(s)	107, 286, 548
Hpy8I	GTNNAC	2 cut(s)	403, 647
HpyAV	CCTTC	5 cut(s)	35, 125, 241, 630, 667
HpyCH4III	ACNGT	5 cut(s)	124, 178, 358, 407, 500
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	615
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	8 cut(s)	11, 289, 347, 431, 452, 524, 551, 575
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	76, 140
LmnI	GCTCC	1 cut(s)	492
LpnPI	CCDG	8 cut(s)	14, 162, 390, 445, 472, 473, 616, 643
MaeI	CTAG	6 cut(s)	387, 438, 531, 558, 582, 663
MaeIII	GTNAC	3 cut(s)	193, 524, 575
MalI	GATC	2 cut(s)	78, 142
MboI	GATC	2 cut(s)	76, 140
MboII	GAAGA	2 cut(s)	62, 124
MflI	RGATCY	2 cut(s)	76, 140
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	8 cut(s)	97, 357, 433, 500, 521, 548, 572, 665
MmeI	TCCRAC	2 cut(s)	232, 340
MroXI	GAANNNNTTC	2 cut(s)	24, 165
MseI	TTAA	2 cut(s)	92, 209
MspR9I	CCNGG	2 cut(s)	460, 631
MvaI	CCWGG	2 cut(s)	460, 631
MwoI	GCNNNNNNNGC	1 cut(s)	615
NcoI	CCATGG	2 cut(s)	520, 571
NdeII	GATC	2 cut(s)	76, 140
NlaIII	CATG	8 cut(s)	11, 289, 347, 431, 452, 524, 551, 575
NlaIV	GGNNCC	3 cut(s)	37, 78, 518
NmuCI	GTSAC	2 cut(s)	524, 575
PagI	TCATGA	2 cut(s)	285, 547
PdmI	GAANNNNTTC	2 cut(s)	24, 165
PfeI	GAWTC	4 cut(s)	275, 455, 626, 704
PkrI	GCNGC	1 cut(s)	569
PleI	GAGTC	8 cut(s)	97, 357, 432, 500, 521, 548, 572, 664
PpsI	GAGTC	8 cut(s)	97, 357, 432, 500, 521, 548, 572, 664
Psp6I	CCWGG	2 cut(s)	458, 629
PspGI	CCWGG	2 cut(s)	458, 629
PspN4I	GGNNCC	3 cut(s)	37, 78, 518
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	76, 140
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
SalI	GTCGAC	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	92, 209
SatI	GCNGC	1 cut(s)	568
Sau3AI	GATC	2 cut(s)	76, 140
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	8 cut(s)	97, 357, 433, 500, 521, 548, 572, 665
ScrFI	CCNGG	2 cut(s)	460, 631
SetI	ASST	9 cut(s)	48, 98, 233, 473, 497, 542, 593, 668, 689
SmlI	CTYRAG	2 cut(s)	105, 508
SmoI	CTYRAG	2 cut(s)	105, 508
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	3 cut(s)	329, 567, 609
SspMI	CTAG	6 cut(s)	387, 438, 531, 558, 582, 663
StyD4I	CCNGG	2 cut(s)	458, 629
StyI	CCWWGG	2 cut(s)	520, 571
TaaI	ACNGT	5 cut(s)	124, 178, 358, 407, 500
TaqI	TCGA	1 cut(s)	402
TasI	AATT	1 cut(s)	170
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	4 cut(s)	275, 455, 626, 704
Tru1I	TTAA	2 cut(s)	92, 209
Tru9I	TTAA	2 cut(s)	92, 209
TscAI	CASTG	2 cut(s)	127, 285
TseFI	GTSAC	2 cut(s)	524, 575
Tsp45I	GTSAC	2 cut(s)	524, 575
TspDTI	ATGAA	4 cut(s)	174, 274, 302, 426
TspGWI	ACGGA	2 cut(s)	115, 664
TspRI	CASTG	2 cut(s)	127, 285
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	2 cut(s)	24, 165
XspI	CTAG	6 cut(s)	387, 438, 531, 558, 582, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.