Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 595 |
| Acc36I | ACCTGC | 1 cut(s) | 595 |
| AciI | CCGC | 2 cut(s) | 426, 491 |
| AcyI | GRCGYC | 1 cut(s) | 347 |
| AfaI | GTAC | 2 cut(s) | 22, 597 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 509, 569 |
| AgsI | TTSAA | 1 cut(s) | 161 |
| AhlI | ACTAGT | 2 cut(s) | 238, 325 |
| AluBI | AGCT | 5 cut(s) | 176, 191, 267, 617, 684 |
| AluI | AGCT | 5 cut(s) | 176, 191, 267, 617, 684 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 50 |
| AoxI | GGCC | 1 cut(s) | 628 |
| ApeKI | GCWGC | 3 cut(s) | 463, 472, 601 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 86, 118 |
| AspS9I | GGNCC | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 2 cut(s) | 440, 454 |
| AvaII | GGWCC | 1 cut(s) | 203 |
| BbvI | GCAGC | 3 cut(s) | 475, 484, 613 |
| BccI | CCATC | 2 cut(s) | 289, 620 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BcuI | ACTAGT | 2 cut(s) | 238, 325 |
| BfaI | CTAG | 4 cut(s) | 18, 239, 326, 678 |
| BfmI | CTRYAG | 3 cut(s) | 214, 388, 599 |
| BfuAI | ACCTGC | 1 cut(s) | 595 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 636 |
| BisI | GCNGC | 3 cut(s) | 464, 473, 602 |
| BlsI | GCNGC | 3 cut(s) | 465, 474, 603 |
| Bme18I | GGWCC | 1 cut(s) | 203 |
| BmgT120I | GGNCC | 1 cut(s) | 203 |
| BmiI | GGNNCC | 2 cut(s) | 282, 640 |
| BmsI | GCATC | 2 cut(s) | 127, 406 |
| BpmI | CTGGAG | 1 cut(s) | 162 |
| BsaHI | GRCGYC | 1 cut(s) | 347 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 2 cut(s) | 24, 206 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 509, 569 |
| Bse3DI | GCAATG | 1 cut(s) | 84 |
| BseDI | CCNNGG | 2 cut(s) | 24, 206 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 509, 569 |
| BseMI | GCAATG | 1 cut(s) | 84 |
| BseMII | CTCAG | 1 cut(s) | 349 |
| BseXI | GCAGC | 3 cut(s) | 475, 484, 613 |
| BseYI | CCCAGC | 1 cut(s) | 617 |
| BsgI | GTGCAG | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 630 |
| BsiSI | CCGG | 1 cut(s) | 503 |
| BslFI | GGGAC | 3 cut(s) | 263, 507, 593 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 509, 569 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsmFI | GGGAC | 3 cut(s) | 263, 507, 593 |
| BsnI | GGCC | 1 cut(s) | 630 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| Bsp143I | GATC | 4 cut(s) | 106, 166, 354, 363 |
| Bsp19I | CCATGG | 1 cut(s) | 24 |
| BspACI | CCGC | 2 cut(s) | 426, 491 |
| BspANI | GGCC | 1 cut(s) | 630 |
| BspCNI | CTCAG | 1 cut(s) | 348 |
| BspHI | TCATGA | 1 cut(s) | 169 |
| BspLI | GGNNCC | 2 cut(s) | 282, 640 |
| BspMAI | CTGCAG | 1 cut(s) | 603 |
| BspMI | ACCTGC | 1 cut(s) | 595 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrDI | GCAATG | 1 cut(s) | 84 |
| BssECI | CCNNGG | 2 cut(s) | 24, 206 |
| BssMI | GATC | 4 cut(s) | 106, 166, 354, 363 |
| BssNI | GRCGYC | 1 cut(s) | 347 |
| BssT1I | CCWWGG | 1 cut(s) | 24 |
| Bst4CI | ACNGT | 5 cut(s) | 182, 207, 231, 498, 584 |
| BstACI | GRCGYC | 1 cut(s) | 347 |
| BstC8I | GCNNGC | 1 cut(s) | 632 |
| BstDEI | CTNAG | 1 cut(s) | 335 |
| BstDSI | CCRYGG | 2 cut(s) | 24, 206 |
| BstKTI | GATC | 4 cut(s) | 109, 169, 357, 366 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstMBI | GATC | 4 cut(s) | 106, 166, 354, 363 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 469, 472, 636 |
| BstSFI | CTRYAG | 3 cut(s) | 214, 388, 599 |
| BstV1I | GCAGC | 3 cut(s) | 475, 484, 613 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 140 |
| BsuRI | GGCC | 1 cut(s) | 630 |
| BtgI | CCRYGG | 2 cut(s) | 24, 206 |
| BveI | ACCTGC | 1 cut(s) | 595 |
| Cac8I | GCNNGC | 1 cut(s) | 632 |
| CaiI | CAGNNNCTG | 1 cut(s) | 50 |
| CciI | TCATGA | 1 cut(s) | 169 |
| Cfr13I | GGNCC | 1 cut(s) | 203 |
| CseI | GACGC | 4 cut(s) | 60, 336, 340, 661 |
| Csp6I | GTAC | 2 cut(s) | 21, 596 |
| CviAII | CATG | 7 cut(s) | 25, 134, 170, 197, 413, 635, 669 |
| CviQI | GTAC | 2 cut(s) | 21, 596 |
| DdeI | CTNAG | 1 cut(s) | 335 |
| DpnI | GATC | 4 cut(s) | 108, 168, 356, 365 |
| DpnII | GATC | 4 cut(s) | 106, 166, 354, 363 |
| Eco130I | CCWWGG | 1 cut(s) | 24 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| Eco47I | GGWCC | 1 cut(s) | 203 |
| EcoT14I | CCWWGG | 1 cut(s) | 24 |
| ErhI | CCWWGG | 1 cut(s) | 24 |
| FaeI | CATG | 7 cut(s) | 28, 137, 173, 200, 416, 638, 672 |
| FaqI | GGGAC | 3 cut(s) | 263, 507, 593 |
| FatI | CATG | 7 cut(s) | 24, 133, 169, 196, 412, 634, 668 |
| FauI | CCCGC | 1 cut(s) | 484 |
| Fnu4HI | GCNGC | 3 cut(s) | 464, 473, 602 |
| Fsp4HI | GCNGC | 3 cut(s) | 464, 473, 602 |
| FspBI | CTAG | 4 cut(s) | 18, 239, 326, 678 |
| GluI | GCNGC | 3 cut(s) | 464, 473, 602 |
| GsaI | CCCAGC | 1 cut(s) | 621 |
| GsuI | CTGGAG | 1 cut(s) | 162 |
| HaeIII | GGCC | 1 cut(s) | 630 |
| HapII | CCGG | 1 cut(s) | 503 |
| HgaI | GACGC | 4 cut(s) | 60, 336, 340, 661 |
| Hin1I | GRCGYC | 1 cut(s) | 347 |
| Hin1II | CATG | 7 cut(s) | 28, 137, 173, 200, 416, 638, 672 |
| HinfI | GANTC | 2 cut(s) | 47, 664 |
| HpaII | CCGG | 1 cut(s) | 503 |
| HphI | GGTGA | 2 cut(s) | 440, 454 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 338, 352, 526 |
| Hpy188III | TCNNGA | 2 cut(s) | 170, 537 |
| Hpy99I | CGWCG | 1 cut(s) | 76 |
| HpyAV | CCTTC | 1 cut(s) | 112 |
| HpyCH4III | ACNGT | 5 cut(s) | 182, 207, 231, 498, 584 |
| HpyCH4V | TGCA | 5 cut(s) | 53, 196, 463, 601, 634 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 469, 472, 636 |
| HpyF3I | CTNAG | 1 cut(s) | 335 |
| Hsp92I | GRCGYC | 1 cut(s) | 347 |
| Hsp92II | CATG | 7 cut(s) | 28, 137, 173, 200, 416, 638, 672 |
| Kzo9I | GATC | 4 cut(s) | 106, 166, 354, 363 |
| LmnI | GCTCC | 3 cut(s) | 550, 644, 681 |
| Lsp1109I | GCAGC | 3 cut(s) | 475, 484, 613 |
| LweI | GCATC | 2 cut(s) | 127, 406 |
| MaeI | CTAG | 4 cut(s) | 18, 239, 326, 678 |
| MaeIII | GTNAC | 3 cut(s) | 321, 328, 673 |
| MalI | GATC | 4 cut(s) | 108, 168, 356, 365 |
| MboI | GATC | 4 cut(s) | 106, 166, 354, 363 |
| MboII | GAAGA | 2 cut(s) | 304, 635 |
| MluCI | AATT | 2 cut(s) | 161, 565 |
| MlyI | GAGTC | 1 cut(s) | 673 |
| MnlI | CCTC | 1 cut(s) | 194 |
| MspA1I | CMGCKG | 1 cut(s) | 617 |
| MspI | CCGG | 1 cut(s) | 503 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 469, 472, 636 |
| NcoI | CCATGG | 1 cut(s) | 24 |
| NdeII | GATC | 4 cut(s) | 106, 166, 354, 363 |
| NlaIII | CATG | 7 cut(s) | 28, 137, 173, 200, 416, 638, 672 |
| NlaIV | GGNNCC | 2 cut(s) | 282, 640 |
| NmuCI | GTSAC | 2 cut(s) | 328, 673 |
| PagI | TCATGA | 1 cut(s) | 169 |
| PaqCI | CACCTGC | 1 cut(s) | 595 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 230 |
| PfeI | GAWTC | 1 cut(s) | 47 |
| PkrI | GCNGC | 3 cut(s) | 465, 474, 603 |
| PleI | GAGTC | 1 cut(s) | 672 |
| PpsI | GAGTC | 1 cut(s) | 672 |
| PspFI | CCCAGC | 1 cut(s) | 617 |
| PspN4I | GGNNCC | 2 cut(s) | 282, 640 |
| PspPI | GGNCC | 1 cut(s) | 203 |
| PstI | CTGCAG | 1 cut(s) | 603 |
| PstNI | CAGNNNCTG | 1 cut(s) | 50 |
| PvuII | CAGCTG | 1 cut(s) | 617 |
| RsaI | GTAC | 2 cut(s) | 22, 597 |
| RsaNI | GTAC | 2 cut(s) | 21, 596 |
| SatI | GCNGC | 3 cut(s) | 464, 473, 602 |
| Sau3AI | GATC | 4 cut(s) | 106, 166, 354, 363 |
| Sau96I | GGNCC | 1 cut(s) | 203 |
| SchI | GAGTC | 1 cut(s) | 673 |
| SetI | ASST | 7 cut(s) | 178, 193, 269, 565, 609, 619, 686 |
| SfaNI | GCATC | 2 cut(s) | 127, 406 |
| SfcI | CTRYAG | 3 cut(s) | 214, 388, 599 |
| SinI | GGWCC | 1 cut(s) | 203 |
| SpeI | ACTAGT | 2 cut(s) | 238, 325 |
| Sse9I | AATT | 2 cut(s) | 161, 565 |
| SsiI | CCGC | 2 cut(s) | 426, 491 |
| SspMI | CTAG | 4 cut(s) | 18, 239, 326, 678 |
| StyI | CCWWGG | 1 cut(s) | 24 |
| TaaI | ACNGT | 5 cut(s) | 182, 207, 231, 498, 584 |
| TaqI | TCGA | 4 cut(s) | 5, 105, 165, 233 |
| TasI | AATT | 2 cut(s) | 161, 565 |
| TfiI | GAWTC | 1 cut(s) | 47 |
| TseFI | GTSAC | 2 cut(s) | 328, 673 |
| TseI | GCWGC | 3 cut(s) | 463, 472, 601 |
| Tsp45I | GTSAC | 2 cut(s) | 328, 673 |
| TspDTI | ATGAA | 3 cut(s) | 77, 186, 384 |
| TspGWI | ACGGA | 1 cut(s) | 273 |
| VpaK11BI | GGWCC | 1 cut(s) | 203 |
| XspI | CTAG | 4 cut(s) | 18, 239, 326, 678 |