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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 304 |
| AciI | CCGC | 6 cut(s) | 304, 358, 373, 490, 507, 572 |
| AclWI | GGATC | 2 cut(s) | 349, 541 |
| AcsI | RAATTY | 1 cut(s) | 560 |
| AcyI | GRCGYC | 1 cut(s) | 254 |
| AfaI | GTAC | 1 cut(s) | 28 |
| AflIII | ACRYGT | 1 cut(s) | 88 |
| AgsI | TTSAA | 3 cut(s) | 101, 399, 444 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 113, 145 |
| AleI | CACNNNNGTG | 1 cut(s) | 93 |
| AluBI | AGCT | 2 cut(s) | 218, 383 |
| AluI | AGCT | 2 cut(s) | 218, 383 |
| Alw21I | GWGCWC | 1 cut(s) | 220 |
| Alw26I | GTCTC | 1 cut(s) | 619 |
| AlwI | GGATC | 2 cut(s) | 349, 541 |
| Ama87I | CYCGRG | 2 cut(s) | 55, 213 |
| AoxI | GGCC | 1 cut(s) | 512 |
| ApoI | RAATTY | 1 cut(s) | 560 |
| AspLEI | GCGC | 1 cut(s) | 85 |
| AspS9I | GGNCC | 1 cut(s) | 512 |
| AsuC2I | CCSGG | 2 cut(s) | 583, 605 |
| AsuHPI | GGTGA | 4 cut(s) | 223, 405, 532, 545 |
| AvaI | CYCGRG | 2 cut(s) | 55, 213 |
| BanII | GRGCYC | 1 cut(s) | 220 |
| Bbv12I | GWGCWC | 1 cut(s) | 220 |
| BccI | CCATC | 1 cut(s) | 160 |
| BcnI | CCSGG | 2 cut(s) | 583, 605 |
| BcoDI | GTCTC | 1 cut(s) | 619 |
| BfaI | CTAG | 1 cut(s) | 35 |
| BfoI | RGCGCY | 1 cut(s) | 86 |
| BmcAI | AGTACT | 1 cut(s) | 28 |
| Bme1390I | CCNGG | 2 cut(s) | 583, 605 |
| BmeT110I | CYCGRG | 2 cut(s) | 55, 213 |
| BmgT120I | GGNCC | 1 cut(s) | 512 |
| BmiI | GGNNCC | 1 cut(s) | 171 |
| BmrFI | CCNGG | 2 cut(s) | 583, 605 |
| BmsI | GCATC | 1 cut(s) | 419 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 38, 70 |
| BpmI | CTGGAG | 2 cut(s) | 65, 156 |
| BpuEI | CTTGAG | 1 cut(s) | 154 |
| BpuMI | CCSGG | 2 cut(s) | 583, 605 |
| BsaBI | GATNNNNATC | 1 cut(s) | 399 |
| BsaHI | GRCGYC | 1 cut(s) | 254 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bse1I | ACTGG | 2 cut(s) | 173, 515 |
| Bse8I | GATNNNNATC | 1 cut(s) | 399 |
| BseGI | GGATG | 1 cut(s) | 430 |
| BseJI | GATNNNNATC | 1 cut(s) | 399 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 2 cut(s) | 173, 515 |
| BseRI | GAGGAG | 2 cut(s) | 210, 359 |
| BseYI | CCCAGC | 2 cut(s) | 77, 234 |
| BshFI | GGCC | 1 cut(s) | 514 |
| BsiHKAI | GWGCWC | 1 cut(s) | 220 |
| BsiHKCI | CYCGRG | 2 cut(s) | 55, 213 |
| BsiSI | CCGG | 2 cut(s) | 583, 605 |
| BslFI | GGGAC | 1 cut(s) | 539 |
| BsmAI | GTCTC | 1 cut(s) | 619 |
| BsmBI | CGTCTC | 1 cut(s) | 619 |
| BsmFI | GGGAC | 1 cut(s) | 539 |
| BsnI | GGCC | 1 cut(s) | 514 |
| BsoBI | CYCGRG | 2 cut(s) | 55, 213 |
| Bsp1286I | GDGCHC | 1 cut(s) | 220 |
| Bsp143I | GATC | 3 cut(s) | 31, 354, 533 |
| BspACI | CCGC | 6 cut(s) | 304, 358, 373, 490, 507, 572 |
| BspANI | GGCC | 1 cut(s) | 514 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspLI | GGNNCC | 1 cut(s) | 171 |
| BspPI | GGATC | 2 cut(s) | 349, 541 |
| BsrBI | CCGCTC | 1 cut(s) | 304 |
| BsrI | ACTGG | 2 cut(s) | 173, 515 |
| BssMI | GATC | 3 cut(s) | 31, 354, 533 |
| BssNI | GRCGYC | 1 cut(s) | 254 |
| Bst6I | CTCTTC | 1 cut(s) | 322 |
| BstACI | GRCGYC | 1 cut(s) | 254 |
| BstDEI | CTNAG | 2 cut(s) | 282, 503 |
| BstF5I | GGATG | 1 cut(s) | 430 |
| BstH2I | RGCGCY | 1 cut(s) | 86 |
| BstHHI | GCGC | 1 cut(s) | 85 |
| BstKTI | GATC | 3 cut(s) | 34, 357, 536 |
| BstMAI | GTCTC | 1 cut(s) | 619 |
| BstMBI | GATC | 3 cut(s) | 31, 354, 533 |
| BstSCI | CCNGG | 2 cut(s) | 581, 603 |
| BstX2I | RGATCY | 1 cut(s) | 354 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 148, 522 |
| BstYI | RGATCY | 1 cut(s) | 354 |
| BsuRI | GGCC | 1 cut(s) | 514 |
| BtsCI | GGATG | 1 cut(s) | 430 |
| BtsI | GCAGTG | 1 cut(s) | 112 |
| BtsIMutI | CAGTG | 3 cut(s) | 112, 279, 522 |
| CfoI | GCGC | 1 cut(s) | 85 |
| Cfr13I | GGNCC | 1 cut(s) | 512 |
| CseI | GACGC | 1 cut(s) | 243 |
| Csp6I | GTAC | 1 cut(s) | 27 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 268, 303 |
| CviAII | CATG | 5 cut(s) | 19, 178, 258, 437, 621 |
| CviJI | RGCY | 6 cut(s) | 170, 218, 329, 383, 514, 550 |
| CviKI_1 | RGCY | 6 cut(s) | 170, 218, 329, 383, 514, 550 |
| CviQI | GTAC | 1 cut(s) | 27 |
| DdeI | CTNAG | 2 cut(s) | 282, 503 |
| DpnI | GATC | 3 cut(s) | 33, 356, 535 |
| DpnII | GATC | 3 cut(s) | 31, 354, 533 |
| Eam1104I | CTCTTC | 1 cut(s) | 322 |
| EarI | CTCTTC | 1 cut(s) | 322 |
| Ecl136II | GAGCTC | 1 cut(s) | 218 |
| Eco24I | GRGCYC | 1 cut(s) | 220 |
| Eco32I | GATATC | 1 cut(s) | 464 |
| Eco53kI | GAGCTC | 1 cut(s) | 218 |
| Eco88I | CYCGRG | 2 cut(s) | 55, 213 |
| EcoICRI | GAGCTC | 1 cut(s) | 218 |
| EcoRV | GATATC | 1 cut(s) | 464 |
| EcoT38I | GRGCYC | 1 cut(s) | 220 |
| Esp3I | CGTCTC | 1 cut(s) | 619 |
| FaeI | CATG | 5 cut(s) | 22, 181, 261, 440, 624 |
| FaqI | GGGAC | 1 cut(s) | 539 |
| FatI | CATG | 5 cut(s) | 18, 177, 257, 436, 620 |
| FauI | CCCGC | 2 cut(s) | 297, 366 |
| FokI | GGATG | 1 cut(s) | 437 |
| FriOI | GRGCYC | 1 cut(s) | 220 |
| FspBI | CTAG | 1 cut(s) | 35 |
| GlaI | GCGC | 1 cut(s) | 84 |
| GsaI | CCCAGC | 2 cut(s) | 81, 238 |
| GsuI | CTGGAG | 2 cut(s) | 65, 156 |
| HaeII | RGCGCY | 1 cut(s) | 86 |
| HaeIII | GGCC | 1 cut(s) | 514 |
| HapII | CCGG | 2 cut(s) | 583, 605 |
| HgaI | GACGC | 1 cut(s) | 243 |
| HhaI | GCGC | 1 cut(s) | 85 |
| Hin1I | GRCGYC | 1 cut(s) | 254 |
| Hin1II | CATG | 5 cut(s) | 22, 181, 261, 440, 624 |
| Hin6I | GCGC | 1 cut(s) | 83 |
| HinP1I | GCGC | 1 cut(s) | 83 |
| HindIII | AAGCTT | 1 cut(s) | 381 |
| HinfI | GANTC | 3 cut(s) | 208, 268, 395 |
| HpaII | CCGG | 2 cut(s) | 583, 605 |
| HphI | GGTGA | 4 cut(s) | 223, 405, 532, 545 |
| Hpy166II | GTNNAC | 2 cut(s) | 500, 588 |
| Hpy188I | TCNGA | 2 cut(s) | 67, 473 |
| Hpy188III | TCNNGA | 3 cut(s) | 44, 133, 404 |
| Hpy8I | GTNNAC | 2 cut(s) | 500, 588 |
| HpyAV | CCTTC | 1 cut(s) | 286 |
| HpyCH4IV | ACGT | 1 cut(s) | 90 |
| HpyCH4V | TGCA | 3 cut(s) | 436, 448, 520 |
| HpyF3I | CTNAG | 2 cut(s) | 282, 503 |
| HpySE526I | ACGT | 1 cut(s) | 90 |
| Hsp92I | GRCGYC | 1 cut(s) | 254 |
| Hsp92II | CATG | 5 cut(s) | 22, 181, 261, 440, 624 |
| HspAI | GCGC | 1 cut(s) | 83 |
| Kzo9I | GATC | 3 cut(s) | 31, 354, 533 |
| LmnI | GCTCC | 2 cut(s) | 175, 223 |
| LweI | GCATC | 1 cut(s) | 419 |
| MaeI | CTAG | 1 cut(s) | 35 |
| MaeII | ACGT | 1 cut(s) | 90 |
| MaeIII | GTNAC | 1 cut(s) | 115 |
| MalI | GATC | 3 cut(s) | 33, 356, 535 |
| MbiI | CCGCTC | 1 cut(s) | 304 |
| MboI | GATC | 3 cut(s) | 31, 354, 533 |
| MboII | GAAGA | 3 cut(s) | 309, 361, 364 |
| MflI | RGATCY | 1 cut(s) | 354 |
| MhlI | GDGCHC | 1 cut(s) | 220 |
| MluCI | AATT | 3 cut(s) | 111, 121, 560 |
| MlyI | GAGTC | 1 cut(s) | 277 |
| MmeI | TCCRAC | 1 cut(s) | 451 |
| MnlI | CCTC | 8 cut(s) | 40, 231, 277, 328, 337, 363, 415, 451 |
| MseI | TTAA | 1 cut(s) | 429 |
| MslI | CAYNNNNRTG | 1 cut(s) | 93 |
| MspI | CCGG | 2 cut(s) | 583, 605 |
| MspR9I | CCNGG | 2 cut(s) | 583, 605 |
| NciI | CCSGG | 2 cut(s) | 583, 605 |
| NdeII | GATC | 3 cut(s) | 31, 354, 533 |
| NlaIII | CATG | 5 cut(s) | 22, 181, 261, 440, 624 |
| NlaIV | GGNNCC | 1 cut(s) | 171 |
| NmuCI | GTSAC | 1 cut(s) | 115 |
| OliI | CACNNNNGTG | 1 cut(s) | 93 |
| PfeI | GAWTC | 2 cut(s) | 208, 395 |
| PleI | GAGTC | 1 cut(s) | 276 |
| PpsI | GAGTC | 1 cut(s) | 276 |
| Psp124BI | GAGCTC | 1 cut(s) | 220 |
| PspFI | CCCAGC | 2 cut(s) | 77, 234 |
| PspN4I | GGNNCC | 1 cut(s) | 171 |
| PspPI | GGNCC | 1 cut(s) | 512 |
| PsuI | RGATCY | 1 cut(s) | 354 |
| RsaI | GTAC | 1 cut(s) | 28 |
| RsaNI | GTAC | 1 cut(s) | 27 |
| RseI | CAYNNNNRTG | 1 cut(s) | 93 |
| SacI | GAGCTC | 1 cut(s) | 220 |
| SaqAI | TTAA | 1 cut(s) | 429 |
| Sau3AI | GATC | 3 cut(s) | 31, 354, 533 |
| Sau96I | GGNCC | 1 cut(s) | 512 |
| ScaI | AGTACT | 1 cut(s) | 28 |
| SchI | GAGTC | 1 cut(s) | 277 |
| ScrFI | CCNGG | 2 cut(s) | 583, 605 |
| SduI | GDGCHC | 1 cut(s) | 220 |
| SetI | ASST | 6 cut(s) | 51, 93, 220, 288, 385, 558 |
| SfaNI | GCATC | 1 cut(s) | 419 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 93 |
| SmlI | CTYRAG | 1 cut(s) | 133 |
| SmoI | CTYRAG | 1 cut(s) | 133 |
| Sse9I | AATT | 3 cut(s) | 111, 121, 560 |
| SsiI | CCGC | 6 cut(s) | 304, 358, 373, 490, 507, 572 |
| SspMI | CTAG | 1 cut(s) | 35 |
| SstI | GAGCTC | 1 cut(s) | 220 |
| StyD4I | CCNGG | 2 cut(s) | 581, 603 |
| TaiI | ACGT | 1 cut(s) | 93 |
| TasI | AATT | 3 cut(s) | 111, 121, 560 |
| TatI | WGTACW | 1 cut(s) | 26 |
| TfiI | GAWTC | 2 cut(s) | 208, 395 |
| Tru1I | TTAA | 1 cut(s) | 429 |
| Tru9I | TTAA | 1 cut(s) | 429 |
| TscAI | CASTG | 3 cut(s) | 112, 286, 522 |
| TseFI | GTSAC | 1 cut(s) | 115 |
| Tsp45I | GTSAC | 1 cut(s) | 115 |
| TspDTI | ATGAA | 1 cut(s) | 495 |
| TspGWI | ACGGA | 1 cut(s) | 23 |
| TspRI | CASTG | 3 cut(s) | 112, 286, 522 |
| XapI | RAATTY | 1 cut(s) | 560 |
| XspI | CTAG | 1 cut(s) | 35 |
| ZrmI | AGTACT | 1 cut(s) | 28 |