transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 258 |
| AccI | GTMKAC | 3 cut(s) | 19, 52, 192 |
| AccII | CGCG | 1 cut(s) | 189 |
| AciI | CCGC | 2 cut(s) | 416, 749 |
| AclWI | GGATC | 2 cut(s) | 15, 542 |
| AcsI | RAATTY | 1 cut(s) | 641 |
| AcyI | GRCGYC | 2 cut(s) | 195, 255 |
| AdeI | CACNNNGTG | 1 cut(s) | 110 |
| AfaI | GTAC | 3 cut(s) | 44, 314, 379 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 238 |
| AflIII | ACRYGT | 1 cut(s) | 187 |
| AgsI | TTSAA | 1 cut(s) | 538 |
| AjnI | CCWGG | 2 cut(s) | 69, 308 |
| AluBI | AGCT | 6 cut(s) | 217, 455, 461, 508, 737, 743 |
| AluI | AGCT | 6 cut(s) | 217, 455, 461, 508, 737, 743 |
| Alw26I | GTCTC | 4 cut(s) | 169, 262, 409, 816 |
| AlwI | GGATC | 2 cut(s) | 15, 542 |
| Ama87I | CYCGRG | 1 cut(s) | 406 |
| AoxI | GGCC | 2 cut(s) | 291, 306 |
| ApeKI | GCWGC | 2 cut(s) | 743, 746 |
| ApoI | RAATTY | 1 cut(s) | 641 |
| AspLEI | GCGC | 1 cut(s) | 287 |
| AspS9I | GGNCC | 2 cut(s) | 273, 523 |
| AsuC2I | CCSGG | 1 cut(s) | 277 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| AvaI | CYCGRG | 1 cut(s) | 406 |
| AvaII | GGWCC | 2 cut(s) | 273, 523 |
| BbvI | GCAGC | 2 cut(s) | 730, 733 |
| BccI | CCATC | 6 cut(s) | 54, 103, 298, 346, 490, 508 |
| BceAI | ACGGC | 2 cut(s) | 93, 331 |
| BciT130I | CCWGG | 2 cut(s) | 71, 310 |
| BcnI | CCSGG | 1 cut(s) | 277 |
| BcoDI | GTCTC | 4 cut(s) | 169, 262, 409, 816 |
| BfaI | CTAG | 1 cut(s) | 456 |
| BfmI | CTRYAG | 1 cut(s) | 738 |
| BisI | GCNGC | 2 cut(s) | 744, 747 |
| BlsI | GCNGC | 2 cut(s) | 745, 748 |
| Bme1390I | CCNGG | 3 cut(s) | 71, 277, 310 |
| Bme18I | GGWCC | 2 cut(s) | 273, 523 |
| BmeT110I | CYCGRG | 1 cut(s) | 406 |
| BmgT120I | GGNCC | 2 cut(s) | 273, 523 |
| BmiI | GGNNCC | 5 cut(s) | 75, 230, 275, 519, 798 |
| BmrFI | CCNGG | 3 cut(s) | 71, 277, 310 |
| BmrI | ACTGGG | 1 cut(s) | 621 |
| BmuI | ACTGGG | 1 cut(s) | 621 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 389, 421 |
| BpmI | CTGGAG | 3 cut(s) | 53, 151, 483 |
| BpuEI | CTTGAG | 2 cut(s) | 239, 502 |
| BpuMI | CCSGG | 1 cut(s) | 277 |
| BsaHI | GRCGYC | 2 cut(s) | 195, 255 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 347, 377 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 238 |
| Bse118I | RCCGGY | 1 cut(s) | 520 |
| Bse1I | ACTGG | 6 cut(s) | 40, 118, 168, 471, 602, 616 |
| BseBI | CCWGG | 2 cut(s) | 71, 310 |
| BseGI | GGATG | 2 cut(s) | 519, 757 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseMII | CTCAG | 1 cut(s) | 578 |
| BseNI | ACTGG | 6 cut(s) | 40, 118, 168, 471, 602, 616 |
| BseRI | GAGGAG | 1 cut(s) | 706 |
| BseXI | GCAGC | 2 cut(s) | 730, 733 |
| BseYI | CCCAGC | 1 cut(s) | 508 |
| Bsh1236I | CGCG | 1 cut(s) | 189 |
| BshFI | GGCC | 2 cut(s) | 293, 308 |
| BsiHKCI | CYCGRG | 1 cut(s) | 406 |
| BsiSI | CCGG | 4 cut(s) | 134, 277, 521, 815 |
| BslFI | GGGAC | 2 cut(s) | 259, 445 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BsmAI | GTCTC | 4 cut(s) | 169, 262, 409, 816 |
| BsmBI | CGTCTC | 2 cut(s) | 169, 262 |
| BsmFI | GGGAC | 2 cut(s) | 259, 445 |
| BsnI | GGCC | 2 cut(s) | 293, 308 |
| BsoBI | CYCGRG | 1 cut(s) | 406 |
| Bsp143I | GATC | 4 cut(s) | 7, 249, 382, 547 |
| BspACI | CCGC | 2 cut(s) | 416, 749 |
| BspANI | GGCC | 2 cut(s) | 293, 308 |
| BspCNI | CTCAG | 1 cut(s) | 577 |
| BspFNI | CGCG | 1 cut(s) | 189 |
| BspHI | TCATGA | 1 cut(s) | 544 |
| BspLI | GGNNCC | 5 cut(s) | 75, 230, 275, 519, 798 |
| BspPI | GGATC | 2 cut(s) | 15, 542 |
| BsrFI | RCCGGY | 1 cut(s) | 520 |
| BsrI | ACTGG | 6 cut(s) | 40, 118, 168, 471, 602, 616 |
| BssAI | RCCGGY | 1 cut(s) | 520 |
| BssMI | GATC | 4 cut(s) | 7, 249, 382, 547 |
| BssNI | GRCGYC | 2 cut(s) | 195, 255 |
| Bst2UI | CCWGG | 2 cut(s) | 71, 310 |
| Bst4CI | ACNGT | 2 cut(s) | 34, 534 |
| Bst6I | CTCTTC | 2 cut(s) | 660, 783 |
| BstACI | GRCGYC | 2 cut(s) | 195, 255 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 341 |
| BstC8I | GCNNGC | 2 cut(s) | 683, 777 |
| BstDEI | CTNAG | 5 cut(s) | 11, 179, 213, 564, 861 |
| BstF5I | GGATG | 2 cut(s) | 519, 757 |
| BstFNI | CGCG | 1 cut(s) | 189 |
| BstHHI | GCGC | 1 cut(s) | 287 |
| BstKTI | GATC | 4 cut(s) | 10, 252, 385, 550 |
| BstMAI | GTCTC | 4 cut(s) | 169, 262, 409, 816 |
| BstMBI | GATC | 4 cut(s) | 7, 249, 382, 547 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 114, 341, 526, 743 |
| BstNI | CCWGG | 2 cut(s) | 71, 310 |
| BstSCI | CCNGG | 3 cut(s) | 69, 275, 308 |
| BstSFI | CTRYAG | 1 cut(s) | 738 |
| BstUI | CGCG | 1 cut(s) | 189 |
| BstV1I | GCAGC | 2 cut(s) | 730, 733 |
| BstX2I | RGATCY | 1 cut(s) | 7 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 496 |
| BstYI | RGATCY | 1 cut(s) | 7 |
| BsuRI | GGCC | 2 cut(s) | 293, 308 |
| BtsCI | GGATG | 2 cut(s) | 519, 757 |
| BtsI | GCAGTG | 2 cut(s) | 128, 342 |
| BtsIMutI | CAGTG | 3 cut(s) | 128, 342, 478 |
| Cac8I | GCNNGC | 2 cut(s) | 683, 777 |
| CciI | TCATGA | 1 cut(s) | 544 |
| CfoI | GCGC | 1 cut(s) | 287 |
| Cfr10I | RCCGGY | 1 cut(s) | 520 |
| Cfr13I | GGNCC | 2 cut(s) | 273, 523 |
| CseI | GACGC | 3 cut(s) | 151, 178, 203 |
| Csp6I | GTAC | 3 cut(s) | 43, 313, 378 |
| CviAII | CATG | 3 cut(s) | 545, 652, 764 |
| CviQI | GTAC | 3 cut(s) | 43, 313, 378 |
| DdeI | CTNAG | 5 cut(s) | 11, 179, 213, 564, 861 |
| DpnI | GATC | 4 cut(s) | 9, 251, 384, 549 |
| DpnII | GATC | 4 cut(s) | 7, 249, 382, 547 |
| DraIII | CACNNNGTG | 1 cut(s) | 110 |
| Eam1104I | CTCTTC | 2 cut(s) | 660, 783 |
| EarI | CTCTTC | 2 cut(s) | 660, 783 |
| Eco47I | GGWCC | 2 cut(s) | 273, 523 |
| Eco88I | CYCGRG | 1 cut(s) | 406 |
| EcoO109I | RGGNCCY | 1 cut(s) | 273 |
| EcoRII | CCWGG | 2 cut(s) | 69, 308 |
| Esp3I | CGTCTC | 2 cut(s) | 169, 262 |
| FaeI | CATG | 3 cut(s) | 548, 655, 767 |
| FaiI | YATR | 5 cut(s) | 546, 575, 653, 687, 765 |
| FaqI | GGGAC | 2 cut(s) | 259, 445 |
| FatI | CATG | 3 cut(s) | 544, 651, 763 |
| FauI | CCCGC | 1 cut(s) | 409 |
| FblI | GTMKAC | 3 cut(s) | 19, 52, 192 |
| Fnu4HI | GCNGC | 2 cut(s) | 744, 747 |
| FokI | GGATG | 2 cut(s) | 526, 764 |
| Fsp4HI | GCNGC | 2 cut(s) | 744, 747 |
| FspBI | CTAG | 1 cut(s) | 456 |
| GlaI | GCGC | 1 cut(s) | 286 |
| GluI | GCNGC | 2 cut(s) | 744, 747 |
| GsaI | CCCAGC | 1 cut(s) | 512 |
| GsuI | CTGGAG | 3 cut(s) | 53, 151, 483 |
| HaeIII | GGCC | 2 cut(s) | 293, 308 |
| HapII | CCGG | 4 cut(s) | 134, 277, 521, 815 |
| HgaI | GACGC | 3 cut(s) | 151, 178, 203 |
| HhaI | GCGC | 1 cut(s) | 287 |
| Hin1I | GRCGYC | 2 cut(s) | 195, 255 |
| Hin1II | CATG | 3 cut(s) | 548, 655, 767 |
| Hin6I | GCGC | 1 cut(s) | 285 |
| HinP1I | GCGC | 1 cut(s) | 285 |
| HincII | GTYRAC | 1 cut(s) | 193 |
| HindII | GTYRAC | 1 cut(s) | 193 |
| HindIII | AAGCTT | 1 cut(s) | 215 |
| HinfI | GANTC | 9 cut(s) | 13, 100, 146, 235, 296, 362, 598, 676, 716 |
| HpaII | CCGG | 4 cut(s) | 134, 277, 521, 815 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 5 cut(s) | 20, 53, 123, 185, 193 |
| Hpy188I | TCNGA | 5 cut(s) | 12, 78, 249, 301, 328 |
| Hpy188III | TCNNGA | 5 cut(s) | 232, 239, 366, 481, 545 |
| Hpy8I | GTNNAC | 5 cut(s) | 20, 53, 123, 185, 193 |
| Hpy99I | CGWCG | 3 cut(s) | 194, 197, 257 |
| HpyAV | CCTTC | 1 cut(s) | 259 |
| HpyCH4III | ACNGT | 2 cut(s) | 34, 534 |
| HpyCH4IV | ACGT | 1 cut(s) | 255 |
| HpyCH4V | TGCA | 5 cut(s) | 335, 529, 655, 763, 775 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 114, 341, 526, 743 |
| HpyF3I | CTNAG | 5 cut(s) | 11, 179, 213, 564, 861 |
| HpySE526I | ACGT | 1 cut(s) | 255 |
| Hsp92I | GRCGYC | 2 cut(s) | 195, 255 |
| Hsp92II | CATG | 3 cut(s) | 548, 655, 767 |
| HspAI | GCGC | 1 cut(s) | 285 |
| Kzo9I | GATC | 4 cut(s) | 7, 249, 382, 547 |
| LmnI | GCTCC | 5 cut(s) | 72, 79, 234, 517, 802 |
| Lsp1109I | GCAGC | 2 cut(s) | 730, 733 |
| MaeI | CTAG | 1 cut(s) | 456 |
| MaeII | ACGT | 1 cut(s) | 255 |
| MalI | GATC | 4 cut(s) | 9, 251, 384, 549 |
| MboI | GATC | 4 cut(s) | 7, 249, 382, 547 |
| MboII | GAAGA | 6 cut(s) | 155, 639, 677, 682, 685, 800 |
| MflI | RGATCY | 1 cut(s) | 7 |
| MluCI | AATT | 1 cut(s) | 641 |
| MluI | ACGCGT | 1 cut(s) | 187 |
| MlyI | GAGTC | 5 cut(s) | 22, 290, 371, 607, 710 |
| MmeI | TCCRAC | 1 cut(s) | 101 |
| MseI | TTAA | 1 cut(s) | 158 |
| MspA1I | CMGCKG | 1 cut(s) | 508 |
| MspI | CCGG | 4 cut(s) | 134, 277, 521, 815 |
| MspR9I | CCNGG | 3 cut(s) | 71, 277, 310 |
| MvaI | CCWGG | 2 cut(s) | 71, 310 |
| MvnI | CGCG | 1 cut(s) | 189 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 114, 341, 526, 743 |
| NciI | CCSGG | 1 cut(s) | 277 |
| NdeII | GATC | 4 cut(s) | 7, 249, 382, 547 |
| NlaIII | CATG | 3 cut(s) | 548, 655, 767 |
| NlaIV | GGNNCC | 5 cut(s) | 75, 230, 275, 519, 798 |
| PagI | TCATGA | 1 cut(s) | 544 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 266 |
| PfeI | GAWTC | 4 cut(s) | 100, 146, 235, 676 |
| PkrI | GCNGC | 2 cut(s) | 745, 748 |
| PleI | GAGTC | 5 cut(s) | 21, 290, 370, 606, 710 |
| PpsI | GAGTC | 5 cut(s) | 21, 290, 370, 606, 710 |
| PpuMI | RGGWCCY | 1 cut(s) | 273 |
| Psp5II | RGGWCCY | 1 cut(s) | 273 |
| Psp6I | CCWGG | 2 cut(s) | 69, 308 |
| PspFI | CCCAGC | 1 cut(s) | 508 |
| PspGI | CCWGG | 2 cut(s) | 69, 308 |
| PspN4I | GGNNCC | 5 cut(s) | 75, 230, 275, 519, 798 |
| PspPI | GGNCC | 2 cut(s) | 273, 523 |
| PspPPI | RGGWCCY | 1 cut(s) | 273 |
| PsuI | RGATCY | 1 cut(s) | 7 |
| PvuII | CAGCTG | 1 cut(s) | 508 |
| RsaI | GTAC | 3 cut(s) | 44, 314, 379 |
| RsaNI | GTAC | 3 cut(s) | 43, 313, 378 |
| SalI | GTCGAC | 1 cut(s) | 191 |
| SaqAI | TTAA | 1 cut(s) | 158 |
| SatI | GCNGC | 2 cut(s) | 744, 747 |
| Sau3AI | GATC | 4 cut(s) | 7, 249, 382, 547 |
| Sau96I | GGNCC | 2 cut(s) | 273, 523 |
| SchI | GAGTC | 5 cut(s) | 22, 290, 371, 607, 710 |
| ScrFI | CCNGG | 3 cut(s) | 71, 277, 310 |
| SfcI | CTRYAG | 1 cut(s) | 738 |
| SgrDI | CGTCGACG | 1 cut(s) | 191 |
| SinI | GGWCC | 2 cut(s) | 273, 523 |
| SmlI | CTYRAG | 2 cut(s) | 218, 481 |
| SmoI | CTYRAG | 2 cut(s) | 218, 481 |
| Sse9I | AATT | 1 cut(s) | 641 |
| SsiI | CCGC | 2 cut(s) | 416, 749 |
| SspI | AATATT | 1 cut(s) | 631 |
| SspMI | CTAG | 1 cut(s) | 456 |
| StyD4I | CCNGG | 3 cut(s) | 69, 275, 308 |
| TaaI | ACNGT | 2 cut(s) | 34, 534 |
| TaiI | ACGT | 1 cut(s) | 258 |
| TaqI | TCGA | 4 cut(s) | 98, 192, 252, 581 |
| TasI | AATT | 1 cut(s) | 641 |
| TfiI | GAWTC | 4 cut(s) | 100, 146, 235, 676 |
| Tru1I | TTAA | 1 cut(s) | 158 |
| Tru9I | TTAA | 1 cut(s) | 158 |
| TscAI | CASTG | 3 cut(s) | 135, 342, 478 |
| TseI | GCWGC | 2 cut(s) | 743, 746 |
| TspDTI | ATGAA | 1 cut(s) | 156 |
| TspGWI | ACGGA | 1 cut(s) | 454 |
| TspRI | CASTG | 3 cut(s) | 135, 342, 478 |
| VpaK11BI | GGWCC | 2 cut(s) | 273, 523 |
| XapI | RAATTY | 1 cut(s) | 641 |
| XmiI | GTMKAC | 3 cut(s) | 19, 52, 192 |
| XspI | CTAG | 1 cut(s) | 456 |
| ZraI | GACGTC | 1 cut(s) | 256 |