Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

8942803 .. 8943687

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0104900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGACTTCATCCATGCCTATTCTCCAAAGAATGGACCGTCTCGATCGTTTGCTGCAGTTTCTGGAAGAGAAGCATTGCTTGTCATCCAAGTGTTCTTTGAGTTCTAGTACTGCTCCCTCCTGCGAAAGCAGTGAACCTGCCCAAGATCGTGTGTCCTACAAAACACTGTCATCTGCAATTGAAGAAGTACATTGTAAAGGCACGCTGATGGAGCGAGTAGCTATGCTTGAGAGCCGGGTTTTACAGTTAAGCCATGAGATGGATTTAGAAAATGCATCAAGTTCTAGCTGTTCCACGATTCTGGTATCTGATCAGAAATTTGAGCAAGACAAGCAAGATTCTCTAATAAATGGGGGGTATAAGTCTCCAAAAGAGTGTGTAAGAAAGCCAAAGCGTTGGAGGAAAGCTGGGAGAAGAAGAACAAGAAAAACAAGCATTGTCTCCATCATTCAGCTGAGAGAATGGCTTAGATGGCCAAGAATGGGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

163

Amino Acids

18.7

Weight (kDa)

9.3

Isoelectric Point (pI)

77.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	2 cut(s)	31, 259
AcoI	YGGCCR	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	2 cut(s)	109, 189
AfiI	CCNNNNNNNGG	3 cut(s)	31, 259, 482
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	4 cut(s)	221, 288, 407, 454
AluI	AGCT	4 cut(s)	221, 288, 407, 454
Alw26I	GTCTC	3 cut(s)	44, 369, 445
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	473
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	4 cut(s)	202, 253, 452, 465
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	3 cut(s)	44, 369, 445
BfaI	CTAG	2 cut(s)	105, 285
BfmI	CTRYAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	284, 476
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 259, 482
Bse3DI	GCAATG	1 cut(s)	73
BseGI	GGATG	3 cut(s)	8, 83, 491
BseLI	CCNNNNNNNGG	3 cut(s)	31, 259, 482
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	407
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	475
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	31, 259, 482
BsmAI	GTCTC	3 cut(s)	44, 369, 445
BsmBI	CGTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	475
Bsp143I	GATC	3 cut(s)	43, 145, 310
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	1 cut(s)	447
BspMAI	CTGCAG	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	73
BssMI	GATC	3 cut(s)	43, 145, 310
Bst4CI	ACNGT	3 cut(s)	38, 168, 246
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	455, 467
BstF5I	GGATG	3 cut(s)	8, 83, 491
BstKTI	GATC	3 cut(s)	46, 148, 313
BstMAI	GTCTC	3 cut(s)	44, 369, 445
BstMBI	GATC	3 cut(s)	43, 145, 310
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 331, 472
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	39
BstXI	CCANNNNNNTGG	2 cut(s)	301, 396
BsuRI	GGCC	1 cut(s)	475
BtsCI	GGATG	3 cut(s)	8, 83, 491
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 164
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	203
CaiI	CAGNNNCTG	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	108, 188
CviAII	CATG	2 cut(s)	13, 254
CviJI	RGCY	9 cut(s)	221, 234, 252, 288, 388, 407, 454, 466, 475
CviKI_1	RGCY	9 cut(s)	221, 234, 252, 288, 388, 407, 454, 466, 475
CviQI	GTAC	2 cut(s)	108, 188
DdeI	CTNAG	2 cut(s)	455, 467
DpnI	GATC	3 cut(s)	45, 147, 312
DpnII	GATC	3 cut(s)	43, 145, 310
EaeI	YGGCCR	1 cut(s)	473
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	2 cut(s)	16, 257
FaiI	YATR	4 cut(s)	14, 224, 255, 360
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	2 cut(s)	12, 253
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	2 cut(s)	105, 285
GluI	GCNGC	1 cut(s)	53
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	2 cut(s)	16, 257
HinfI	GANTC	2 cut(s)	298, 338
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	310, 315
Hpy188III	TCNNGA	2 cut(s)	41, 62
Hpy8I	GTNNAC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	38, 168, 246
HpyCH4V	TGCA	3 cut(s)	55, 176, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 331, 472
HpyF3I	CTNAG	2 cut(s)	455, 467
Hsp92II	CATG	2 cut(s)	16, 257
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	43, 145, 310
LmnI	GCTCC	2 cut(s)	118, 211
LpnPI	CCDG	6 cut(s)	47, 133, 150, 248, 287, 393
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	2 cut(s)	284, 476
MaeI	CTAG	2 cut(s)	105, 285
MalI	GATC	3 cut(s)	45, 147, 312
MboI	GATC	3 cut(s)	43, 145, 310
MboII	GAAGA	4 cut(s)	77, 194, 426, 429
MfeI	CAATTG	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	475
MluCI	AATT	2 cut(s)	177, 317
MluNI	TGGCCA	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	2 cut(s)	127, 393
Mox20I	TGGCCA	1 cut(s)	475
Mph1103I	ATGCAT	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	475
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	2 cut(s)	88, 206
Msp20I	TGGCCA	1 cut(s)	475
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	211, 331, 472
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	3 cut(s)	43, 145, 310
NlaIII	CATG	2 cut(s)	16, 257
NsiI	ATGCAT	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	298, 338
PflMI	CCANNNNNTGG	2 cut(s)	31, 259
PkrI	GCNGC	1 cut(s)	54
Ple19I	CGATCG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	61
PvuI	CGATCG	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	2 cut(s)	109, 189
RsaNI	GTAC	2 cut(s)	108, 188
RseI	CAYNNNNRTG	2 cut(s)	88, 206
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	3 cut(s)	43, 145, 310
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	5 cut(s)	139, 223, 290, 409, 456
SfaNI	GCATC	2 cut(s)	284, 476
SfcI	CTRYAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	88, 206
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	177, 317
SspMI	CTAG	2 cut(s)	105, 285
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	3 cut(s)	38, 168, 246
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	177, 317
TatI	WGTACW	2 cut(s)	107, 187
TfiI	GAWTC	2 cut(s)	298, 338
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	2 cut(s)	136, 171
TseI	GCWGC	1 cut(s)	52
TspRI	CASTG	2 cut(s)	136, 171
Van91I	CCANNNNNTGG	2 cut(s)	31, 259
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	317
XspI	CTAG	2 cut(s)	105, 285
ZrmI	AGTACT	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.