Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 754, 768 |
| AccB1I | GGYRCC | 1 cut(s) | 562 |
| AccI | GTMKAC | 2 cut(s) | 45, 118 |
| AciI | CCGC | 1 cut(s) | 74 |
| AclWI | GGATC | 3 cut(s) | 433, 487, 500 |
| AcuI | CTGAAG | 1 cut(s) | 152 |
| AcyI | GRCGYC | 2 cut(s) | 563, 648 |
| AdeI | CACNNNGTG | 2 cut(s) | 13, 54 |
| AfaI | GTAC | 1 cut(s) | 160 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 403, 697 |
| AgsI | TTSAA | 5 cut(s) | 230, 515, 580, 587, 788 |
| AjnI | CCWGG | 3 cut(s) | 650, 690, 740 |
| AluBI | AGCT | 1 cut(s) | 142 |
| AluI | AGCT | 1 cut(s) | 142 |
| Alw26I | GTCTC | 1 cut(s) | 398 |
| AlwI | GGATC | 3 cut(s) | 433, 487, 500 |
| AoxI | GGCC | 4 cut(s) | 127, 436, 736, 743 |
| ApeKI | GCWGC | 2 cut(s) | 88, 407 |
| AspLEI | GCGC | 2 cut(s) | 412, 565 |
| AspS9I | GGNCC | 5 cut(s) | 272, 326, 436, 688, 737 |
| AsuC2I | CCSGG | 1 cut(s) | 147 |
| AsuHPI | GGTGA | 1 cut(s) | 793 |
| AvaII | GGWCC | 3 cut(s) | 272, 326, 688 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 282, 315 |
| BamHI | GGATCC | 1 cut(s) | 492 |
| BanI | GGYRCC | 1 cut(s) | 562 |
| BbvI | GCAGC | 2 cut(s) | 75, 394 |
| BccI | CCATC | 2 cut(s) | 697, 772 |
| BceAI | ACGGC | 3 cut(s) | 66, 423, 714 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 80, 114, 443, 477 |
| BciT130I | CCWGG | 3 cut(s) | 652, 692, 742 |
| BciVI | GTATCC | 1 cut(s) | 70 |
| BcnI | CCSGG | 1 cut(s) | 147 |
| BcoDI | GTCTC | 1 cut(s) | 398 |
| BfaI | CTAG | 1 cut(s) | 525 |
| BfmI | CTRYAG | 3 cut(s) | 89, 283, 761 |
| BfoI | RGCGCY | 1 cut(s) | 566 |
| BfuAI | ACCTGC | 2 cut(s) | 754, 768 |
| BfuI | GTATCC | 1 cut(s) | 70 |
| BisI | GCNGC | 2 cut(s) | 89, 408 |
| BlsI | GCNGC | 2 cut(s) | 90, 409 |
| Bme1390I | CCNGG | 4 cut(s) | 147, 652, 692, 742 |
| Bme18I | GGWCC | 3 cut(s) | 272, 326, 688 |
| BmgT120I | GGNCC | 5 cut(s) | 272, 326, 436, 688, 737 |
| BmiI | GGNNCC | 4 cut(s) | 342, 494, 564, 739 |
| BmrFI | CCNGG | 4 cut(s) | 147, 652, 692, 742 |
| BmsI | GCATC | 2 cut(s) | 75, 525 |
| Bpu10I | CCTNAGC | 1 cut(s) | 684 |
| BpuMI | CCSGG | 1 cut(s) | 147 |
| BsaBI | GATNNNNATC | 1 cut(s) | 36 |
| BsaHI | GRCGYC | 2 cut(s) | 563, 648 |
| BsaI | GGTCTC | 1 cut(s) | 398 |
| BsaJI | CCNNGG | 4 cut(s) | 63, 146, 275, 740 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 403, 697 |
| Bse8I | GATNNNNATC | 1 cut(s) | 36 |
| BseBI | CCWGG | 3 cut(s) | 652, 692, 742 |
| BseDI | CCNNGG | 4 cut(s) | 63, 146, 275, 740 |
| BseGI | GGATG | 3 cut(s) | 540, 647, 760 |
| BseJI | GATNNNNATC | 1 cut(s) | 36 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 403, 697 |
| BseMII | CTCAG | 1 cut(s) | 698 |
| BseXI | GCAGC | 2 cut(s) | 75, 394 |
| BseYI | CCCAGC | 1 cut(s) | 707 |
| BshFI | GGCC | 4 cut(s) | 129, 438, 738, 745 |
| BshNI | GGYRCC | 1 cut(s) | 562 |
| BsiSI | CCGG | 2 cut(s) | 146, 329 |
| BslFI | GGGAC | 1 cut(s) | 393 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 403, 697 |
| BsmAI | GTCTC | 1 cut(s) | 398 |
| BsmFI | GGGAC | 1 cut(s) | 393 |
| BsmI | GAATGC | 1 cut(s) | 466 |
| BsnI | GGCC | 4 cut(s) | 129, 438, 738, 745 |
| Bso31I | GGTCTC | 1 cut(s) | 398 |
| Bsp143I | GATC | 7 cut(s) | 31, 97, 258, 425, 454, 492, 675 |
| BspACI | CCGC | 1 cut(s) | 74 |
| BspANI | GGCC | 4 cut(s) | 129, 438, 738, 745 |
| BspCNI | CTCAG | 1 cut(s) | 697 |
| BspHI | TCATGA | 1 cut(s) | 202 |
| BspLI | GGNNCC | 4 cut(s) | 342, 494, 564, 739 |
| BspMAI | CTGCAG | 2 cut(s) | 93, 765 |
| BspMI | ACCTGC | 2 cut(s) | 754, 768 |
| BspPI | GGATC | 3 cut(s) | 433, 487, 500 |
| BspQI | GCTCTTC | 1 cut(s) | 128 |
| BspT107I | GGYRCC | 1 cut(s) | 562 |
| BspTNI | GGTCTC | 1 cut(s) | 398 |
| BssECI | CCNNGG | 4 cut(s) | 63, 146, 275, 740 |
| BssMI | GATC | 7 cut(s) | 31, 97, 258, 425, 454, 492, 675 |
| BssNI | GRCGYC | 2 cut(s) | 563, 648 |
| BssT1I | CCWWGG | 2 cut(s) | 63, 275 |
| Bst2UI | CCWGG | 3 cut(s) | 652, 692, 742 |
| Bst4CI | ACNGT | 3 cut(s) | 239, 559, 573 |
| Bst6I | CTCTTC | 1 cut(s) | 128 |
| BstACI | GRCGYC | 2 cut(s) | 563, 648 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 368 |
| BstC8I | GCNNGC | 2 cut(s) | 81, 140 |
| BstDEI | CTNAG | 2 cut(s) | 660, 684 |
| BstF5I | GGATG | 3 cut(s) | 540, 647, 760 |
| BstH2I | RGCGCY | 1 cut(s) | 566 |
| BstHHI | GCGC | 2 cut(s) | 412, 565 |
| BstKTI | GATC | 7 cut(s) | 34, 100, 261, 428, 457, 495, 678 |
| BstMAI | GTCTC | 1 cut(s) | 398 |
| BstMBI | GATC | 7 cut(s) | 31, 97, 258, 425, 454, 492, 675 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 80, 85, 135, 368, 560 |
| BstNI | CCWGG | 3 cut(s) | 652, 692, 742 |
| BstSCI | CCNGG | 4 cut(s) | 145, 650, 690, 740 |
| BstSFI | CTRYAG | 3 cut(s) | 89, 283, 761 |
| BstV1I | GCAGC | 2 cut(s) | 75, 394 |
| BstX2I | RGATCY | 2 cut(s) | 425, 492 |
| BstYI | RGATCY | 2 cut(s) | 425, 492 |
| BsuI | GTATCC | 1 cut(s) | 70 |
| BsuRI | GGCC | 4 cut(s) | 129, 438, 738, 745 |
| BtgZI | GCGATG | 3 cut(s) | 98, 716, 791 |
| BtsCI | GGATG | 3 cut(s) | 540, 647, 760 |
| BveI | ACCTGC | 2 cut(s) | 754, 768 |
| Cac8I | GCNNGC | 2 cut(s) | 81, 140 |
| CciI | TCATGA | 1 cut(s) | 202 |
| CfoI | GCGC | 2 cut(s) | 412, 565 |
| Cfr13I | GGNCC | 5 cut(s) | 272, 326, 436, 688, 737 |
| CseI | GACGC | 1 cut(s) | 656 |
| Csp6I | GTAC | 1 cut(s) | 159 |
| CviAII | CATG | 7 cut(s) | 203, 262, 266, 335, 363, 625, 679 |
| CviQI | GTAC | 1 cut(s) | 159 |
| DdeI | CTNAG | 2 cut(s) | 660, 684 |
| DinI | GGCGCC | 1 cut(s) | 564 |
| DpnI | GATC | 7 cut(s) | 33, 99, 260, 427, 456, 494, 677 |
| DpnII | GATC | 7 cut(s) | 31, 97, 258, 425, 454, 492, 675 |
| DraIII | CACNNNGTG | 2 cut(s) | 13, 54 |
| Eam1104I | CTCTTC | 1 cut(s) | 128 |
| EarI | CTCTTC | 1 cut(s) | 128 |
| Eco130I | CCWWGG | 2 cut(s) | 63, 275 |
| Eco31I | GGTCTC | 1 cut(s) | 398 |
| Eco47I | GGWCC | 3 cut(s) | 272, 326, 688 |
| Eco57I | CTGAAG | 1 cut(s) | 152 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| EcoRII | CCWGG | 3 cut(s) | 650, 690, 740 |
| EcoT14I | CCWWGG | 2 cut(s) | 63, 275 |
| EcoT22I | ATGCAT | 1 cut(s) | 267 |
| EgeI | GGCGCC | 1 cut(s) | 564 |
| EheI | GGCGCC | 1 cut(s) | 564 |
| ErhI | CCWWGG | 2 cut(s) | 63, 275 |
| FaeI | CATG | 7 cut(s) | 206, 265, 269, 338, 366, 628, 682 |
| FaqI | GGGAC | 1 cut(s) | 393 |
| FatI | CATG | 7 cut(s) | 202, 261, 265, 334, 362, 624, 678 |
| FauI | CCCGC | 1 cut(s) | 67 |
| FauNDI | CATATG | 1 cut(s) | 180 |
| FblI | GTMKAC | 2 cut(s) | 45, 118 |
| Fnu4HI | GCNGC | 2 cut(s) | 89, 408 |
| FokI | GGATG | 3 cut(s) | 547, 654, 767 |
| Fsp4HI | GCNGC | 2 cut(s) | 89, 408 |
| FspBI | CTAG | 1 cut(s) | 525 |
| GlaI | GCGC | 2 cut(s) | 411, 564 |
| GluI | GCNGC | 2 cut(s) | 89, 408 |
| GsaI | CCCAGC | 1 cut(s) | 711 |
| HaeII | RGCGCY | 1 cut(s) | 566 |
| HaeIII | GGCC | 4 cut(s) | 129, 438, 738, 745 |
| HapII | CCGG | 2 cut(s) | 146, 329 |
| HgaI | GACGC | 1 cut(s) | 656 |
| HhaI | GCGC | 2 cut(s) | 412, 565 |
| Hin1I | GRCGYC | 2 cut(s) | 563, 648 |
| Hin1II | CATG | 7 cut(s) | 206, 265, 269, 338, 366, 628, 682 |
| Hin6I | GCGC | 2 cut(s) | 410, 563 |
| HinP1I | GCGC | 2 cut(s) | 410, 563 |
| HincII | GTYRAC | 2 cut(s) | 119, 657 |
| HindII | GTYRAC | 2 cut(s) | 119, 657 |
| HindIII | AAGCTT | 1 cut(s) | 140 |
| HinfI | GANTC | 3 cut(s) | 199, 349, 445 |
| HpaII | CCGG | 2 cut(s) | 146, 329 |
| HphI | GGTGA | 1 cut(s) | 793 |
| Hpy166II | GTNNAC | 3 cut(s) | 46, 119, 657 |
| Hpy188I | TCNGA | 5 cut(s) | 348, 459, 596, 609, 771 |
| Hpy188III | TCNNGA | 2 cut(s) | 189, 203 |
| Hpy8I | GTNNAC | 3 cut(s) | 46, 119, 657 |
| Hpy99I | CGWCG | 1 cut(s) | 559 |
| HpyCH4III | ACNGT | 3 cut(s) | 239, 559, 573 |
| HpyCH4V | TGCA | 5 cut(s) | 91, 265, 334, 371, 763 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 80, 85, 135, 368, 560 |
| HpyF3I | CTNAG | 2 cut(s) | 660, 684 |
| Hsp92I | GRCGYC | 2 cut(s) | 563, 648 |
| Hsp92II | CATG | 7 cut(s) | 206, 265, 269, 338, 366, 628, 682 |
| HspAI | GCGC | 2 cut(s) | 410, 563 |
| KasI | GGCGCC | 1 cut(s) | 562 |
| Kzo9I | GATC | 7 cut(s) | 31, 97, 258, 425, 454, 492, 675 |
| LguI | GCTCTTC | 1 cut(s) | 128 |
| Lsp1109I | GCAGC | 2 cut(s) | 75, 394 |
| LweI | GCATC | 2 cut(s) | 75, 525 |
| MaeI | CTAG | 1 cut(s) | 525 |
| MaeIII | GTNAC | 1 cut(s) | 644 |
| MalI | GATC | 7 cut(s) | 33, 99, 260, 427, 456, 494, 677 |
| MboI | GATC | 7 cut(s) | 31, 97, 258, 425, 454, 492, 675 |
| MboII | GAAGA | 2 cut(s) | 26, 145 |
| MflI | RGATCY | 2 cut(s) | 425, 492 |
| MluCI | AATT | 1 cut(s) | 230 |
| Mly113I | GGCGCC | 1 cut(s) | 563 |
| Mph1103I | ATGCAT | 1 cut(s) | 267 |
| MseI | TTAA | 1 cut(s) | 375 |
| MspI | CCGG | 2 cut(s) | 146, 329 |
| MspR9I | CCNGG | 4 cut(s) | 147, 652, 692, 742 |
| Mva1269I | GAATGC | 1 cut(s) | 466 |
| MvaI | CCWGG | 3 cut(s) | 652, 692, 742 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 80, 85, 135, 368, 560 |
| NarI | GGCGCC | 1 cut(s) | 563 |
| NciI | CCSGG | 1 cut(s) | 147 |
| NdeI | CATATG | 1 cut(s) | 180 |
| NdeII | GATC | 7 cut(s) | 31, 97, 258, 425, 454, 492, 675 |
| NlaIII | CATG | 7 cut(s) | 206, 265, 269, 338, 366, 628, 682 |
| NlaIV | GGNNCC | 4 cut(s) | 342, 494, 564, 739 |
| NmuCI | GTSAC | 1 cut(s) | 644 |
| NsiI | ATGCAT | 1 cut(s) | 267 |
| PagI | TCATGA | 1 cut(s) | 202 |
| PciSI | GCTCTTC | 1 cut(s) | 128 |
| PctI | GAATGC | 1 cut(s) | 466 |
| PfeI | GAWTC | 3 cut(s) | 199, 349, 445 |
| PkrI | GCNGC | 2 cut(s) | 90, 409 |
| PluTI | GGCGCC | 1 cut(s) | 566 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| Psp6I | CCWGG | 3 cut(s) | 650, 690, 740 |
| PspFI | CCCAGC | 1 cut(s) | 707 |
| PspGI | CCWGG | 3 cut(s) | 650, 690, 740 |
| PspN4I | GGNNCC | 4 cut(s) | 342, 494, 564, 739 |
| PspPI | GGNCC | 5 cut(s) | 272, 326, 436, 688, 737 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| PstI | CTGCAG | 2 cut(s) | 93, 765 |
| PsuI | RGATCY | 2 cut(s) | 425, 492 |
| RsaI | GTAC | 1 cut(s) | 160 |
| RsaNI | GTAC | 1 cut(s) | 159 |
| SalI | GTCGAC | 1 cut(s) | 117 |
| SapI | GCTCTTC | 1 cut(s) | 128 |
| SaqAI | TTAA | 1 cut(s) | 375 |
| SatI | GCNGC | 2 cut(s) | 89, 408 |
| Sau3AI | GATC | 7 cut(s) | 31, 97, 258, 425, 454, 492, 675 |
| Sau96I | GGNCC | 5 cut(s) | 272, 326, 436, 688, 737 |
| SbfI | CCTGCAGG | 1 cut(s) | 765 |
| ScrFI | CCNGG | 4 cut(s) | 147, 652, 692, 742 |
| SdaI | CCTGCAGG | 1 cut(s) | 765 |
| SetI | ASST | 9 cut(s) | 27, 144, 160, 169, 277, 342, 690, 762, 768 |
| SfaNI | GCATC | 2 cut(s) | 75, 525 |
| SfcI | CTRYAG | 3 cut(s) | 89, 283, 761 |
| SfoI | GGCGCC | 1 cut(s) | 564 |
| SinI | GGWCC | 3 cut(s) | 272, 326, 688 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 765 |
| Sse9I | AATT | 1 cut(s) | 230 |
| SsiI | CCGC | 1 cut(s) | 74 |
| SspDI | GGCGCC | 1 cut(s) | 562 |
| SspMI | CTAG | 1 cut(s) | 525 |
| StyD4I | CCNGG | 4 cut(s) | 145, 650, 690, 740 |
| StyI | CCWWGG | 2 cut(s) | 63, 275 |
| TaaI | ACNGT | 3 cut(s) | 239, 559, 573 |
| TaqI | TCGA | 3 cut(s) | 27, 118, 453 |
| TasI | AATT | 1 cut(s) | 230 |
| TfiI | GAWTC | 3 cut(s) | 199, 349, 445 |
| Tru1I | TTAA | 1 cut(s) | 375 |
| Tru9I | TTAA | 1 cut(s) | 375 |
| TseFI | GTSAC | 1 cut(s) | 644 |
| TseI | GCWGC | 2 cut(s) | 88, 407 |
| Tsp45I | GTSAC | 1 cut(s) | 644 |
| TspDTI | ATGAA | 6 cut(s) | 26, 142, 191, 197, 219, 613 |
| TspGWI | ACGGA | 2 cut(s) | 485, 737 |
| VpaK11BI | GGWCC | 3 cut(s) | 272, 326, 688 |
| XmiI | GTMKAC | 2 cut(s) | 45, 118 |
| XspI | CTAG | 1 cut(s) | 525 |
| Zsp2I | ATGCAT | 1 cut(s) | 267 |