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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 160 |
| AccBSI | CCGCTC | 1 cut(s) | 148 |
| AccI | GTMKAC | 1 cut(s) | 253 |
| AccII | CGCG | 1 cut(s) | 89 |
| AciI | CCGC | 4 cut(s) | 87, 89, 146, 290 |
| AclI | AACGTT | 1 cut(s) | 226 |
| AcoI | YGGCCR | 1 cut(s) | 93 |
| AfaI | GTAC | 1 cut(s) | 274 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 289 |
| AgsI | TTSAA | 1 cut(s) | 280 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 89, 121 |
| AluBI | AGCT | 2 cut(s) | 313, 347 |
| AluI | AGCT | 2 cut(s) | 313, 347 |
| Alw21I | GWGCWC | 1 cut(s) | 315 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 3 cut(s) | 83, 293, 347 |
| AsuHPI | GGTGA | 2 cut(s) | 43, 340 |
| BalI | TGGCCA | 1 cut(s) | 95 |
| BanII | GRGCYC | 1 cut(s) | 315 |
| Bbv12I | GWGCWC | 1 cut(s) | 315 |
| BbvI | GCAGC | 3 cut(s) | 95, 305, 334 |
| BccI | CCATC | 3 cut(s) | 22, 181, 292 |
| BceAI | ACGGC | 1 cut(s) | 303 |
| BfaI | CTAG | 1 cut(s) | 200 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 5 cut(s) | 84, 87, 291, 294, 348 |
| BlsI | GCNGC | 5 cut(s) | 85, 88, 292, 295, 349 |
| BmiI | GGNNCC | 1 cut(s) | 144 |
| BmsI | GCATC | 1 cut(s) | 325 |
| Bpu10I | CCTNAGC | 2 cut(s) | 6, 149 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| BsaJI | CCNNGG | 1 cut(s) | 87 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 289 |
| Bse1I | ACTGG | 1 cut(s) | 171 |
| BseDI | CCNNGG | 1 cut(s) | 87 |
| BseGI | GGATG | 2 cut(s) | 264, 340 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BseMII | CTCAG | 1 cut(s) | 163 |
| BseNI | ACTGG | 1 cut(s) | 171 |
| BseXI | GCAGC | 3 cut(s) | 95, 305, 334 |
| Bsh1236I | CGCG | 1 cut(s) | 89 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKAI | GWGCWC | 1 cut(s) | 315 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 1 cut(s) | 315 |
| BspACI | CCGC | 4 cut(s) | 87, 89, 146, 290 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 162 |
| BspFNI | CGCG | 1 cut(s) | 89 |
| BspLI | GGNNCC | 1 cut(s) | 144 |
| BsrBI | CCGCTC | 1 cut(s) | 148 |
| BsrI | ACTGG | 1 cut(s) | 171 |
| BssECI | CCNNGG | 1 cut(s) | 87 |
| BstDEI | CTNAG | 2 cut(s) | 6, 149 |
| BstDSI | CCRYGG | 1 cut(s) | 87 |
| BstF5I | GGATG | 2 cut(s) | 264, 340 |
| BstFNI | CGCG | 1 cut(s) | 89 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 344 |
| BstUI | CGCG | 1 cut(s) | 89 |
| BstV1I | GCAGC | 3 cut(s) | 95, 305, 334 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 87 |
| BtgZI | GCGATG | 1 cut(s) | 311 |
| BtsCI | GGATG | 2 cut(s) | 264, 340 |
| BtsIMutI | CAGTG | 1 cut(s) | 164 |
| Cfr42I | CCGCGG | 1 cut(s) | 90 |
| Csp6I | GTAC | 1 cut(s) | 273 |
| CviAII | CATG | 2 cut(s) | 232, 267 |
| CviJI | RGCY | 7 cut(s) | 5, 11, 56, 86, 95, 313, 347 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 11, 56, 86, 95, 313, 347 |
| CviQI | GTAC | 1 cut(s) | 273 |
| DdeI | CTNAG | 2 cut(s) | 6, 149 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 160 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 160 |
| EaeI | YGGCCR | 1 cut(s) | 93 |
| Ecl136II | GAGCTC | 1 cut(s) | 313 |
| Eco24I | GRGCYC | 1 cut(s) | 315 |
| Eco32I | GATATC | 1 cut(s) | 247 |
| Eco53kI | GAGCTC | 1 cut(s) | 313 |
| EcoICRI | GAGCTC | 1 cut(s) | 313 |
| EcoRV | GATATC | 1 cut(s) | 247 |
| EcoT38I | GRGCYC | 1 cut(s) | 315 |
| FaeI | CATG | 2 cut(s) | 235, 270 |
| FaiI | YATR | 7 cut(s) | 14, 111, 113, 117, 233, 268, 321 |
| FatI | CATG | 2 cut(s) | 231, 266 |
| FblI | GTMKAC | 1 cut(s) | 253 |
| Fnu4HI | GCNGC | 5 cut(s) | 84, 87, 291, 294, 348 |
| FokI | GGATG | 2 cut(s) | 271, 347 |
| FriOI | GRGCYC | 1 cut(s) | 315 |
| Fsp4HI | GCNGC | 5 cut(s) | 84, 87, 291, 294, 348 |
| FspBI | CTAG | 1 cut(s) | 200 |
| GluI | GCNGC | 5 cut(s) | 84, 87, 291, 294, 348 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 2 cut(s) | 235, 270 |
| HincII | GTYRAC | 2 cut(s) | 45, 254 |
| HindII | GTYRAC | 2 cut(s) | 45, 254 |
| HinfI | GANTC | 2 cut(s) | 137, 180 |
| HpaI | GTTAAC | 1 cut(s) | 45 |
| HphI | GGTGA | 2 cut(s) | 43, 340 |
| Hpy166II | GTNNAC | 2 cut(s) | 45, 254 |
| Hpy188I | TCNGA | 1 cut(s) | 179 |
| Hpy188III | TCNNGA | 3 cut(s) | 134, 151, 184 |
| Hpy8I | GTNNAC | 2 cut(s) | 45, 254 |
| Hpy99I | CGWCG | 2 cut(s) | 255, 258 |
| HpyAV | CCTTC | 1 cut(s) | 325 |
| HpyCH4IV | ACGT | 1 cut(s) | 226 |
| HpyCH4V | TGCA | 1 cut(s) | 210 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 344 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 149 |
| HpySE526I | ACGT | 1 cut(s) | 226 |
| Hsp92II | CATG | 2 cut(s) | 235, 270 |
| KspAI | GTTAAC | 1 cut(s) | 45 |
| KspI | CCGCGG | 1 cut(s) | 90 |
| LmnI | GCTCC | 3 cut(s) | 80, 310, 318 |
| LpnPI | CCDG | 3 cut(s) | 136, 147, 152 |
| Lsp1109I | GCAGC | 3 cut(s) | 95, 305, 334 |
| LweI | GCATC | 1 cut(s) | 325 |
| MaeI | CTAG | 1 cut(s) | 200 |
| MaeII | ACGT | 1 cut(s) | 226 |
| MaeIII | GTNAC | 2 cut(s) | 31, 162 |
| MbiI | CCGCTC | 1 cut(s) | 148 |
| MboII | GAAGA | 2 cut(s) | 94, 97 |
| MhlI | GDGCHC | 1 cut(s) | 315 |
| MlsI | TGGCCA | 1 cut(s) | 95 |
| MluNI | TGGCCA | 1 cut(s) | 95 |
| MlyI | GAGTC | 1 cut(s) | 146 |
| MmeI | TCCRAC | 1 cut(s) | 222 |
| MnlI | CCTC | 5 cut(s) | 46, 224, 255, 293, 298 |
| Mox20I | TGGCCA | 1 cut(s) | 95 |
| MscI | TGGCCA | 1 cut(s) | 95 |
| MseI | TTAA | 1 cut(s) | 44 |
| Msp20I | TGGCCA | 1 cut(s) | 95 |
| MspA1I | CMGCKG | 1 cut(s) | 89 |
| MvnI | CGCG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 344 |
| NlaIII | CATG | 2 cut(s) | 235, 270 |
| NlaIV | GGNNCC | 1 cut(s) | 144 |
| NmuCI | GTSAC | 2 cut(s) | 31, 162 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 293 |
| PfeI | GAWTC | 1 cut(s) | 180 |
| PkrI | GCNGC | 5 cut(s) | 85, 88, 292, 295, 349 |
| PleI | GAGTC | 1 cut(s) | 145 |
| PpsI | GAGTC | 1 cut(s) | 145 |
| Psp124BI | GAGCTC | 1 cut(s) | 315 |
| Psp1406I | AACGTT | 1 cut(s) | 226 |
| PspN4I | GGNNCC | 1 cut(s) | 144 |
| RsaI | GTAC | 1 cut(s) | 274 |
| RsaNI | GTAC | 1 cut(s) | 273 |
| SacI | GAGCTC | 1 cut(s) | 315 |
| SacII | CCGCGG | 1 cut(s) | 90 |
| SalI | GTCGAC | 1 cut(s) | 252 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| SatI | GCNGC | 5 cut(s) | 84, 87, 291, 294, 348 |
| SchI | GAGTC | 1 cut(s) | 146 |
| SduI | GDGCHC | 1 cut(s) | 315 |
| SetI | ASST | 7 cut(s) | 216, 229, 285, 309, 315, 330, 349 |
| SfaNI | GCATC | 1 cut(s) | 325 |
| Sfr303I | CCGCGG | 1 cut(s) | 90 |
| SgrBI | CCGCGG | 1 cut(s) | 90 |
| SgrDI | CGTCGACG | 1 cut(s) | 252 |
| SmlI | CTYRAG | 1 cut(s) | 218 |
| SmoI | CTYRAG | 1 cut(s) | 218 |
| SsiI | CCGC | 4 cut(s) | 87, 89, 146, 290 |
| SspMI | CTAG | 1 cut(s) | 200 |
| SstI | GAGCTC | 1 cut(s) | 315 |
| TaiI | ACGT | 1 cut(s) | 229 |
| TaqI | TCGA | 3 cut(s) | 22, 185, 253 |
| TauI | GCSGC | 2 cut(s) | 89, 293 |
| TfiI | GAWTC | 1 cut(s) | 180 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TscAI | CASTG | 1 cut(s) | 171 |
| TseFI | GTSAC | 2 cut(s) | 31, 162 |
| TseI | GCWGC | 3 cut(s) | 83, 293, 347 |
| Tsp45I | GTSAC | 2 cut(s) | 31, 162 |
| TspDTI | ATGAA | 2 cut(s) | 220, 336 |
| TspGWI | ACGGA | 2 cut(s) | 239, 271 |
| TspRI | CASTG | 1 cut(s) | 171 |
| XmiI | GTMKAC | 1 cut(s) | 253 |
| XspI | CTAG | 1 cut(s) | 200 |