Rorug07G0106700

Tobamovirus multiplication protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000322
Physical Location & Seq
Reverse (-)
8348646 .. 8352712
4067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0106700.1

Sequence Viewer

Length: 2238 bp
ATGGGGTGTTGTAGATCATTTCTGCTACTCTTTTTTGCATTGAGTTCTTTATTTTTGGGTAGTCACCAACTACCATCTTCTCAAACCCAAGTGCTTCTACAGCTAAGGAAGCATTTAGAGTACCCAAGCCAGTTGGAAATTTGGAAGGATCATACTGTAGATTTCTGCTCTGTATCTTCATCTGCACAAGTAAACATCACATGCTTGGACAACCTTGTAATTGAGCTCAGCATCAAGGGTGATAAGCCAGCTAAAGTTAGTGGCTTCAATGGGTTTTCAATTCCAGGCCAGACTCTATCAGAGGCCTTCTCATTGGATTCTTTTGTTACTACTCTGGCAAGACTAAGCAGCTTGAAAGTCCTCAGTCTTGTCTCTTTGGGAATCTGGGGTCAACTTCCAGACAAAATTCATAGGTTGACTTCCCTTGAATATCTGGATTTGAGTTCAAACTTTCTCTTTGGTTCAGTCCCACCTCGGATTTCTGCAATGGTGAAGCTTCAAACTCTTGTAATGGATAACAACTTCTTGAATGGCACTGTTCCCAATTGGTTTGGTTCACTATCCAATCTTTCAACTCTAAGCTTTAGAAACAACCAGTTGAAAGGTCCATTACTTGATCTCAGTAGCTTAGGTAGCTTACAAGTGCTTGATTTGAGCGTGAACAAGTTGAATGCTGTATTGCCCTCAATGCCAAAACGGTTGGTCGTGCTTGCCCTCAGCAACAATTCCTTCTCTGGTGAGATTCCTCAGCAATATCGGAAACTAAGCGCGCTTCAACACCTTGACATGTCATTCAACTCACTTACAGGCACACCTCTTGCTGCATTGTTCTCATTGCCAAATATCAGCTACTTGAATTTGGCTTCGAATTTGTTAAGTGGTTCGCTTCCGAGCCATTTAAGCTGTGGCATTAAACTTGATTACATTGATATATCGAACAATAGCTTGACAGGTGACTTGCCTTCTTGTTTGGGAACTAAATCAGGACAGAGAGTTATTAAGTTTGGTGGGAATTGCTTCTCTGTTAGTATGAAAAATCAGCATCCACAGTCATATTGCAATGTAGTAGTCAGTCCAAAGGAGAGACAAACTGGAGGAAAAAAATTAGGAATCTTGGTGGGTGTGATAGTTGGAATACTTGTGCTTTTAGTGCTTCTGGTTTTGAGCTGTATCATTTTGTGTAGAAGATATCTCCCTCGGGGAGTGTCGGAGCAGCATTTGCTGCATAAGCCAGAGCAAGATCACCCAGTAGCAGTAGGGTTCTCCACCGAGATGCTAACAAATGCAAGGTTTATTTCACAAGCAGCCAAGGCAGGCATGCTAGGTCTCCCAGGATGCCGAACTTTTTCATTAGAGGAGTTGGCGGACATTACCAGAAATTTTGACAACTCTGCCTTTTTGGGTGAAGGTTCATACGGGAAGCTTTACAAAGGTAGACTAGAAAATGGGATCCAAGTTGTTATAAGGTGCCTGCAAGTGTCAAAGAAATACACAATTCGAAATCTTAAACTCCGGTTGGATTTGCTTTCCAAGCTTCGTCACCCGCATTTAGTATGCCTTTTAGGACACTGCCTTGACGGTGGTGGAGATGATTACAGTGTGAACAAGGTGTATCTTGTATCTGAGTATGTGGCAAATGGGACCTTATTTCGTGCTAAACTCTCTGGTAGGCCTGAAAAAGTTCTCAACTGGCCACGGAGATTGTCAGTCCTCATCGGTGTGGCCAAGGCTGTGCACTTCCTACATACTGGAATTATTCCAGGTTTCTTGAGCAACCGGCTGAAGATGAACAACATCTTGCTCAATGAGCATGATAATGCAAAATTGAGTGACTACGGAATGTCCATTATCTCAGAAGAAACTGATAAATCTATGGCAAAAGAAGGCTATAAGTCGTGGCAAATGAAAAGTTTAGAGGATGATGCTTATAGCTTCGGATATATATTGCTCGAGGCTATTGTTGGGGCTTCGATCTCTGCTAGAAGAGAGGCATTCCTGCTAAATGATATGGCATCTCTGAACAGCCAGGAAGGCCGAAAGCAGCTAGTAGAATCGATAGTTCTAGCAACTTGTTCACAACAATCTTTATCAATTGTGATCTCCATAATGAACAAGTGCATTTCTCCAGAGGCAAGTCGTCCATCTTTTGAGGACATTCTTTGGAACTTACAGTATGCAGTTCAAGTTCAGGCAACAGCAGACGGAGACAATAGATATGATACTGCATCAAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0016032 GO:0019058 GO:0019079 GO:0044403 GO:0044419 GO:0046786 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS7

Protein Analysis

745

Amino Acids

81.82

Weight (kDa)

8.93

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 110 - 288 2.5e-11 Leucine-rich repeat region
LRR_8 PF13855 165 - 223 7.3e-06 Leucine rich repeat
LRR_8 PF13855 233 - 292 2.7e-07 Leucine rich repeat
Pkinase PF00069 464 - 720 3.2e-18 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 466 - 722 1.7e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000322)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1463
AccB1I GGYRCC 1 cut(s) 1467
AccI GTMKAC 1 cut(s) 1435
AccII CGCG 1 cut(s) 770
AciI CCGC 2 cut(s) 1364, 1544
AclWI GGATC 3 cut(s) 156, 1444, 1457
AcoI YGGCCR 2 cut(s) 1691, 1722
AcsI RAATTY 5 cut(s) 138, 405, 856, 868, 1378
AcuI CTGAAG 1 cut(s) 1802
AfaI GTAC 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 786
AjnI CCWGG 4 cut(s) 283, 1330, 1759, 2025
Alw21I GWGCWC 2 cut(s) 228, 1737
Alw26I GTCTC 4 cut(s) 376, 1078, 1331, 2199
Alw44I GTGCAC 1 cut(s) 1733
AlwI GGATC 3 cut(s) 156, 1444, 1457
Ama87I CYCGRG 2 cut(s) 1197, 1949
AoxI GGCC 6 cut(s) 286, 303, 1670, 1691, 1722, 2032
ApaLI GTGCAC 1 cut(s) 1733
ApeKI GCWGC 6 cut(s) 348, 821, 1213, 1222, 1304, 2041
ApoI RAATTY 5 cut(s) 138, 405, 856, 868, 1378
Asp700I GAANNNNTTC 3 cut(s) 1016, 1345, 1680
AspLEI GCGC 2 cut(s) 770, 772
AspS9I GGNCC 2 cut(s) 605, 1641
AsuHPI GGTGA 8 cut(s) 56, 251, 502, 749, 965, 1235, 1415, 1532
AsuII TTCGAA 2 cut(s) 866, 1498
AvaI CYCGRG 2 cut(s) 1197, 1949
AvaII GGWCC 2 cut(s) 605, 1641
BaeGI GKGCMC 1 cut(s) 1737
BalI TGGCCA 2 cut(s) 1693, 1724
BamHI GGATCC 1 cut(s) 1449
BanI GGYRCC 1 cut(s) 1467
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 228, 1737
BbvCI CCTCAGC 2 cut(s) 716, 747
BbvI GCAGC 6 cut(s) 360, 808, 1209, 1225, 1316, 2053
BccI CCATC 2 cut(s) 82, 2149
BciT130I CCWGG 4 cut(s) 285, 1332, 1761, 2027
BcoDI GTCTC 4 cut(s) 376, 1078, 1331, 2199
BfaI CTAG 5 cut(s) 1322, 1439, 1980, 2045, 2063
BfmI CTRYAG 2 cut(s) 98, 156
BglI GCCNNNNNGGC 1 cut(s) 2031
BisI GCNGC 6 cut(s) 349, 822, 1214, 1223, 1305, 2042
BlpI GCTNAGC 1 cut(s) 227
BlsI GCNGC 6 cut(s) 350, 823, 1215, 1224, 1306, 2043
Bme1390I CCNGG 4 cut(s) 285, 1332, 1761, 2027
Bme18I GGWCC 2 cut(s) 605, 1641
BmeT110I CYCGRG 2 cut(s) 1197, 1949
BmgT120I GGNCC 2 cut(s) 605, 1641
BmiI GGNNCC 3 cut(s) 1451, 1469, 1642
BmrFI CCNGG 4 cut(s) 285, 1332, 1761, 2027
BmrI ACTGGG 1 cut(s) 1241
BmsI GCATC 7 cut(s) 240, 1051, 1263, 1325, 1912, 2021, 2234
BmuI ACTGGG 1 cut(s) 1241
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BpmI CTGGAG 2 cut(s) 1113, 2109
Bpu10I CCTNAGC 4 cut(s) 104, 628, 716, 747
Bpu1102I GCTNAGC 1 cut(s) 227
Bpu14I TTCGAA 2 cut(s) 866, 1498
BpuEI CTTGAG 1 cut(s) 1789
Bsa29I ATCGAT 1 cut(s) 2054
BsaI GGTCTC 1 cut(s) 1331
BsaJI CCNNGG 6 cut(s) 473, 1196, 1308, 1330, 1694, 1725
BsaWI WCCGGW 1 cut(s) 1512
Bse118I RCCGGY 1 cut(s) 1776
Bse1I ACTGG 6 cut(s) 130, 595, 1096, 1247, 1694, 1753
Bse3DI GCAATG 3 cut(s) 492, 833, 1066
BseBI CCWGG 4 cut(s) 285, 1332, 1761, 2027
BseCI ATCGAT 1 cut(s) 2054
BseDI CCNNGG 6 cut(s) 473, 1196, 1308, 1330, 1694, 1725
BseGI GGATG 3 cut(s) 1042, 1340, 1924
BseMI GCAATG 3 cut(s) 492, 833, 1066
BseMII CTCAG 7 cut(s) 241, 376, 634, 730, 761, 1614, 1866
BseNI ACTGG 6 cut(s) 130, 595, 1096, 1247, 1694, 1753
BsePI GCGCGC 1 cut(s) 768
BseRI GAGGAG 1 cut(s) 1370
BseSI GKGCMC 1 cut(s) 1737
BseXI GCAGC 6 cut(s) 360, 808, 1209, 1225, 1316, 2053
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 770
BshFI GGCC 6 cut(s) 288, 305, 1672, 1693, 1724, 2034
BshNI GGYRCC 1 cut(s) 1467
BshVI ATCGAT 1 cut(s) 2054
BsiHKAI GWGCWC 2 cut(s) 228, 1737
BsiHKCI CYCGRG 2 cut(s) 1197, 1949
BsiSI CCGG 2 cut(s) 1513, 1777
BslFI GGGAC 2 cut(s) 452, 1654
BsmAI GTCTC 4 cut(s) 376, 1078, 1331, 2199
BsmFI GGGAC 2 cut(s) 452, 1654
BsmI GAATGC 2 cut(s) 676, 1991
BsnI GGCC 6 cut(s) 288, 305, 1672, 1693, 1724, 2034
Bso31I GGTCTC 1 cut(s) 1331
BsoBI CYCGRG 2 cut(s) 1197, 1949
Bsp119I TTCGAA 2 cut(s) 866, 1498
Bsp1286I GDGCHC 2 cut(s) 228, 1737
Bsp143I GATC 7 cut(s) 14, 148, 616, 1240, 1449, 1971, 2097
Bsp1720I GCTNAGC 1 cut(s) 227
BspACI CCGC 2 cut(s) 1364, 1544
BspANI GGCC 6 cut(s) 288, 305, 1672, 1693, 1724, 2034
BspCNI CTCAG 7 cut(s) 240, 375, 633, 729, 760, 1615, 1865
BspDI ATCGAT 1 cut(s) 2054
BspFNI CGCG 1 cut(s) 770
BspLI GGNNCC 3 cut(s) 1451, 1469, 1642
BspPI GGATC 3 cut(s) 156, 1444, 1457
BspT104I TTCGAA 2 cut(s) 866, 1498
BspT107I GGYRCC 1 cut(s) 1467
BspTNI GGTCTC 1 cut(s) 1331
BsrDI GCAATG 3 cut(s) 492, 833, 1066
BsrFI RCCGGY 1 cut(s) 1776
BsrI ACTGG 6 cut(s) 130, 595, 1096, 1247, 1694, 1753
BssAI RCCGGY 1 cut(s) 1776
BssECI CCNNGG 6 cut(s) 473, 1196, 1308, 1330, 1694, 1725
BssHII GCGCGC 1 cut(s) 768
BssMI GATC 7 cut(s) 14, 148, 616, 1240, 1449, 1971, 2097
BssT1I CCWWGG 2 cut(s) 1308, 1725
Bst2UI CCWGG 4 cut(s) 285, 1332, 1761, 2027
Bst4CI ACNGT 7 cut(s) 157, 538, 699, 1050, 1580, 1598, 2172
Bst6I CTCTTC 1 cut(s) 1978
BstAPI GCANNNNNTGC 2 cut(s) 1219, 1222
BstBI TTCGAA 2 cut(s) 866, 1498
BstC8I GCNNGC 6 cut(s) 249, 711, 770, 1315, 1319, 1472
BstDSI CCRYGG 1 cut(s) 1694
BstF5I GGATG 3 cut(s) 1042, 1340, 1924
BstFNI CGCG 1 cut(s) 770
BstHHI GCGC 2 cut(s) 770, 772
BstKTI GATC 7 cut(s) 17, 151, 619, 1243, 1452, 1974, 2100
BstMAI GTCTC 4 cut(s) 376, 1078, 1331, 2199
BstMBI GATC 7 cut(s) 14, 148, 616, 1240, 1449, 1971, 2097
BstNI CCWGG 4 cut(s) 285, 1332, 1761, 2027
BstNSI RCATGY 3 cut(s) 204, 790, 1321
BstSCI CCNGG 4 cut(s) 283, 1330, 1759, 2025
BstSFI CTRYAG 2 cut(s) 98, 156
BstSLI GKGCMC 1 cut(s) 1737
BstUI CGCG 1 cut(s) 770
BstV1I GCAGC 6 cut(s) 360, 808, 1209, 1225, 1316, 2053
BstX2I RGATCY 1 cut(s) 1449
BstYI RGATCY 1 cut(s) 1449
Bsu15I ATCGAT 1 cut(s) 2054
BsuRI GGCC 6 cut(s) 288, 305, 1672, 1693, 1724, 2034
BsuTUI ATCGAT 1 cut(s) 2054
BtgI CCRYGG 1 cut(s) 1694
BtsCI GGATG 3 cut(s) 1042, 1340, 1924
BtsI GCAGTG 1 cut(s) 1567
BtsIMutI CAGTG 3 cut(s) 534, 1567, 1603
Cac8I GCNNGC 6 cut(s) 249, 711, 770, 1315, 1319, 1472
CfoI GCGC 2 cut(s) 770, 772
Cfr10I RCCGGY 1 cut(s) 1776
Cfr13I GGNCC 2 cut(s) 605, 1641
ClaI ATCGAT 1 cut(s) 2054
Csp6I GTAC 1 cut(s) 121
CspCI CAANNNNNGTGG 2 cut(s) 1683, 1718
CviAII CATG 4 cut(s) 201, 787, 1318, 1811
CviQI GTAC 1 cut(s) 121
DpnI GATC 7 cut(s) 16, 150, 618, 1242, 1451, 1973, 2099
DpnII GATC 7 cut(s) 14, 148, 616, 1240, 1449, 1971, 2097
EaeI YGGCCR 2 cut(s) 1691, 1722
Eam1104I CTCTTC 1 cut(s) 1978
EarI CTCTTC 1 cut(s) 1978
EciI GGCGGA 1 cut(s) 1379
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 2 cut(s) 1308, 1725
Eco147I AGGCCT 2 cut(s) 305, 1672
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 1331
Eco32I GATATC 1 cut(s) 1190
Eco47I GGWCC 2 cut(s) 605, 1641
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 1802
Eco88I CYCGRG 2 cut(s) 1197, 1949
EcoICRI GAGCTC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 1641
EcoRII CCWGG 4 cut(s) 283, 1330, 1759, 2025
EcoRV GATATC 1 cut(s) 1190
EcoT14I CCWWGG 2 cut(s) 1308, 1725
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 2 cut(s) 1308, 1725
FaeI CATG 4 cut(s) 204, 790, 1321, 1814
FaqI GGGAC 2 cut(s) 452, 1654
FatI CATG 4 cut(s) 200, 786, 1317, 1810
FauI CCCGC 1 cut(s) 1551
FblI GTMKAC 1 cut(s) 1435
Fnu4HI GCNGC 6 cut(s) 349, 822, 1214, 1223, 1305, 2042
FokI GGATG 3 cut(s) 1029, 1347, 1931
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 6 cut(s) 349, 822, 1214, 1223, 1305, 2042
FspBI CTAG 5 cut(s) 1322, 1439, 1980, 2045, 2063
GlaI GCGC 2 cut(s) 769, 771
GluI GCNGC 6 cut(s) 349, 822, 1214, 1223, 1305, 2042
GsuI CTGGAG 2 cut(s) 1113, 2109
HaeIII GGCC 6 cut(s) 288, 305, 1672, 1693, 1724, 2034
HapII CCGG 2 cut(s) 1513, 1777
HhaI GCGC 2 cut(s) 770, 772
Hin1II CATG 4 cut(s) 204, 790, 1321, 1814
Hin6I GCGC 2 cut(s) 768, 770
HinP1I GCGC 2 cut(s) 768, 770
HincII GTYRAC 2 cut(s) 392, 417
HindII GTYRAC 2 cut(s) 392, 417
HindIII AAGCTT 4 cut(s) 494, 580, 1421, 1532
HinfI GANTC 6 cut(s) 292, 317, 381, 742, 1110, 2051
HpaII CCGG 2 cut(s) 1513, 1777
HphI GGTGA 8 cut(s) 56, 251, 502, 749, 965, 1235, 1415, 1532
Hpy166II GTNNAC 9 cut(s) 193, 392, 417, 557, 661, 1436, 1603, 1735, 2075
Hpy188I TCNGA 9 cut(s) 301, 477, 759, 891, 1210, 1624, 1855, 1937, 2019
Hpy188III TCNNGA 6 cut(s) 398, 434, 526, 984, 1768, 2126
Hpy8I GTNNAC 9 cut(s) 193, 392, 417, 557, 661, 1436, 1603, 1735, 2075
HpyAV CCTTC 7 cut(s) 139, 316, 739, 972, 1400, 1877, 2024
HpyCH4III ACNGT 7 cut(s) 157, 538, 699, 1050, 1580, 1598, 2172
Hsp92II CATG 4 cut(s) 204, 790, 1321, 1814
HspAI GCGC 2 cut(s) 768, 770
Kzo9I GATC 7 cut(s) 14, 148, 616, 1240, 1449, 1971, 2097
LmnI GCTCC 1 cut(s) 1210
Lsp1109I GCAGC 6 cut(s) 360, 808, 1209, 1225, 1316, 2053
LweI GCATC 7 cut(s) 240, 1051, 1263, 1325, 1912, 2021, 2234
MaeI CTAG 5 cut(s) 1322, 1439, 1980, 2045, 2063
MaeIII GTNAC 5 cut(s) 62, 325, 953, 1538, 1829
MalI GATC 7 cut(s) 16, 150, 618, 1242, 1451, 1973, 2099
MboI GATC 7 cut(s) 14, 148, 616, 1240, 1449, 1971, 2097
MboII GAAGA 6 cut(s) 69, 168, 1197, 1795, 1868, 1995
MfeI CAATTG 2 cut(s) 544, 2091
MflI RGATCY 1 cut(s) 1449
MhlI GDGCHC 2 cut(s) 228, 1737
MlsI TGGCCA 2 cut(s) 1693, 1724
MluNI TGGCCA 2 cut(s) 1693, 1724
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 4 cut(s) 114, 1111, 1188, 1497
Mox20I TGGCCA 2 cut(s) 1693, 1724
MroXI GAANNNNTTC 3 cut(s) 1016, 1345, 1680
MscI TGGCCA 2 cut(s) 1693, 1724
MseI TTAA 5 cut(s) 875, 899, 912, 999, 1506
MslI CAYNNNNRTG 3 cut(s) 1271, 1718, 1815
Msp20I TGGCCA 2 cut(s) 1693, 1724
MspI CCGG 2 cut(s) 1513, 1777
MspR9I CCNGG 4 cut(s) 285, 1332, 1761, 2027
MunI CAATTG 2 cut(s) 544, 2091
Mva1269I GAATGC 2 cut(s) 676, 1991
MvaI CCWGG 4 cut(s) 285, 1332, 1761, 2027
MvnI CGCG 1 cut(s) 770
NdeII GATC 7 cut(s) 14, 148, 616, 1240, 1449, 1971, 2097
NlaIII CATG 4 cut(s) 204, 790, 1321, 1814
NlaIV GGNNCC 3 cut(s) 1451, 1469, 1642
NmuCI GTSAC 4 cut(s) 62, 953, 1538, 1829
NspI RCATGY 3 cut(s) 204, 790, 1321
NspV TTCGAA 2 cut(s) 866, 1498
PaeI GCATGC 1 cut(s) 1321
PaeR7I CTCGAG 1 cut(s) 1949
PauI GCGCGC 1 cut(s) 768
PceI AGGCCT 2 cut(s) 305, 1672
PciI ACATGT 1 cut(s) 786
PctI GAATGC 2 cut(s) 676, 1991
PdmI GAANNNNTTC 3 cut(s) 1016, 1345, 1680
PfeI GAWTC 5 cut(s) 317, 381, 742, 1110, 2051
PkrI GCNGC 6 cut(s) 350, 823, 1215, 1224, 1306, 2043
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 1641
PscI ACATGT 1 cut(s) 786
PsiI TTATAA 1 cut(s) 1463
Psp124BI GAGCTC 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 1641
Psp6I CCWGG 4 cut(s) 283, 1330, 1759, 2025
PspGI CCWGG 4 cut(s) 283, 1330, 1759, 2025
PspN4I GGNNCC 3 cut(s) 1451, 1469, 1642
PspPI GGNCC 2 cut(s) 605, 1641
PspPPI RGGWCCY 1 cut(s) 1641
PspXI VCTCGAGB 1 cut(s) 1949
PsuI RGATCY 1 cut(s) 1449
PteI GCGCGC 1 cut(s) 768
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 3 cut(s) 1271, 1718, 1815
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 5 cut(s) 875, 899, 912, 999, 1506
SatI GCNGC 6 cut(s) 349, 822, 1214, 1223, 1305, 2042
Sau3AI GATC 7 cut(s) 14, 148, 616, 1240, 1449, 1971, 2097
Sau96I GGNCC 2 cut(s) 605, 1641
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 4 cut(s) 285, 1332, 1761, 2027
SduI GDGCHC 2 cut(s) 228, 1737
SfaNI GCATC 7 cut(s) 240, 1051, 1263, 1325, 1912, 2021, 2234
SfcI CTRYAG 2 cut(s) 98, 156
Sfr274I CTCGAG 1 cut(s) 1949
SfuI TTCGAA 2 cut(s) 866, 1498
SinI GGWCC 2 cut(s) 605, 1641
SlaI CTCGAG 1 cut(s) 1949
SmiMI CAYNNNNRTG 3 cut(s) 1271, 1718, 1815
SmlI CTYRAG 2 cut(s) 1768, 1949
SmoI CTYRAG 2 cut(s) 1768, 1949
SphI GCATGC 1 cut(s) 1321
SseBI AGGCCT 2 cut(s) 305, 1672
SsiI CCGC 2 cut(s) 1364, 1544
SspMI CTAG 5 cut(s) 1322, 1439, 1980, 2045, 2063
SstI GAGCTC 1 cut(s) 228
StuI AGGCCT 2 cut(s) 305, 1672
StyD4I CCNGG 4 cut(s) 283, 1330, 1759, 2025
StyI CCWWGG 2 cut(s) 1308, 1725
TaaI ACNGT 7 cut(s) 157, 538, 699, 1050, 1580, 1598, 2172
TaqI TCGA 6 cut(s) 866, 935, 1498, 1950, 1970, 2054
TfiI GAWTC 5 cut(s) 317, 381, 742, 1110, 2051
Tru1I TTAA 5 cut(s) 875, 899, 912, 999, 1506
Tru9I TTAA 5 cut(s) 875, 899, 912, 999, 1506
TscAI CASTG 3 cut(s) 541, 1574, 1603
TseFI GTSAC 4 cut(s) 62, 953, 1538, 1829
TseI GCWGC 6 cut(s) 348, 821, 1213, 1222, 1304, 2041
Tsp45I GTSAC 4 cut(s) 62, 953, 1538, 1829
TspDTI ATGAA 8 cut(s) 168, 398, 1046, 1338, 1401, 1802, 1919, 2123
TspGWI ACGGA 3 cut(s) 1711, 1851, 2217
TspRI CASTG 3 cut(s) 541, 1574, 1603
VneI GTGCAC 1 cut(s) 1733
VpaK11BI GGWCC 2 cut(s) 605, 1641
XapI RAATTY 5 cut(s) 138, 405, 856, 868, 1378
XceI RCATGY 3 cut(s) 204, 790, 1321
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
XhoI CTCGAG 1 cut(s) 1949
XmiI GTMKAC 1 cut(s) 1435
XmnI GAANNNNTTC 3 cut(s) 1016, 1345, 1680
XspI CTAG 5 cut(s) 1322, 1439, 1980, 2045, 2063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.