Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

10781787 .. 10788152

Gene Structure 6366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0070100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGAACTGCTCAATCTCCGGTGAGGTGCCGGAAGAGCCCGTGGTCTCCAGGAAGTCCGGCCTGCTCTTCGAGAAGCGGTTAATAGAGCGCCACATCTCGGAATATGGAAAATGCCCAATCACTGGCGAAGCACTTACCGCCGAGGATATTGTTCCGGTTAAAACTGGCAAGATAGTGAGGCCGAGACCTGTACAAGCTGCGAGCATCCCTGGCATGCTCGGAATGTTTCAGAATGAATGGGATAGTTTGATGCTTTCCAATTTTGCGATGGAGCAACAACTACATACAGCAAGGCAAGAGTTAAGTCATGCTTTGTATCAGCATGATGCTGCTTGTCGTGTTATTGCAAGACTCAAAAAGGAGAGGGACGAAGCAAGATCTTTACTTGCTCAGGCTGACAGACAAATTCCTATGTCAACCCCATCTGCTGTTGCAGTGAATGCTTCTGTCCATAGCAATGGAACACAAGTTGCTGATGACCAGTTGGGATCTGGTGTGAGGAATATACGCCCTGGGATATCTCCTAATATCCTAGCTGAGCTGACAGATTGTAATACAGCACTATCACAGCAGCGAAAGAAGCGACAGATATCCTCCACGTTGGCTCCTATTGATGCTTTGGAGAGGTATACTCAGATATCCAGTCATCCTCTTCATAAAACAAGCAAACCAGGAATTTTGTCGATCGATATTCATCATGAGAAGGACATCATTGCAACCGGAGGGGTTGATACAAATGCTGTAATCTTTGATCAACCATCAGGCCAAATTTTATCTACTCTTAGTGGTCATTCAAAGAAGGTTACCAGCGTTAAATTTGTAGGTCGCGATAATCTGGTCATAACTGGGTCGGCCGACAAGACAGTTCGCATATGGCAAGGCTCTGATGATGGGAACTACAACTGTAACCACACTTTGAAGGATCATACAGCTGAGGTGCAAGCTGTTACTGTACATGCCACAAATAACTACTTCGTGACTGCATCTCTTGATAGTACATGGTGCTTTTACGATATTTCCTCTGGGTTATGTCTGACACAGGTTGAGGATACTTCAGCATCTCAGGGTTACACATCTGTGGCCTTTCATCCTGATGGTCTCATCCTCGGAGCAGGTACCTCAGAGGCTGTTGTCAAAATTTGGGACGTAAAGAGTCAGACAAGGGTTGCAAAGTTTGATGGACATGTTGGGGCAGTAACTTCCATCTCCTTCTCCGAAAATGGTTACTTTCTGGCGACCGCTGCTAGTGATGGTGTTAAACTTTGGGATCTGCGCAAATTAAGGAACTTCAGGACATTTACTCCATATGGTCCTGATACGCCAACAAACTCTGTTGAATTTGACTTCAGCGGGAGTTACCTTGCAGCTGCAGGCTCCGATATAAGAGTCTTCCAAGCTACTAGTGTCAAATCAGAATGGAACACCATCAAAACTTTCCCTGATATGTCAGGCACAGGTAAAGCAACTAGTGTAAAATTTGGCCCAGATGCCAAATATATTGCAGTAGGATCAATGGACCGAAACCTACGGATTTTTGGCTTGCCTGGCAATGATGTTGAGATGGAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

523

Amino Acids

56.83

Weight (kDa)

6.32

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prp19	PF08606	66 - 131	2e-30	Prp19/Pso4-like
WD40_Prp19	PF24814	218 - 506	1.8e-107	Prp19 WD40 domain
Beta-prop_DCAF12	PF23760	218 - 307	1.1e-06	DDB1- and CUL4-associated factor 12 beta propeller
Beta-prop_WDR5	PF25175	221 - 367	5.9e-25	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	224 - 339	1.3e-19	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	225 - 337	7.8e-14	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	225 - 345	3.4e-10	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	225 - 387	1.5e-14	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd	PF24782	226 - 293	4e-08	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	226 - 298	1.1e-08	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	226 - 423	4.9e-11	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2	PF23414	226 - 313	3.5e-06	Echinoderm microtubule-associated protein second beta-propeller
EIF3I	PF24805	227 - 294	6.8e-06	EIF3I
Beta-prop_WDR19_1st	PF23389	233 - 456	3.9e-06	WDR19 first beta-propeller
WD40	PF00400	255 - 292	4.8e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	258 - 352	1.9e-07	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	261 - 353	9.5e-08	EIF3I
Beta-prop_THOC3	PF25174	264 - 512	8.3e-39	THOC3 beta-propeller domain
WDR55	PF24796	266 - 424	4.9e-14	WDR55
WD40_MABP1-WDR62_2nd	PF24782	299 - 422	2.1e-07	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	300 - 426	3.3e-08	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	306 - 459	8.9e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	314 - 418	4.8e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	319 - 419	1.8e-10	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	322 - 512	9.5e-14	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	323 - 429	9.4e-06	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	352 - 464	2.1e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	354 - 512	8.6e-20	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	354 - 512	2.5e-15	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	357 - 422	5.9e-06	WDR3 second beta-propeller domain
EIF3I	PF24805	358 - 512	1.2e-08	EIF3I
Beta-prop_WDR3_1st	PF25173	358 - 461	9e-15	WDR3 first beta-propeller domain
WD40	PF00400	388 - 423	6e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1274
Acc36I	ACCTGC	1 cut(s)	1103
Acc65I	GGTACC	1 cut(s)	1115
AccB1I	GGYRCC	2 cut(s)	25, 1115
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	629
AccII	CGCG	1 cut(s)	828
AciI	CCGC	4 cut(s)	76, 138, 1239, 1350
AclWI	GGATC	4 cut(s)	496, 930, 1275, 1516
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	7 cut(s)	405, 675, 768, 815, 1137, 1337, 1475
AcuI	CTGAAG	3 cut(s)	1038, 1273, 1330
AfaI	GTAC	4 cut(s)	192, 954, 997, 1117
AfiI	CCNNNNNNNGG	2 cut(s)	97, 122
AflIII	ACRYGT	1 cut(s)	1183
AgsI	TTSAA	3 cut(s)	795, 919, 1337
AhlI	ACTAGT	2 cut(s)	1400, 1466
AjnI	CCWGG	5 cut(s)	47, 208, 511, 670, 1543
AleI	CACNNNNGTG	1 cut(s)	1076
AluBI	AGCT	7 cut(s)	197, 536, 541, 932, 944, 1367, 1397
AluI	AGCT	7 cut(s)	197, 536, 541, 932, 944, 1367, 1397
Alw26I	GTCTC	3 cut(s)	49, 178, 1103
AlwI	GGATC	4 cut(s)	496, 930, 1275, 1516
AlwNI	CAGNNNCTG	1 cut(s)	1127
AoxI	GGCC	6 cut(s)	58, 179, 763, 852, 1080, 1480
ApeKI	GCWGC	6 cut(s)	197, 329, 571, 1241, 1364, 1367
ApoI	RAATTY	7 cut(s)	405, 675, 768, 815, 1137, 1337, 1475
Asp718I	GGTACC	1 cut(s)	1115
AspLEI	GCGC	2 cut(s)	90, 1275
AspS9I	GGNCC	3 cut(s)	1310, 1481, 1516
AsuHPI	GGTGA	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	1310, 1516
BanI	GGYRCC	2 cut(s)	25, 1115
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	1381
BbvCI	CCTCAGC	1 cut(s)	933
BbvI	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
BciT130I	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
BciVI	GTATCC	1 cut(s)	1042
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	3 cut(s)	49, 178, 1103
BcuI	ACTAGT	2 cut(s)	1400, 1466
BfaI	CTAG	4 cut(s)	533, 1245, 1401, 1467
BfmI	CTRYAG	1 cut(s)	1368
BfoI	RGCGCY	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	1103
BfuI	GTATCC	1 cut(s)	1042
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	6 cut(s)	199, 331, 573, 1243, 1366, 1369
Bme1390I	CCNGG	5 cut(s)	49, 210, 513, 672, 1545
Bme18I	GGWCC	2 cut(s)	1310, 1516
BmgT120I	GGNCC	3 cut(s)	1310, 1481, 1516
BmiI	GGNNCC	4 cut(s)	27, 606, 1117, 1375
BmrFI	CCNGG	5 cut(s)	49, 210, 513, 672, 1545
BmrI	ACTGGG	1 cut(s)	855
BmsI	GCATC	7 cut(s)	213, 240, 316, 604, 992, 1067, 1477
BmuI	ACTGGG	1 cut(s)	855
BpiI	GAAGAC	1 cut(s)	1381
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	2 cut(s)	390, 933
Bpu1102I	GCTNAGC	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	693
BsaI	GGTCTC	3 cut(s)	49, 178, 1103
BsaJI	CCNNGG	6 cut(s)	39, 141, 208, 511, 512, 1105
BsaWI	WCCGGW	3 cut(s)	17, 154, 719
BsaXI	ACNNNNNCTCC	4 cut(s)	589, 619, 1285, 1315
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 122
Bse1I	ACTGG	5 cut(s)	127, 169, 481, 642, 850
Bse3DI	GCAATG	3 cut(s)	463, 711, 1555
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	6 cut(s)	39, 141, 208, 511, 512, 1105
BseGI	GGATG	4 cut(s)	204, 646, 1087, 1101
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	2 cut(s)	97, 122
BseMI	GCAATG	3 cut(s)	463, 711, 1555
BseMII	CTCAG	6 cut(s)	404, 528, 647, 924, 1076, 1134
BseNI	ACTGG	5 cut(s)	127, 169, 481, 642, 850
BseX3I	CGGCCG	1 cut(s)	852
BseXI	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
Bsh1236I	CGCG	1 cut(s)	828
Bsh1285I	CGRYCG	3 cut(s)	687, 855, 1239
BshFI	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
BshNI	GGYRCC	2 cut(s)	25, 1115
BshVI	ATCGAT	1 cut(s)	687
BsiEI	CGRYCG	3 cut(s)	687, 855, 1239
BsiSI	CCGG	5 cut(s)	18, 29, 57, 155, 720
BslFI	GGGAC	2 cut(s)	380, 1157
BslI	CCNNNNNNNGG	2 cut(s)	97, 122
BsmAI	GTCTC	3 cut(s)	49, 178, 1103
BsmFI	GGGAC	2 cut(s)	380, 1157
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
Bso31I	GGTCTC	3 cut(s)	49, 178, 1103
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp1407I	TGTACA	2 cut(s)	190, 952
Bsp143I	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
Bsp1720I	GCTNAGC	1 cut(s)	537
Bsp68I	TCGCGA	1 cut(s)	828
BspACI	CCGC	4 cut(s)	76, 138, 1239, 1350
BspANI	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
BspCNI	CTCAG	6 cut(s)	403, 529, 646, 925, 1075, 1133
BspDI	ATCGAT	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	828
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	4 cut(s)	27, 606, 1117, 1375
BspMAI	CTGCAG	1 cut(s)	1372
BspMI	ACCTGC	1 cut(s)	1103
BspPI	GGATC	4 cut(s)	496, 930, 1275, 1516
BspQI	GCTCTTC	2 cut(s)	27, 71
BspT107I	GGYRCC	2 cut(s)	25, 1115
BspTNI	GGTCTC	3 cut(s)	49, 178, 1103
BsrDI	GCAATG	3 cut(s)	463, 711, 1555
BsrGI	TGTACA	2 cut(s)	190, 952
BsrI	ACTGG	5 cut(s)	127, 169, 481, 642, 850
BssECI	CCNNGG	6 cut(s)	39, 141, 208, 511, 512, 1105
BssMI	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
BssNAI	GTATAC	1 cut(s)	630
Bst1107I	GTATAC	1 cut(s)	630
Bst2UI	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
Bst4CI	ACNGT	3 cut(s)	865, 905, 952
Bst6I	CTCTTC	3 cut(s)	27, 71, 657
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstAUI	TGTACA	2 cut(s)	190, 952
BstC8I	GCNNGC	6 cut(s)	62, 202, 215, 942, 1372, 1541
BstDEI	CTNAG	7 cut(s)	390, 537, 633, 782, 933, 1062, 1120
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	802
BstF5I	GGATG	4 cut(s)	204, 646, 1087, 1101
BstFNI	CGCG	1 cut(s)	828
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	90, 1275
BstKTI	GATC	7 cut(s)	380, 491, 687, 754, 925, 1270, 1511
BstMAI	GTCTC	3 cut(s)	49, 178, 1103
BstMBI	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
BstMCI	CGRYCG	3 cut(s)	687, 855, 1239
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 137, 210, 440, 580, 1241, 1545
BstNI	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
BstNSI	RCATGY	3 cut(s)	217, 959, 1187
BstPI	GGTNACC	1 cut(s)	802
BstSCI	CCNGG	5 cut(s)	47, 208, 511, 670, 1543
BstSFI	CTRYAG	1 cut(s)	1368
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
BstV2I	GAAGAC	1 cut(s)	1381
BstX2I	RGATCY	3 cut(s)	377, 488, 1267
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	3 cut(s)	377, 488, 1267
BstZ17I	GTATAC	1 cut(s)	630
BstZI	CGGCCG	1 cut(s)	852
Bsu15I	ATCGAT	1 cut(s)	687
BsuI	GTATCC	1 cut(s)	1042
BsuRI	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
BsuTUI	ATCGAT	1 cut(s)	687
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	4 cut(s)	204, 646, 1087, 1101
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	120, 441
BtuMI	TCGCGA	1 cut(s)	828
BveI	ACCTGC	1 cut(s)	1103
Cac8I	GCNNGC	6 cut(s)	62, 202, 215, 942, 1372, 1541
CaiI	CAGNNNCTG	1 cut(s)	1127
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	2 cut(s)	90, 1275
Cfr13I	GGNCC	3 cut(s)	1310, 1481, 1516
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	4 cut(s)	191, 953, 996, 1116
CviAII	CATG	7 cut(s)	214, 308, 323, 698, 956, 999, 1184
CviQI	GTAC	4 cut(s)	191, 953, 996, 1116
DdeI	CTNAG	7 cut(s)	390, 537, 633, 782, 933, 1062, 1120
DpnI	GATC	7 cut(s)	379, 490, 686, 753, 924, 1269, 1510
DpnII	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
EaeI	YGGCCR	1 cut(s)	852
EagI	CGGCCG	1 cut(s)	852
Eam1104I	CTCTTC	3 cut(s)	27, 71, 657
EarI	CTCTTC	3 cut(s)	27, 71, 657
EclXI	CGGCCG	1 cut(s)	852
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	3 cut(s)	49, 178, 1103
Eco32I	GATATC	3 cut(s)	519, 591, 639
Eco47I	GGWCC	2 cut(s)	1310, 1516
Eco52I	CGGCCG	1 cut(s)	852
Eco57I	CTGAAG	3 cut(s)	1038, 1273, 1330
Eco91I	GGTNACC	1 cut(s)	802
EcoO65I	GGTNACC	1 cut(s)	802
EcoRII	CCWGG	5 cut(s)	47, 208, 511, 670, 1543
EcoRV	GATATC	3 cut(s)	519, 591, 639
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	7 cut(s)	217, 311, 326, 701, 959, 1002, 1187
FalI	AAGNNNNNCTT	2 cut(s)	295, 327
FaqI	GGGAC	2 cut(s)	380, 1157
FatI	CATG	7 cut(s)	213, 307, 322, 697, 955, 998, 1183
FauI	CCCGC	1 cut(s)	1343
FauNDI	CATATG	2 cut(s)	872, 1306
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
FokI	GGATG	4 cut(s)	191, 633, 1074, 1088
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
FspBI	CTAG	4 cut(s)	533, 1245, 1401, 1467
FspI	TGCGCA	1 cut(s)	1274
GlaI	GCGC	2 cut(s)	89, 1274
GluI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	6 cut(s)	60, 181, 765, 854, 1082, 1482
HapII	CCGG	5 cut(s)	18, 29, 57, 155, 720
HhaI	GCGC	2 cut(s)	90, 1275
Hin1II	CATG	7 cut(s)	217, 311, 326, 701, 959, 1002, 1187
Hin6I	GCGC	2 cut(s)	88, 1273
HinP1I	GCGC	2 cut(s)	88, 1273
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	4 cut(s)	351, 1153, 1386, 1565
HpaII	CCGG	5 cut(s)	18, 29, 57, 155, 720
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	417, 630
Hpy188III	TCNNGA	9 cut(s)	70, 698, 827, 976, 989, 1091, 1291, 1313, 1569
Hpy8I	GTNNAC	2 cut(s)	417, 630
HpyAV	CCTTC	4 cut(s)	697, 793, 913, 1219
HpyCH4III	ACNGT	3 cut(s)	865, 905, 952
HpyCH4IV	ACGT	2 cut(s)	599, 1146
HpyCH4V	TGCA	9 cut(s)	347, 434, 716, 940, 983, 1169, 1364, 1370, 1502
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 137, 210, 440, 580, 1241, 1545
HpyF3I	CTNAG	7 cut(s)	390, 537, 633, 782, 933, 1062, 1120
HpySE526I	ACGT	2 cut(s)	599, 1146
Hsp92II	CATG	7 cut(s)	217, 311, 326, 701, 959, 1002, 1187
HspAI	GCGC	2 cut(s)	88, 1273
KpnI	GGTACC	1 cut(s)	1119
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
LguI	GCTCTTC	2 cut(s)	27, 71
LmnI	GCTCC	4 cut(s)	271, 610, 1109, 1379
Lsp1109I	GCAGC	6 cut(s)	184, 316, 583, 1228, 1354, 1376
LweI	GCATC	7 cut(s)	213, 240, 316, 604, 992, 1067, 1477
MaeI	CTAG	4 cut(s)	533, 1245, 1401, 1467
MaeII	ACGT	2 cut(s)	599, 1146
MaeIII	GTNAC	8 cut(s)	802, 905, 946, 976, 1067, 1195, 1223, 1355
MalI	GATC	7 cut(s)	379, 490, 686, 753, 924, 1269, 1510
MboI	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
MboII	GAAGA	4 cut(s)	44, 58, 644, 1381
MflI	RGATCY	3 cut(s)	377, 488, 1267
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	9 cut(s)	259, 405, 675, 768, 815, 1137, 1277, 1337, 1475
MlyI	GAGTC	3 cut(s)	345, 1162, 1395
MseI	TTAA	6 cut(s)	80, 159, 302, 813, 1257, 1280
MslI	CAYNNNNRTG	3 cut(s)	456, 1076, 1092
MspA1I	CMGCKG	4 cut(s)	932, 1241, 1350, 1367
MspI	CCGG	5 cut(s)	18, 29, 57, 155, 720
MspR9I	CCNGG	5 cut(s)	49, 210, 513, 672, 1545
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	5 cut(s)	49, 210, 513, 672, 1545
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	7 cut(s)	34, 137, 210, 440, 580, 1241, 1545
NdeI	CATATG	2 cut(s)	872, 1306
NdeII	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
NlaIII	CATG	7 cut(s)	217, 311, 326, 701, 959, 1002, 1187
NlaIV	GGNNCC	4 cut(s)	27, 606, 1117, 1375
NmeAIII	GCCGAG	2 cut(s)	166, 207
NmuCI	GTSAC	1 cut(s)	976
NruI	TCGCGA	1 cut(s)	828
NsbI	TGCGCA	1 cut(s)	1274
NspI	RCATGY	3 cut(s)	217, 959, 1187
OliI	CACNNNNGTG	1 cut(s)	1076
PaeI	GCATGC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	697
PasI	CCCWGGG	1 cut(s)	512
PciI	ACATGT	1 cut(s)	1183
PciSI	GCTCTTC	2 cut(s)	27, 71
PctI	GAATGC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	6 cut(s)	199, 331, 573, 1243, 1366, 1369
Ple19I	CGATCG	1 cut(s)	687
PleI	GAGTC	3 cut(s)	345, 1161, 1394
PpsI	GAGTC	3 cut(s)	345, 1161, 1394
PscI	ACATGT	1 cut(s)	1183
Psp6I	CCWGG	5 cut(s)	47, 208, 511, 670, 1543
PspEI	GGTNACC	1 cut(s)	802
PspGI	CCWGG	5 cut(s)	47, 208, 511, 670, 1543
PspN4I	GGNNCC	4 cut(s)	27, 606, 1117, 1375
PspPI	GGNCC	3 cut(s)	1310, 1481, 1516
PstI	CTGCAG	1 cut(s)	1372
PstNI	CAGNNNCTG	1 cut(s)	1127
PsuI	RGATCY	3 cut(s)	377, 488, 1267
PvuI	CGATCG	1 cut(s)	687
PvuII	CAGCTG	2 cut(s)	932, 1367
RruI	TCGCGA	1 cut(s)	828
RsaI	GTAC	4 cut(s)	192, 954, 997, 1117
RsaNI	GTAC	4 cut(s)	191, 953, 996, 1116
RseI	CAYNNNNRTG	3 cut(s)	456, 1076, 1092
SapI	GCTCTTC	2 cut(s)	27, 71
SaqAI	TTAA	6 cut(s)	80, 159, 302, 813, 1257, 1280
SatI	GCNGC	6 cut(s)	198, 330, 572, 1242, 1365, 1368
Sau3AI	GATC	7 cut(s)	377, 488, 684, 751, 922, 1267, 1508
Sau96I	GGNCC	3 cut(s)	1310, 1481, 1516
SchI	GAGTC	3 cut(s)	345, 1162, 1395
ScrFI	CCNGG	5 cut(s)	49, 210, 513, 672, 1545
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	7 cut(s)	213, 240, 316, 604, 992, 1067, 1477
SfcI	CTRYAG	1 cut(s)	1368
SinI	GGWCC	2 cut(s)	1310, 1516
SmiMI	CAYNNNNRTG	3 cut(s)	456, 1076, 1092
SpeI	ACTAGT	2 cut(s)	1400, 1466
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	9 cut(s)	259, 405, 675, 768, 815, 1137, 1277, 1337, 1475
SsiI	CCGC	4 cut(s)	76, 138, 1239, 1350
SspMI	CTAG	4 cut(s)	533, 1245, 1401, 1467
StyD4I	CCNGG	5 cut(s)	47, 208, 511, 670, 1543
TaaI	ACNGT	3 cut(s)	865, 905, 952
TaiI	ACGT	2 cut(s)	602, 1149
TaqI	TCGA	3 cut(s)	69, 683, 687
TaqII	GACCGA	1 cut(s)	1533
TasI	AATT	9 cut(s)	259, 405, 675, 768, 815, 1137, 1277, 1337, 1475
TatI	WGTACW	3 cut(s)	190, 952, 995
Tru1I	TTAA	6 cut(s)	80, 159, 302, 813, 1257, 1280
Tru9I	TTAA	6 cut(s)	80, 159, 302, 813, 1257, 1280
TscAI	CASTG	2 cut(s)	127, 441
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	6 cut(s)	197, 329, 571, 1241, 1364, 1367
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	5 cut(s)	17, 249, 644, 683, 1076
TspGWI	ACGGA	1 cut(s)	1543
TspRI	CASTG	2 cut(s)	127, 441
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	1310, 1516
XapI	RAATTY	7 cut(s)	405, 675, 768, 815, 1137, 1337, 1475
XceI	RCATGY	3 cut(s)	217, 959, 1187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 488
XmiI	GTMKAC	1 cut(s)	629
XspI	CTAG	4 cut(s)	533, 1245, 1401, 1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.