SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NAM | PF02365 | 14 - 139 | 3.3e-46 | No apical meristem (NAM) protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1392 |
| AccBSI | CCGCTC | 1 cut(s) | 766 |
| AccIII | TCCGGA | 1 cut(s) | 205 |
| AciI | CCGC | 4 cut(s) | 764, 1160, 1545, 1548 |
| AclWI | GGATC | 5 cut(s) | 197, 210, 765, 1048, 1436 |
| AcoI | YGGCCR | 2 cut(s) | 451, 1627 |
| AcsI | RAATTY | 2 cut(s) | 507, 930 |
| AdeI | CACNNNGTG | 1 cut(s) | 1307 |
| AfaI | GTAC | 7 cut(s) | 242, 284, 413, 658, 1077, 1082, 1331 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1107, 1232 |
| AgeI | ACCGGT | 1 cut(s) | 296 |
| AgsI | TTSAA | 8 cut(s) | 262, 513, 572, 958, 1097, 1209, 1346, 1612 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 580 |
| AjnI | CCWGG | 6 cut(s) | 164, 351, 448, 745, 856, 1503 |
| AluBI | AGCT | 7 cut(s) | 76, 433, 536, 637, 726, 1093, 1457 |
| AluI | AGCT | 7 cut(s) | 76, 433, 536, 637, 726, 1093, 1457 |
| Alw21I | GWGCWC | 2 cut(s) | 376, 950 |
| Alw26I | GTCTC | 6 cut(s) | 30, 1001, 1027, 1279, 1380, 1502 |
| AlwI | GGATC | 5 cut(s) | 197, 210, 765, 1048, 1436 |
| Ama87I | CYCGRG | 1 cut(s) | 767 |
| Aor13HI | TCCGGA | 1 cut(s) | 205 |
| AoxI | GGCC | 6 cut(s) | 59, 291, 451, 1135, 1614, 1627 |
| ApaI | GGGCCC | 1 cut(s) | 1139 |
| ApeKI | GCWGC | 2 cut(s) | 424, 726 |
| ApoI | RAATTY | 2 cut(s) | 507, 930 |
| AseI | ATTAAT | 1 cut(s) | 1325 |
| AsiGI | ACCGGT | 1 cut(s) | 296 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 636, 1092 |
| AspS9I | GGNCC | 3 cut(s) | 743, 1135, 1136 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 600, 1319 |
| AsuII | TTCGAA | 1 cut(s) | 981 |
| AsuNHI | GCTAGC | 1 cut(s) | 1697 |
| AvaI | CYCGRG | 1 cut(s) | 767 |
| AvaII | GGWCC | 1 cut(s) | 743 |
| AxyI | CCTNAGG | 1 cut(s) | 798 |
| BaeGI | GKGCMC | 2 cut(s) | 716, 1139 |
| BalI | TGGCCA | 2 cut(s) | 453, 1629 |
| BamHI | GGATCC | 1 cut(s) | 202 |
| BanII | GRGCYC | 2 cut(s) | 165, 1139 |
| BauI | CACGAG | 1 cut(s) | 407 |
| BbsI | GAAGAC | 3 cut(s) | 349, 579, 1407 |
| Bbv12I | GWGCWC | 2 cut(s) | 376, 950 |
| BbvI | GCAGC | 2 cut(s) | 436, 713 |
| BccI | CCATC | 6 cut(s) | 431, 613, 619, 671, 676, 734 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 398, 432 |
| BciT130I | CCWGG | 6 cut(s) | 166, 353, 450, 747, 858, 1505 |
| BciVI | GTATCC | 1 cut(s) | 550 |
| BclI | TGATCA | 1 cut(s) | 916 |
| BcoDI | GTCTC | 6 cut(s) | 30, 1001, 1027, 1279, 1380, 1502 |
| BfaI | CTAG | 6 cut(s) | 549, 645, 717, 1275, 1458, 1698 |
| BfuAI | ACCTGC | 1 cut(s) | 1392 |
| BfuI | GTATCC | 1 cut(s) | 550 |
| BisI | GCNGC | 4 cut(s) | 425, 727, 764, 1548 |
| BlsI | GCNGC | 4 cut(s) | 426, 728, 765, 1549 |
| BmcAI | AGTACT | 1 cut(s) | 1077 |
| Bme1390I | CCNGG | 6 cut(s) | 166, 353, 450, 747, 858, 1505 |
| Bme18I | GGWCC | 1 cut(s) | 743 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 580 |
| BmeT110I | CYCGRG | 1 cut(s) | 767 |
| BmgT120I | GGNCC | 3 cut(s) | 743, 1135, 1136 |
| BmiI | GGNNCC | 6 cut(s) | 162, 204, 600, 1137, 1138, 1596 |
| BmrFI | CCNGG | 6 cut(s) | 166, 353, 450, 747, 858, 1505 |
| BmrI | ACTGGG | 2 cut(s) | 375, 1221 |
| BmsI | GCATC | 4 cut(s) | 695, 913, 1042, 1468 |
| BmtI | GCTAGC | 1 cut(s) | 1701 |
| BmuI | ACTGGG | 2 cut(s) | 375, 1221 |
| BoxI | GACNNNNGTC | 1 cut(s) | 353 |
| BpiI | GAAGAC | 3 cut(s) | 349, 579, 1407 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 959, 991 |
| BpmI | CTGGAG | 2 cut(s) | 342, 1526 |
| Bpu10I | CCTNAGC | 1 cut(s) | 944 |
| Bpu14I | TTCGAA | 1 cut(s) | 981 |
| BpuEI | CTTGAG | 3 cut(s) | 573, 1165, 1362 |
| BsaBI | GATNNNNATC | 1 cut(s) | 87 |
| BsaI | GGTCTC | 1 cut(s) | 1001 |
| BsaJI | CCNNGG | 6 cut(s) | 164, 165, 351, 378, 856, 1503 |
| BsaWI | WCCGGW | 2 cut(s) | 205, 296 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1107, 1232 |
| Bse118I | RCCGGY | 1 cut(s) | 296 |
| Bse1I | ACTGG | 7 cut(s) | 290, 370, 600, 759, 1227, 1243, 1527 |
| Bse21I | CCTNAGG | 1 cut(s) | 798 |
| Bse3DI | GCAATG | 3 cut(s) | 736, 919, 1054 |
| Bse8I | GATNNNNATC | 1 cut(s) | 87 |
| BseAI | TCCGGA | 1 cut(s) | 205 |
| BseBI | CCWGG | 6 cut(s) | 166, 353, 450, 747, 858, 1505 |
| BseDI | CCNNGG | 6 cut(s) | 164, 165, 351, 378, 856, 1503 |
| BseGI | GGATG | 4 cut(s) | 73, 445, 687, 1501 |
| BseJI | GATNNNNATC | 1 cut(s) | 87 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1107, 1232 |
| BseMI | GCAATG | 3 cut(s) | 736, 919, 1054 |
| BseMII | CTCAG | 6 cut(s) | 83, 789, 927, 935, 1010, 1234 |
| BseNI | ACTGG | 7 cut(s) | 290, 370, 600, 759, 1227, 1243, 1527 |
| BseRI | GAGGAG | 3 cut(s) | 86, 555, 1445 |
| BseSI | GKGCMC | 2 cut(s) | 716, 1139 |
| BseXI | GCAGC | 2 cut(s) | 436, 713 |
| BsgI | GTGCAG | 2 cut(s) | 297, 1384 |
| BshFI | GGCC | 6 cut(s) | 61, 293, 453, 1137, 1616, 1629 |
| BshTI | ACCGGT | 1 cut(s) | 296 |
| BsiHKAI | GWGCWC | 2 cut(s) | 376, 950 |
| BsiHKCI | CYCGRG | 1 cut(s) | 767 |
| BsiSI | CCGG | 2 cut(s) | 206, 297 |
| BslFI | GGGAC | 1 cut(s) | 1209 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1107, 1232 |
| BsmAI | GTCTC | 6 cut(s) | 30, 1001, 1027, 1279, 1380, 1502 |
| BsmFI | GGGAC | 1 cut(s) | 1209 |
| BsnI | GGCC | 6 cut(s) | 61, 293, 453, 1137, 1616, 1629 |
| Bso31I | GGTCTC | 1 cut(s) | 1001 |
| BsoBI | CYCGRG | 1 cut(s) | 767 |
| Bsp119I | TTCGAA | 1 cut(s) | 981 |
| Bsp120I | GGGCCC | 1 cut(s) | 1135 |
| Bsp1286I | GDGCHC | 5 cut(s) | 165, 376, 716, 950, 1139 |
| Bsp13I | TCCGGA | 1 cut(s) | 205 |
| Bsp1407I | TGTACA | 1 cut(s) | 1080 |
| Bsp143I | GATC | 7 cut(s) | 95, 202, 304, 757, 916, 1040, 1441 |
| BspACI | CCGC | 4 cut(s) | 764, 1160, 1545, 1548 |
| BspANI | GGCC | 6 cut(s) | 61, 293, 453, 1137, 1616, 1629 |
| BspCNI | CTCAG | 6 cut(s) | 84, 790, 928, 936, 1009, 1233 |
| BspEI | TCCGGA | 1 cut(s) | 205 |
| BspLI | GGNNCC | 6 cut(s) | 162, 204, 600, 1137, 1138, 1596 |
| BspMI | ACCTGC | 1 cut(s) | 1392 |
| BspOI | GCTAGC | 1 cut(s) | 1701 |
| BspPI | GGATC | 5 cut(s) | 197, 210, 765, 1048, 1436 |
| BspQI | GCTCTTC | 2 cut(s) | 798, 1083 |
| BspT104I | TTCGAA | 1 cut(s) | 981 |
| BspTNI | GGTCTC | 1 cut(s) | 1001 |
| BsrBI | CCGCTC | 1 cut(s) | 766 |
| BsrDI | GCAATG | 3 cut(s) | 736, 919, 1054 |
| BsrFI | RCCGGY | 1 cut(s) | 296 |
| BsrGI | TGTACA | 1 cut(s) | 1080 |
| BsrI | ACTGG | 7 cut(s) | 290, 370, 600, 759, 1227, 1243, 1527 |
| BssAI | RCCGGY | 1 cut(s) | 296 |
| BssECI | CCNNGG | 6 cut(s) | 164, 165, 351, 378, 856, 1503 |
| BssMI | GATC | 7 cut(s) | 95, 202, 304, 757, 916, 1040, 1441 |
| BssSI | CACGAG | 1 cut(s) | 407 |
| BssT1I | CCWWGG | 1 cut(s) | 378 |
| Bst2BI | CACGAG | 1 cut(s) | 407 |
| Bst2UI | CCWGG | 6 cut(s) | 166, 353, 450, 747, 858, 1505 |
| Bst4CI | ACNGT | 5 cut(s) | 416, 518, 962, 1080, 1282 |
| Bst6I | CTCTTC | 2 cut(s) | 798, 1083 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 726 |
| BstAUI | TGTACA | 1 cut(s) | 1080 |
| BstBI | TTCGAA | 1 cut(s) | 981 |
| BstC8I | GCNNGC | 3 cut(s) | 372, 1627, 1699 |
| BstDEI | CTNAG | 6 cut(s) | 92, 798, 936, 944, 996, 1220 |
| BstF5I | GGATG | 4 cut(s) | 73, 445, 687, 1501 |
| BstKTI | GATC | 7 cut(s) | 98, 205, 307, 760, 919, 1043, 1444 |
| BstMAI | GTCTC | 6 cut(s) | 30, 1001, 1027, 1279, 1380, 1502 |
| BstMBI | GATC | 7 cut(s) | 95, 202, 304, 757, 916, 1040, 1441 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 275, 430, 726, 1478, 1487, 1622 |
| BstNI | CCWGG | 6 cut(s) | 166, 353, 450, 747, 858, 1505 |
| BstNSI | RCATGY | 1 cut(s) | 1705 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 353 |
| BstSCI | CCNGG | 6 cut(s) | 164, 351, 448, 745, 856, 1503 |
| BstSLI | GKGCMC | 2 cut(s) | 716, 1139 |
| BstV1I | GCAGC | 2 cut(s) | 436, 713 |
| BstV2I | GAAGAC | 3 cut(s) | 349, 579, 1407 |
| BstX2I | RGATCY | 3 cut(s) | 202, 757, 1441 |
| BstYI | RGATCY | 3 cut(s) | 202, 757, 1441 |
| Bsu36I | CCTNAGG | 1 cut(s) | 798 |
| BsuI | GTATCC | 1 cut(s) | 550 |
| BsuRI | GGCC | 6 cut(s) | 61, 293, 453, 1137, 1616, 1629 |
| BtsCI | GGATG | 4 cut(s) | 73, 445, 687, 1501 |
| BtsIMutI | CAGTG | 6 cut(s) | 192, 593, 1234, 1236, 1278, 1367 |
| BveI | ACCTGC | 1 cut(s) | 1392 |
| Cac8I | GCNNGC | 3 cut(s) | 372, 1627, 1699 |
| Cfr10I | RCCGGY | 1 cut(s) | 296 |
| Cfr13I | GGNCC | 3 cut(s) | 743, 1135, 1136 |
| CseI | GACGC | 1 cut(s) | 1067 |
| CsiI | ACCWGGT | 1 cut(s) | 745 |
| Csp6I | GTAC | 7 cut(s) | 241, 283, 412, 657, 1076, 1081, 1330 |
| CspAI | ACCGGT | 1 cut(s) | 296 |
| CviAII | CATG | 6 cut(s) | 615, 1044, 1084, 1141, 1406, 1702 |
| CviQI | GTAC | 7 cut(s) | 241, 283, 412, 657, 1076, 1081, 1330 |
| DdeI | CTNAG | 6 cut(s) | 92, 798, 936, 944, 996, 1220 |
| DpnI | GATC | 7 cut(s) | 97, 204, 306, 759, 918, 1042, 1443 |
| DpnII | GATC | 7 cut(s) | 95, 202, 304, 757, 916, 1040, 1441 |
| DraI | TTTAAA | 1 cut(s) | 484 |
| DraIII | CACNNNGTG | 1 cut(s) | 1307 |
| DriI | GACNNNNNGTC | 1 cut(s) | 580 |
| EaeI | YGGCCR | 2 cut(s) | 451, 1627 |
| Eam1104I | CTCTTC | 2 cut(s) | 798, 1083 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 580 |
| EarI | CTCTTC | 2 cut(s) | 798, 1083 |
| EciI | GGCGGA | 1 cut(s) | 1534 |
| Eco130I | CCWWGG | 1 cut(s) | 378 |
| Eco24I | GRGCYC | 2 cut(s) | 165, 1139 |
| Eco31I | GGTCTC | 1 cut(s) | 1001 |
| Eco47I | GGWCC | 1 cut(s) | 743 |
| Eco81I | CCTNAGG | 1 cut(s) | 798 |
| Eco88I | CYCGRG | 1 cut(s) | 767 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1135, 1136 |
| EcoRII | CCWGG | 6 cut(s) | 164, 351, 448, 745, 856, 1503 |
| EcoT14I | CCWWGG | 1 cut(s) | 378 |
| EcoT38I | GRGCYC | 2 cut(s) | 165, 1139 |
| ErhI | CCWWGG | 1 cut(s) | 378 |
| FaeI | CATG | 6 cut(s) | 618, 1047, 1087, 1144, 1409, 1705 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 795, 827 |
| FaqI | GGGAC | 1 cut(s) | 1209 |
| FatI | CATG | 6 cut(s) | 614, 1043, 1083, 1140, 1405, 1701 |
| FauNDI | CATATG | 1 cut(s) | 834 |
| FbaI | TGATCA | 1 cut(s) | 916 |
| Fnu4HI | GCNGC | 4 cut(s) | 425, 727, 764, 1548 |
| FokI | GGATG | 4 cut(s) | 80, 432, 694, 1508 |
| FriOI | GRGCYC | 2 cut(s) | 165, 1139 |
| Fsp4HI | GCNGC | 4 cut(s) | 425, 727, 764, 1548 |
| FspBI | CTAG | 6 cut(s) | 549, 645, 717, 1275, 1458, 1698 |
| GluI | GCNGC | 4 cut(s) | 425, 727, 764, 1548 |
| GsuI | CTGGAG | 2 cut(s) | 342, 1526 |
| HaeIII | GGCC | 6 cut(s) | 61, 293, 453, 1137, 1616, 1629 |
| HapII | CCGG | 2 cut(s) | 206, 297 |
| HgaI | GACGC | 1 cut(s) | 1067 |
| Hin1II | CATG | 6 cut(s) | 618, 1047, 1087, 1144, 1409, 1705 |
| HincII | GTYRAC | 1 cut(s) | 752 |
| HindII | GTYRAC | 1 cut(s) | 752 |
| HindIII | AAGCTT | 1 cut(s) | 635 |
| HinfI | GANTC | 7 cut(s) | 48, 54, 312, 457, 1255, 1433, 1523 |
| HpaII | CCGG | 2 cut(s) | 206, 297 |
| HphI | GGTGA | 3 cut(s) | 16, 600, 1319 |
| Hpy166II | GTNNAC | 2 cut(s) | 227, 752 |
| Hpy188I | TCNGA | 6 cut(s) | 53, 93, 691, 937, 967, 999 |
| Hpy8I | GTNNAC | 2 cut(s) | 227, 752 |
| HpyAV | CCTTC | 4 cut(s) | 283, 988, 1606, 1608 |
| HpyCH4III | ACNGT | 5 cut(s) | 416, 518, 962, 1080, 1282 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 275, 430, 726, 1478, 1487, 1622 |
| HpyF3I | CTNAG | 6 cut(s) | 92, 798, 936, 944, 996, 1220 |
| Hsp92II | CATG | 6 cut(s) | 618, 1047, 1087, 1144, 1409, 1705 |
| Kpn2I | TCCGGA | 1 cut(s) | 205 |
| Ksp22I | TGATCA | 1 cut(s) | 916 |
| Kzo9I | GATC | 7 cut(s) | 95, 202, 304, 757, 916, 1040, 1441 |
| LguI | GCTCTTC | 2 cut(s) | 798, 1083 |
| LmnI | GCTCC | 7 cut(s) | 73, 160, 323, 379, 430, 844, 1572 |
| Lsp1109I | GCAGC | 2 cut(s) | 436, 713 |
| LweI | GCATC | 4 cut(s) | 695, 913, 1042, 1468 |
| MabI | ACCWGGT | 1 cut(s) | 745 |
| MaeI | CTAG | 6 cut(s) | 549, 645, 717, 1275, 1458, 1698 |
| MaeIII | GTNAC | 2 cut(s) | 851, 1529 |
| MalI | GATC | 7 cut(s) | 97, 204, 306, 759, 918, 1042, 1443 |
| MbiI | CCGCTC | 1 cut(s) | 766 |
| MboI | GATC | 7 cut(s) | 95, 202, 304, 757, 916, 1040, 1441 |
| MboII | GAAGA | 9 cut(s) | 208, 211, 349, 584, 815, 995, 1100, 1332, 1412 |
| MflI | RGATCY | 3 cut(s) | 202, 757, 1441 |
| MhlI | GDGCHC | 5 cut(s) | 165, 376, 716, 950, 1139 |
| MlsI | TGGCCA | 2 cut(s) | 453, 1629 |
| MluNI | TGGCCA | 2 cut(s) | 453, 1629 |
| MlyI | GAGTC | 4 cut(s) | 466, 1249, 1442, 1532 |
| MmeI | TCCRAC | 3 cut(s) | 316, 1092, 1295 |
| Mox20I | TGGCCA | 2 cut(s) | 453, 1629 |
| MroI | TCCGGA | 1 cut(s) | 205 |
| MroXI | GAANNNNTTC | 2 cut(s) | 636, 1092 |
| MscI | TGGCCA | 2 cut(s) | 453, 1629 |
| MseI | TTAA | 5 cut(s) | 483, 779, 872, 1029, 1325 |
| MslI | CAYNNNNRTG | 3 cut(s) | 613, 1209, 1565 |
| Msp20I | TGGCCA | 2 cut(s) | 453, 1629 |
| MspA1I | CMGCKG | 2 cut(s) | 536, 726 |
| MspI | CCGG | 2 cut(s) | 206, 297 |
| MspR9I | CCNGG | 6 cut(s) | 166, 353, 450, 747, 858, 1505 |
| MvaI | CCWGG | 6 cut(s) | 166, 353, 450, 747, 858, 1505 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 275, 430, 726, 1478, 1487, 1622 |
| NdeI | CATATG | 1 cut(s) | 834 |
| NdeII | GATC | 7 cut(s) | 95, 202, 304, 757, 916, 1040, 1441 |
| NheI | GCTAGC | 1 cut(s) | 1697 |
| NlaIII | CATG | 6 cut(s) | 618, 1047, 1087, 1144, 1409, 1705 |
| NlaIV | GGNNCC | 6 cut(s) | 162, 204, 600, 1137, 1138, 1596 |
| NspI | RCATGY | 1 cut(s) | 1705 |
| NspV | TTCGAA | 1 cut(s) | 981 |
| PaeR7I | CTCGAG | 1 cut(s) | 767 |
| PasI | CCCWGGG | 1 cut(s) | 165 |
| PciSI | GCTCTTC | 2 cut(s) | 798, 1083 |
| PdmI | GAANNNNTTC | 2 cut(s) | 636, 1092 |
| PfeI | GAWTC | 3 cut(s) | 48, 54, 312 |
| PflFI | GACNNNGTC | 1 cut(s) | 747 |
| PinAI | ACCGGT | 1 cut(s) | 296 |
| PkrI | GCNGC | 4 cut(s) | 426, 728, 765, 1549 |
| PleI | GAGTC | 4 cut(s) | 465, 1249, 1441, 1531 |
| PpsI | GAGTC | 4 cut(s) | 465, 1249, 1441, 1531 |
| PshAI | GACNNNNGTC | 1 cut(s) | 353 |
| PshBI | ATTAAT | 1 cut(s) | 1325 |
| Psp6I | CCWGG | 6 cut(s) | 164, 351, 448, 745, 856, 1503 |
| PspGI | CCWGG | 6 cut(s) | 164, 351, 448, 745, 856, 1503 |
| PspN4I | GGNNCC | 6 cut(s) | 162, 204, 600, 1137, 1138, 1596 |
| PspOMI | GGGCCC | 1 cut(s) | 1135 |
| PspPI | GGNCC | 3 cut(s) | 743, 1135, 1136 |
| PspXI | VCTCGAGB | 1 cut(s) | 767 |
| PsuI | RGATCY | 3 cut(s) | 202, 757, 1441 |
| PsyI | GACNNNGTC | 1 cut(s) | 747 |
| PvuII | CAGCTG | 2 cut(s) | 536, 726 |
| RsaI | GTAC | 7 cut(s) | 242, 284, 413, 658, 1077, 1082, 1331 |
| RsaNI | GTAC | 7 cut(s) | 241, 283, 412, 657, 1076, 1081, 1330 |
| RseI | CAYNNNNRTG | 3 cut(s) | 613, 1209, 1565 |
| SapI | GCTCTTC | 2 cut(s) | 798, 1083 |
| SaqAI | TTAA | 5 cut(s) | 483, 779, 872, 1029, 1325 |
| SatI | GCNGC | 4 cut(s) | 425, 727, 764, 1548 |
| Sau3AI | GATC | 7 cut(s) | 95, 202, 304, 757, 916, 1040, 1441 |
| Sau96I | GGNCC | 3 cut(s) | 743, 1135, 1136 |
| ScaI | AGTACT | 1 cut(s) | 1077 |
| SchI | GAGTC | 4 cut(s) | 466, 1249, 1442, 1532 |
| ScrFI | CCNGG | 6 cut(s) | 166, 353, 450, 747, 858, 1505 |
| SduI | GDGCHC | 5 cut(s) | 165, 376, 716, 950, 1139 |
| SexAI | ACCWGGT | 1 cut(s) | 745 |
| SfaNI | GCATC | 4 cut(s) | 695, 913, 1042, 1468 |
| Sfr274I | CTCGAG | 1 cut(s) | 767 |
| SfuI | TTCGAA | 1 cut(s) | 981 |
| SinI | GGWCC | 1 cut(s) | 743 |
| SlaI | CTCGAG | 1 cut(s) | 767 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 613, 1209, 1565 |
| SmlI | CTYRAG | 4 cut(s) | 588, 767, 1180, 1377 |
| SmoI | CTYRAG | 4 cut(s) | 588, 767, 1180, 1377 |
| SsiI | CCGC | 4 cut(s) | 764, 1160, 1545, 1548 |
| SspI | AATATT | 3 cut(s) | 776, 954, 1123 |
| SspMI | CTAG | 6 cut(s) | 549, 645, 717, 1275, 1458, 1698 |
| StyD4I | CCNGG | 6 cut(s) | 164, 351, 448, 745, 856, 1503 |
| StyI | CCWWGG | 1 cut(s) | 378 |
| TaaI | ACNGT | 5 cut(s) | 416, 518, 962, 1080, 1282 |
| TaqI | TCGA | 6 cut(s) | 98, 504, 768, 981, 1436, 1521 |
| TatI | WGTACW | 3 cut(s) | 656, 1075, 1080 |
| TauI | GCSGC | 2 cut(s) | 766, 1550 |
| TfiI | GAWTC | 3 cut(s) | 48, 54, 312 |
| Tru1I | TTAA | 5 cut(s) | 483, 779, 872, 1029, 1325 |
| Tru9I | TTAA | 5 cut(s) | 483, 779, 872, 1029, 1325 |
| TscAI | CASTG | 6 cut(s) | 192, 600, 1234, 1243, 1285, 1367 |
| TseI | GCWGC | 2 cut(s) | 424, 726 |
| TspDTI | ATGAA | 7 cut(s) | 356, 537, 1086, 1185, 1422, 1512, 1703 |
| TspGWI | ACGGA | 1 cut(s) | 80 |
| TspRI | CASTG | 6 cut(s) | 192, 600, 1234, 1243, 1285, 1367 |
| Tth111I | GACNNNGTC | 1 cut(s) | 747 |
| VpaK11BI | GGWCC | 1 cut(s) | 743 |
| VspI | ATTAAT | 1 cut(s) | 1325 |
| XapI | RAATTY | 2 cut(s) | 507, 930 |
| XceI | RCATGY | 1 cut(s) | 1705 |
| XhoI | CTCGAG | 1 cut(s) | 767 |
| XmnI | GAANNNNTTC | 2 cut(s) | 636, 1092 |
| XspI | CTAG | 6 cut(s) | 549, 645, 717, 1275, 1458, 1698 |
| ZrmI | AGTACT | 1 cut(s) | 1077 |