Rorug01G0245700

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000322
Physical Location & Seq
Forward (+)
35221700 .. 35224118
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0245700.1

Sequence Viewer

Length: 375 bp
ATGAGTCGAGGAGCTGCAGCAGGCCCCAAGGGGAAGAAGAAGGGAGTGGCTTTTACCATTGATTGTGGTAAGCCAGTAGAAGACAAGATCATGGATATTGCATCCCTCGAGAAGTTTCTCCAGGAGAGGATTAAGGTTGGAGGCAAGGCTGGTGCCCTTGGTGACGCTGTTACTGTGACTCGTGACAAGAGCAAGCTGACCGTCTCCTCTGACAACAACTTCTCTAAGAGATATCTGAAGTACTTGACCAAAAAGTATCTGAAGAAACACAACGTCCGAGACTGGCTTCGTGTTATTTCTTCCAACAAGGACCGAAATGTCTATGAATTGAGGTACTTCAACATAGCTGAGAATGAAGCAGAGGAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

124

Amino Acids

14.0

Weight (kDa)

9.57

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22e PF01776 14 - 123 2.4e-46 Ribosomal L22e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000322)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 152
AcuI CTGAAG 2 cut(s) 257, 281
AfaI GTAC 2 cut(s) 242, 335
AgsI TTSAA 1 cut(s) 340
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 3 cut(s) 14, 196, 347
AluI AGCT 3 cut(s) 14, 196, 347
Alw26I GTCTC 2 cut(s) 208, 273
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 2 cut(s) 14, 17
AspS9I GGNCC 2 cut(s) 23, 310
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 152
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 208, 273
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 15, 18
BlsI GCNGC 2 cut(s) 16, 19
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 23, 310
BmiI GGNNCC 2 cut(s) 25, 154
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 27, 157
Bse1I ACTGG 2 cut(s) 74, 287
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 27, 157
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 74, 287
BseRI GAGGAG 2 cut(s) 24, 196
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 208, 273
BsmBI CGTCTC 1 cut(s) 208
BsnI GGCC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 87
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 25, 154
BspMAI CTGCAG 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 2 cut(s) 74, 287
BssECI CCNNGG 2 cut(s) 27, 157
BssMI GATC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 27, 157
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 175, 202
BstC8I GCNNGC 2 cut(s) 22, 194
BstDEI CTNAG 2 cut(s) 225, 348
BstF5I GGATG 1 cut(s) 101
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 208, 273
BstMBI GATC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 22, 194
Cfr13I GGNCC 2 cut(s) 23, 310
CseI GACGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 241, 334
CviAII CATG 1 cut(s) 91
CviJI RGCY 8 cut(s) 14, 24, 50, 73, 149, 196, 286, 347
CviKI_1 RGCY 8 cut(s) 14, 24, 50, 73, 149, 196, 286, 347
CviQI GTAC 2 cut(s) 241, 334
DdeI CTNAG 2 cut(s) 225, 348
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eco130I CCWWGG 2 cut(s) 27, 157
Eco32I GATATC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 2 cut(s) 257, 281
Eco88I CYCGRG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 120
EcoRV GATATC 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 27, 157
ErhI CCWWGG 2 cut(s) 27, 157
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 92, 324, 344
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 15, 18
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 15, 18
GluI GCNGC 2 cut(s) 15, 18
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 1 cut(s) 24
HgaI GACGC 1 cut(s) 173
Hin1II CATG 1 cut(s) 94
HinfI GANTC 2 cut(s) 4, 178
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 4 cut(s) 211, 237, 261, 278
Hpy188III TCNNGA 2 cut(s) 109, 182
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 175, 202
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 17, 101
HpyF3I CTNAG 2 cut(s) 225, 348
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 6 cut(s) 6, 87, 107, 134, 135, 268
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 110
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 4 cut(s) 161, 169, 175, 182
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 5 cut(s) 46, 49, 92, 274, 291
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 1 cut(s) 326
MlyI GAGTC 2 cut(s) 13, 172
MmeI TCCRAC 2 cut(s) 118, 327
MnlI CCTC 7 cut(s) 116, 120, 134, 217, 324, 355, 358
MseI TTAA 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 25, 154
NmuCI GTSAC 3 cut(s) 161, 175, 182
PaeR7I CTCGAG 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 2 cut(s) 16, 19
PleI GAGTC 2 cut(s) 12, 172
PpsI GAGTC 2 cut(s) 12, 172
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 25, 154
PspPI GGNCC 2 cut(s) 23, 310
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 2 cut(s) 242, 335
RsaNI GTAC 2 cut(s) 241, 334
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 15, 18
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 23, 310
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 2 cut(s) 13, 172
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 157
SetI ASST 6 cut(s) 16, 138, 198, 276, 335, 349
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 1 cut(s) 15
Sfr274I CTCGAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 310
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 27, 157
TaaI ACNGT 2 cut(s) 175, 202
TaiI ACGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 7, 108
TaqII GACCGA 1 cut(s) 327
TasI AATT 1 cut(s) 326
TatI WGTACW 1 cut(s) 240
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 3 cut(s) 161, 175, 182
TseI GCWGC 2 cut(s) 14, 17
Tsp45I GTSAC 3 cut(s) 161, 175, 182
TspDTI ATGAA 2 cut(s) 339, 369
VpaK11BI GGWCC 1 cut(s) 310
XhoI CTCGAG 1 cut(s) 107
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.