Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 210 |
| AciI | CCGC | 4 cut(s) | 198, 208, 230, 727 |
| AclI | AACGTT | 1 cut(s) | 636 |
| AclWI | GGATC | 5 cut(s) | 183, 196, 283, 807, 890 |
| AcoI | YGGCCR | 1 cut(s) | 205 |
| AcsI | RAATTY | 1 cut(s) | 470 |
| AcuI | CTGAAG | 3 cut(s) | 411, 759, 1011 |
| AdeI | CACNNNGTG | 1 cut(s) | 1024 |
| AfaI | GTAC | 2 cut(s) | 98, 914 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 863 |
| AflIII | ACRYGT | 2 cut(s) | 244, 758 |
| AgsI | TTSAA | 4 cut(s) | 25, 477, 818, 928 |
| AjnI | CCWGG | 3 cut(s) | 218, 291, 769 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 38, 70, 392, 424, 970, 1002 |
| AluBI | AGCT | 9 cut(s) | 17, 278, 286, 666, 691, 743, 821, 998, 1078 |
| AluI | AGCT | 9 cut(s) | 17, 278, 286, 666, 691, 743, 821, 998, 1078 |
| Alw21I | GWGCWC | 3 cut(s) | 244, 498, 880 |
| Alw26I | GTCTC | 1 cut(s) | 1004 |
| Alw44I | GTGCAC | 1 cut(s) | 240 |
| AlwI | GGATC | 5 cut(s) | 183, 196, 283, 807, 890 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 893 |
| AoxI | GGCC | 3 cut(s) | 205, 322, 1051 |
| ApaLI | GTGCAC | 1 cut(s) | 240 |
| ApeKI | GCWGC | 4 cut(s) | 275, 684, 730, 887 |
| ApoI | RAATTY | 1 cut(s) | 470 |
| AspLEI | GCGC | 1 cut(s) | 953 |
| AspS9I | GGNCC | 2 cut(s) | 322, 413 |
| AsuHPI | GGTGA | 1 cut(s) | 355 |
| AvaII | GGWCC | 1 cut(s) | 413 |
| AxyI | CCTNAGG | 1 cut(s) | 900 |
| BaeGI | GKGCMC | 1 cut(s) | 244 |
| BamHI | GGATCC | 1 cut(s) | 188 |
| BanII | GRGCYC | 1 cut(s) | 1117 |
| Bbv12I | GWGCWC | 3 cut(s) | 244, 498, 880 |
| BbvI | GCAGC | 4 cut(s) | 287, 696, 717, 899 |
| BccI | CCATC | 4 cut(s) | 54, 340, 476, 556 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 673, 707 |
| BciT130I | CCWGG | 3 cut(s) | 220, 293, 771 |
| BcoDI | GTCTC | 1 cut(s) | 1004 |
| BfaI | CTAG | 1 cut(s) | 195 |
| BisI | GCNGC | 6 cut(s) | 208, 276, 685, 728, 731, 888 |
| BlsI | GCNGC | 6 cut(s) | 209, 277, 686, 729, 732, 889 |
| BmcAI | AGTACT | 1 cut(s) | 914 |
| Bme1390I | CCNGG | 3 cut(s) | 220, 293, 771 |
| Bme18I | GGWCC | 1 cut(s) | 413 |
| BmgT120I | GGNCC | 2 cut(s) | 322, 413 |
| BmiI | GGNNCC | 4 cut(s) | 190, 414, 519, 906 |
| BmrFI | CCNGG | 3 cut(s) | 220, 293, 771 |
| BmsI | GCATC | 2 cut(s) | 93, 1054 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 862, 894 |
| BpmI | CTGGAG | 1 cut(s) | 504 |
| Bpu10I | CCTNAGC | 1 cut(s) | 279 |
| BpuEI | CTTGAG | 2 cut(s) | 843, 948 |
| BsaBI | GATNNNNATC | 1 cut(s) | 972 |
| BsaJI | CCNNGG | 1 cut(s) | 366 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 863 |
| Bse1I | ACTGG | 1 cut(s) | 190 |
| Bse21I | CCTNAGG | 1 cut(s) | 900 |
| Bse8I | GATNNNNATC | 1 cut(s) | 972 |
| BseBI | CCWGG | 3 cut(s) | 220, 293, 771 |
| BseDI | CCNNGG | 1 cut(s) | 366 |
| BseGI | GGATG | 2 cut(s) | 65, 548 |
| BseJI | GATNNNNATC | 1 cut(s) | 972 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 863 |
| BseMII | CTCAG | 1 cut(s) | 914 |
| BseNI | ACTGG | 1 cut(s) | 190 |
| BseRI | GAGGAG | 1 cut(s) | 886 |
| BseSI | GKGCMC | 1 cut(s) | 244 |
| BseX3I | CGGCCG | 1 cut(s) | 205 |
| BseXI | GCAGC | 4 cut(s) | 287, 696, 717, 899 |
| BseYI | CCCAGC | 1 cut(s) | 440 |
| Bsh1236I | CGCG | 1 cut(s) | 210 |
| Bsh1285I | CGRYCG | 1 cut(s) | 208 |
| BshFI | GGCC | 3 cut(s) | 207, 324, 1053 |
| BsiEI | CGRYCG | 1 cut(s) | 208 |
| BsiHKAI | GWGCWC | 3 cut(s) | 244, 498, 880 |
| BslFI | GGGAC | 1 cut(s) | 426 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 863 |
| BsmAI | GTCTC | 1 cut(s) | 1004 |
| BsmFI | GGGAC | 1 cut(s) | 426 |
| BsmI | GAATGC | 1 cut(s) | 406 |
| BsnI | GGCC | 3 cut(s) | 207, 324, 1053 |
| Bsp1286I | GDGCHC | 4 cut(s) | 244, 498, 880, 1117 |
| Bsp143I | GATC | 6 cut(s) | 166, 188, 288, 355, 799, 895 |
| BspACI | CCGC | 4 cut(s) | 198, 208, 230, 727 |
| BspANI | GGCC | 3 cut(s) | 207, 324, 1053 |
| BspCNI | CTCAG | 1 cut(s) | 913 |
| BspFNI | CGCG | 1 cut(s) | 210 |
| BspLI | GGNNCC | 4 cut(s) | 190, 414, 519, 906 |
| BspPI | GGATC | 5 cut(s) | 183, 196, 283, 807, 890 |
| BspQI | GCTCTTC | 1 cut(s) | 486 |
| BsrI | ACTGG | 1 cut(s) | 190 |
| BssECI | CCNNGG | 1 cut(s) | 366 |
| BssMI | GATC | 6 cut(s) | 166, 188, 288, 355, 799, 895 |
| BssT1I | CCWWGG | 1 cut(s) | 366 |
| Bst2UI | CCWGG | 3 cut(s) | 220, 293, 771 |
| Bst4CI | ACNGT | 1 cut(s) | 917 |
| Bst6I | CTCTTC | 1 cut(s) | 486 |
| BstC8I | GCNNGC | 5 cut(s) | 127, 689, 693, 735, 1102 |
| BstDEI | CTNAG | 3 cut(s) | 279, 667, 900 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 861 |
| BstF5I | GGATG | 2 cut(s) | 65, 548 |
| BstFNI | CGCG | 1 cut(s) | 210 |
| BstHHI | GCGC | 1 cut(s) | 953 |
| BstKTI | GATC | 6 cut(s) | 169, 191, 291, 358, 802, 898 |
| BstMAI | GTCTC | 1 cut(s) | 1004 |
| BstMBI | GATC | 6 cut(s) | 166, 188, 288, 355, 799, 895 |
| BstMCI | CGRYCG | 1 cut(s) | 208 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 204, 401, 884 |
| BstNI | CCWGG | 3 cut(s) | 220, 293, 771 |
| BstNSI | RCATGY | 5 cut(s) | 177, 248, 425, 762, 1104 |
| BstSCI | CCNGG | 3 cut(s) | 218, 291, 769 |
| BstSLI | GKGCMC | 1 cut(s) | 244 |
| BstUI | CGCG | 1 cut(s) | 210 |
| BstV1I | GCAGC | 4 cut(s) | 287, 696, 717, 899 |
| BstX2I | RGATCY | 2 cut(s) | 188, 799 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 226 |
| BstYI | RGATCY | 2 cut(s) | 188, 799 |
| BstZI | CGGCCG | 1 cut(s) | 205 |
| Bsu36I | CCTNAGG | 1 cut(s) | 900 |
| BsuRI | GGCC | 3 cut(s) | 207, 324, 1053 |
| BtsCI | GGATG | 2 cut(s) | 65, 548 |
| BtsI | GCAGTG | 3 cut(s) | 120, 264, 524 |
| BtsIMutI | CAGTG | 5 cut(s) | 120, 183, 264, 524, 891 |
| Cac8I | GCNNGC | 5 cut(s) | 127, 689, 693, 735, 1102 |
| CaiI | CAGNNNCTG | 1 cut(s) | 893 |
| CfoI | GCGC | 1 cut(s) | 953 |
| Cfr13I | GGNCC | 2 cut(s) | 322, 413 |
| Csp6I | GTAC | 2 cut(s) | 97, 913 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 651, 686 |
| CviAII | CATG | 6 cut(s) | 174, 245, 422, 631, 759, 1101 |
| CviQI | GTAC | 2 cut(s) | 97, 913 |
| DdeI | CTNAG | 3 cut(s) | 279, 667, 900 |
| DpnI | GATC | 6 cut(s) | 168, 190, 290, 357, 801, 897 |
| DpnII | GATC | 6 cut(s) | 166, 188, 288, 355, 799, 895 |
| DraIII | CACNNNGTG | 1 cut(s) | 1024 |
| EaeI | YGGCCR | 1 cut(s) | 205 |
| EagI | CGGCCG | 1 cut(s) | 205 |
| Eam1104I | CTCTTC | 1 cut(s) | 486 |
| EarI | CTCTTC | 1 cut(s) | 486 |
| EciI | GGCGGA | 1 cut(s) | 245 |
| EclXI | CGGCCG | 1 cut(s) | 205 |
| Eco130I | CCWWGG | 1 cut(s) | 366 |
| Eco24I | GRGCYC | 1 cut(s) | 1117 |
| Eco47I | GGWCC | 1 cut(s) | 413 |
| Eco52I | CGGCCG | 1 cut(s) | 205 |
| Eco57I | CTGAAG | 3 cut(s) | 411, 759, 1011 |
| Eco81I | CCTNAGG | 1 cut(s) | 900 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 861 |
| EcoO109I | RGGNCCY | 1 cut(s) | 413 |
| EcoRII | CCWGG | 3 cut(s) | 218, 291, 769 |
| EcoT14I | CCWWGG | 1 cut(s) | 366 |
| EcoT22I | ATGCAT | 2 cut(s) | 179, 603 |
| EcoT38I | GRGCYC | 1 cut(s) | 1117 |
| ErhI | CCWWGG | 1 cut(s) | 366 |
| FaeI | CATG | 6 cut(s) | 177, 248, 425, 634, 762, 1104 |
| FaqI | GGGAC | 1 cut(s) | 426 |
| FatI | CATG | 6 cut(s) | 173, 244, 421, 630, 758, 1100 |
| Fnu4HI | GCNGC | 6 cut(s) | 208, 276, 685, 728, 731, 888 |
| FokI | GGATG | 2 cut(s) | 72, 535 |
| FriOI | GRGCYC | 1 cut(s) | 1117 |
| Fsp4HI | GCNGC | 6 cut(s) | 208, 276, 685, 728, 731, 888 |
| FspBI | CTAG | 1 cut(s) | 195 |
| GlaI | GCGC | 1 cut(s) | 952 |
| GluI | GCNGC | 6 cut(s) | 208, 276, 685, 728, 731, 888 |
| GsaI | CCCAGC | 1 cut(s) | 444 |
| GsuI | CTGGAG | 1 cut(s) | 504 |
| HaeIII | GGCC | 3 cut(s) | 207, 324, 1053 |
| HhaI | GCGC | 1 cut(s) | 953 |
| Hin1II | CATG | 6 cut(s) | 177, 248, 425, 634, 762, 1104 |
| Hin6I | GCGC | 1 cut(s) | 951 |
| HinP1I | GCGC | 1 cut(s) | 951 |
| HincII | GTYRAC | 2 cut(s) | 163, 619 |
| HindII | GTYRAC | 2 cut(s) | 163, 619 |
| HindIII | AAGCTT | 2 cut(s) | 664, 1076 |
| HinfI | GANTC | 5 cut(s) | 117, 233, 371, 508, 810 |
| HphI | GGTGA | 1 cut(s) | 355 |
| Hpy166II | GTNNAC | 4 cut(s) | 97, 163, 242, 619 |
| Hpy188I | TCNGA | 4 cut(s) | 391, 934, 991, 1063 |
| Hpy188III | TCNNGA | 6 cut(s) | 112, 315, 781, 860, 908, 965 |
| Hpy8I | GTNNAC | 4 cut(s) | 97, 163, 242, 619 |
| HpyAV | CCTTC | 7 cut(s) | 40, 335, 857, 996, 1064, 1068, 1079 |
| HpyCH4III | ACNGT | 1 cut(s) | 917 |
| HpyCH4IV | ACGT | 1 cut(s) | 636 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 204, 401, 884 |
| HpyF3I | CTNAG | 3 cut(s) | 279, 667, 900 |
| HpySE526I | ACGT | 1 cut(s) | 636 |
| Hsp92II | CATG | 6 cut(s) | 177, 248, 425, 634, 762, 1104 |
| HspAI | GCGC | 1 cut(s) | 951 |
| Kzo9I | GATC | 6 cut(s) | 166, 188, 288, 355, 799, 895 |
| LguI | GCTCTTC | 1 cut(s) | 486 |
| LmnI | GCTCC | 2 cut(s) | 283, 523 |
| Lsp1109I | GCAGC | 4 cut(s) | 287, 696, 717, 899 |
| LweI | GCATC | 2 cut(s) | 93, 1054 |
| MaeI | CTAG | 1 cut(s) | 195 |
| MaeII | ACGT | 1 cut(s) | 636 |
| MaeIII | GTNAC | 2 cut(s) | 181, 754 |
| MalI | GATC | 6 cut(s) | 168, 190, 290, 357, 801, 897 |
| MboI | GATC | 6 cut(s) | 166, 188, 288, 355, 799, 895 |
| MboII | GAAGA | 7 cut(s) | 49, 52, 55, 503, 794, 1004, 1103 |
| MfeI | CAATTG | 1 cut(s) | 920 |
| MflI | RGATCY | 2 cut(s) | 188, 799 |
| MhlI | GDGCHC | 4 cut(s) | 244, 498, 880, 1117 |
| MluCI | AATT | 4 cut(s) | 470, 576, 589, 920 |
| MlyI | GAGTC | 1 cut(s) | 242 |
| MmeI | TCCRAC | 1 cut(s) | 1001 |
| Mph1103I | ATGCAT | 2 cut(s) | 179, 603 |
| MseI | TTAA | 1 cut(s) | 582 |
| MspA1I | CMGCKG | 1 cut(s) | 17 |
| MspR9I | CCNGG | 3 cut(s) | 220, 293, 771 |
| MunI | CAATTG | 1 cut(s) | 920 |
| Mva1269I | GAATGC | 1 cut(s) | 406 |
| MvaI | CCWGG | 3 cut(s) | 220, 293, 771 |
| MvnI | CGCG | 1 cut(s) | 210 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 204, 401, 884 |
| NdeII | GATC | 6 cut(s) | 166, 188, 288, 355, 799, 895 |
| NlaIII | CATG | 6 cut(s) | 177, 248, 425, 634, 762, 1104 |
| NlaIV | GGNNCC | 4 cut(s) | 190, 414, 519, 906 |
| NmuCI | GTSAC | 1 cut(s) | 181 |
| NsiI | ATGCAT | 2 cut(s) | 179, 603 |
| NspI | RCATGY | 5 cut(s) | 177, 248, 425, 762, 1104 |
| PaeI | GCATGC | 1 cut(s) | 1104 |
| PciI | ACATGT | 2 cut(s) | 244, 758 |
| PciSI | GCTCTTC | 1 cut(s) | 486 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 633 |
| PctI | GAATGC | 1 cut(s) | 406 |
| PfeI | GAWTC | 4 cut(s) | 117, 371, 508, 810 |
| PfoI | TCCNGGA | 1 cut(s) | 291 |
| PkrI | GCNGC | 6 cut(s) | 209, 277, 686, 729, 732, 889 |
| PleI | GAGTC | 1 cut(s) | 241 |
| PpsI | GAGTC | 1 cut(s) | 241 |
| PpuMI | RGGWCCY | 1 cut(s) | 413 |
| PscI | ACATGT | 2 cut(s) | 244, 758 |
| Psp1406I | AACGTT | 1 cut(s) | 636 |
| Psp5II | RGGWCCY | 1 cut(s) | 413 |
| Psp6I | CCWGG | 3 cut(s) | 218, 291, 769 |
| PspFI | CCCAGC | 1 cut(s) | 440 |
| PspGI | CCWGG | 3 cut(s) | 218, 291, 769 |
| PspN4I | GGNNCC | 4 cut(s) | 190, 414, 519, 906 |
| PspPI | GGNCC | 2 cut(s) | 322, 413 |
| PspPPI | RGGWCCY | 1 cut(s) | 413 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 342, 374 |
| PstNI | CAGNNNCTG | 1 cut(s) | 893 |
| PsuI | RGATCY | 2 cut(s) | 188, 799 |
| PvuII | CAGCTG | 1 cut(s) | 17 |
| RsaI | GTAC | 2 cut(s) | 98, 914 |
| RsaNI | GTAC | 2 cut(s) | 97, 913 |
| SapI | GCTCTTC | 1 cut(s) | 486 |
| SaqAI | TTAA | 1 cut(s) | 582 |
| SatI | GCNGC | 6 cut(s) | 208, 276, 685, 728, 731, 888 |
| Sau3AI | GATC | 6 cut(s) | 166, 188, 288, 355, 799, 895 |
| Sau96I | GGNCC | 2 cut(s) | 322, 413 |
| ScaI | AGTACT | 1 cut(s) | 914 |
| SchI | GAGTC | 1 cut(s) | 242 |
| ScrFI | CCNGG | 3 cut(s) | 220, 293, 771 |
| SduI | GDGCHC | 4 cut(s) | 244, 498, 880, 1117 |
| SfaNI | GCATC | 2 cut(s) | 93, 1054 |
| SinI | GGWCC | 1 cut(s) | 413 |
| SmlI | CTYRAG | 2 cut(s) | 858, 963 |
| SmoI | CTYRAG | 2 cut(s) | 858, 963 |
| SphI | GCATGC | 1 cut(s) | 1104 |
| Sse9I | AATT | 4 cut(s) | 470, 576, 589, 920 |
| SsiI | CCGC | 4 cut(s) | 198, 208, 230, 727 |
| SspI | AATATT | 1 cut(s) | 337 |
| SspMI | CTAG | 1 cut(s) | 195 |
| StyD4I | CCNGG | 3 cut(s) | 218, 291, 769 |
| StyI | CCWWGG | 1 cut(s) | 366 |
| TaaI | ACNGT | 1 cut(s) | 917 |
| TaiI | ACGT | 1 cut(s) | 639 |
| TaqI | TCGA | 3 cut(s) | 574, 680, 869 |
| TasI | AATT | 4 cut(s) | 470, 576, 589, 920 |
| TatI | WGTACW | 1 cut(s) | 912 |
| TauI | GCSGC | 2 cut(s) | 210, 730 |
| TfiI | GAWTC | 4 cut(s) | 117, 371, 508, 810 |
| Tru1I | TTAA | 1 cut(s) | 582 |
| Tru9I | TTAA | 1 cut(s) | 582 |
| TscAI | CASTG | 5 cut(s) | 127, 190, 264, 531, 898 |
| TseFI | GTSAC | 1 cut(s) | 181 |
| TseI | GCWGC | 4 cut(s) | 275, 684, 730, 887 |
| Tsp45I | GTSAC | 1 cut(s) | 181 |
| TspDTI | ATGAA | 4 cut(s) | 321, 504, 647, 946 |
| TspGWI | ACGGA | 2 cut(s) | 66, 583 |
| TspRI | CASTG | 5 cut(s) | 127, 190, 264, 531, 898 |
| VneI | GTGCAC | 1 cut(s) | 240 |
| VpaK11BI | GGWCC | 1 cut(s) | 413 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 861 |
| XapI | RAATTY | 1 cut(s) | 470 |
| XceI | RCATGY | 5 cut(s) | 177, 248, 425, 762, 1104 |
| XspI | CTAG | 1 cut(s) | 195 |
| ZrmI | AGTACT | 1 cut(s) | 914 |
| Zsp2I | ATGCAT | 2 cut(s) | 179, 603 |