Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 627 |
| AciI | CCGC | 3 cut(s) | 50, 196, 700 |
| AclWI | GGATC | 1 cut(s) | 716 |
| AcoI | YGGCCR | 3 cut(s) | 394, 565, 576 |
| AcsI | RAATTY | 1 cut(s) | 445 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 403, 574 |
| AjnI | CCWGG | 1 cut(s) | 595 |
| AluBI | AGCT | 3 cut(s) | 170, 432, 587 |
| AluI | AGCT | 3 cut(s) | 170, 432, 587 |
| Alw26I | GTCTC | 2 cut(s) | 59, 354 |
| AlwI | GGATC | 1 cut(s) | 716 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 199, 332 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 3 cut(s) | 394, 565, 576 |
| ApeKI | GCWGC | 5 cut(s) | 193, 317, 437, 530, 617 |
| ApoI | RAATTY | 1 cut(s) | 445 |
| AsuC2I | CCSGG | 1 cut(s) | 155 |
| AsuHPI | GGTGA | 4 cut(s) | 49, 91, 372, 674 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AxyI | CCTNAGG | 1 cut(s) | 358 |
| BalI | TGGCCA | 1 cut(s) | 578 |
| BamHI | GGATCC | 1 cut(s) | 721 |
| BanI | GGYRCC | 1 cut(s) | 627 |
| BanII | GRGCYC | 1 cut(s) | 645 |
| BbsI | GAAGAC | 1 cut(s) | 80 |
| BbvI | GCAGC | 5 cut(s) | 205, 304, 424, 517, 604 |
| BccI | CCATC | 4 cut(s) | 17, 379, 452, 461 |
| BceAI | ACGGC | 3 cut(s) | 129, 552, 680 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 403, 437 |
| BciT130I | CCWGG | 1 cut(s) | 597 |
| BcnI | CCSGG | 1 cut(s) | 155 |
| BcoDI | GTCTC | 2 cut(s) | 59, 354 |
| BisI | GCNGC | 7 cut(s) | 50, 194, 197, 318, 438, 531, 618 |
| BlsI | GCNGC | 7 cut(s) | 51, 195, 198, 319, 439, 532, 619 |
| Bme1390I | CCNGG | 2 cut(s) | 155, 597 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 3 cut(s) | 610, 629, 723 |
| BmrFI | CCNGG | 2 cut(s) | 155, 597 |
| BmrI | ACTGGG | 1 cut(s) | 524 |
| BmsI | GCATC | 3 cut(s) | 256, 411, 646 |
| BmuI | ACTGGG | 1 cut(s) | 524 |
| BpiI | GAAGAC | 1 cut(s) | 80 |
| BpuMI | CCSGG | 1 cut(s) | 155 |
| Bsa29I | ATCGAT | 1 cut(s) | 489 |
| BsaJI | CCNNGG | 2 cut(s) | 425, 541 |
| BsaWI | WCCGGW | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 403, 574 |
| Bse118I | RCCGGY | 1 cut(s) | 659 |
| Bse1I | ACTGG | 4 cut(s) | 326, 422, 519, 679 |
| Bse21I | CCTNAGG | 1 cut(s) | 358 |
| Bse3DI | GCAATG | 1 cut(s) | 612 |
| BseBI | CCWGG | 1 cut(s) | 597 |
| BseCI | ATCGAT | 1 cut(s) | 489 |
| BseDI | CCNNGG | 2 cut(s) | 425, 541 |
| BseGI | GGATG | 3 cut(s) | 258, 426, 472 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 403, 574 |
| BseMI | GCAATG | 1 cut(s) | 612 |
| BseMII | CTCAG | 1 cut(s) | 372 |
| BseNI | ACTGG | 4 cut(s) | 326, 422, 519, 679 |
| BseRI | GAGGAG | 2 cut(s) | 200, 203 |
| BseXI | GCAGC | 5 cut(s) | 205, 304, 424, 517, 604 |
| BseYI | CCCAGC | 1 cut(s) | 341 |
| BsgI | GTGCAG | 1 cut(s) | 423 |
| BshFI | GGCC | 3 cut(s) | 396, 567, 578 |
| BshNI | GGYRCC | 1 cut(s) | 627 |
| BshVI | ATCGAT | 1 cut(s) | 489 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 3 cut(s) | 35, 154, 660 |
| BslFI | GGGAC | 1 cut(s) | 257 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 403, 574 |
| BsmAI | GTCTC | 2 cut(s) | 59, 354 |
| BsmFI | GGGAC | 1 cut(s) | 257 |
| BsnI | GGCC | 3 cut(s) | 396, 567, 578 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 645 |
| Bsp143I | GATC | 4 cut(s) | 160, 483, 635, 721 |
| Bsp19I | CCATGG | 1 cut(s) | 541 |
| BspACI | CCGC | 3 cut(s) | 50, 196, 700 |
| BspANI | GGCC | 3 cut(s) | 396, 567, 578 |
| BspCNI | CTCAG | 1 cut(s) | 371 |
| BspDI | ATCGAT | 1 cut(s) | 489 |
| BspLI | GGNNCC | 3 cut(s) | 610, 629, 723 |
| BspPI | GGATC | 1 cut(s) | 716 |
| BspT107I | GGYRCC | 1 cut(s) | 627 |
| BsrDI | GCAATG | 1 cut(s) | 612 |
| BsrFI | RCCGGY | 1 cut(s) | 659 |
| BsrI | ACTGG | 4 cut(s) | 326, 422, 519, 679 |
| BssAI | RCCGGY | 1 cut(s) | 659 |
| BssECI | CCNNGG | 2 cut(s) | 425, 541 |
| BssMI | GATC | 4 cut(s) | 160, 483, 635, 721 |
| BssT1I | CCWWGG | 2 cut(s) | 425, 541 |
| Bst2UI | CCWGG | 1 cut(s) | 597 |
| Bst4CI | ACNGT | 2 cut(s) | 151, 248 |
| BstC8I | GCNNGC | 1 cut(s) | 565 |
| BstDEI | CTNAG | 3 cut(s) | 358, 632, 726 |
| BstDSI | CCRYGG | 1 cut(s) | 541 |
| BstF5I | GGATG | 3 cut(s) | 258, 426, 472 |
| BstKTI | GATC | 4 cut(s) | 163, 486, 638, 724 |
| BstMAI | GTCTC | 2 cut(s) | 59, 354 |
| BstMBI | GATC | 4 cut(s) | 160, 483, 635, 721 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 584 |
| BstNI | CCWGG | 1 cut(s) | 597 |
| BstSCI | CCNGG | 2 cut(s) | 153, 595 |
| BstV1I | GCAGC | 5 cut(s) | 205, 304, 424, 517, 604 |
| BstV2I | GAAGAC | 1 cut(s) | 80 |
| BstX2I | RGATCY | 1 cut(s) | 721 |
| BstYI | RGATCY | 1 cut(s) | 721 |
| Bsu15I | ATCGAT | 1 cut(s) | 489 |
| Bsu36I | CCTNAGG | 1 cut(s) | 358 |
| BsuRI | GGCC | 3 cut(s) | 396, 567, 578 |
| BsuTUI | ATCGAT | 1 cut(s) | 489 |
| BtgI | CCRYGG | 1 cut(s) | 541 |
| BtsCI | GGATG | 3 cut(s) | 258, 426, 472 |
| BtsIMutI | CAGTG | 2 cut(s) | 333, 512 |
| Cac8I | GCNNGC | 1 cut(s) | 565 |
| CaiI | CAGNNNCTG | 2 cut(s) | 199, 332 |
| Cfr10I | RCCGGY | 1 cut(s) | 659 |
| ClaI | ATCGAT | 1 cut(s) | 489 |
| CseI | GACGC | 1 cut(s) | 123 |
| CviAII | CATG | 3 cut(s) | 263, 542, 716 |
| DdeI | CTNAG | 3 cut(s) | 358, 632, 726 |
| DpnI | GATC | 4 cut(s) | 162, 485, 637, 723 |
| DpnII | GATC | 4 cut(s) | 160, 483, 635, 721 |
| DraI | TTTAAA | 1 cut(s) | 604 |
| EaeI | YGGCCR | 3 cut(s) | 394, 565, 576 |
| Eco130I | CCWWGG | 2 cut(s) | 425, 541 |
| Eco24I | GRGCYC | 1 cut(s) | 645 |
| Eco81I | CCTNAGG | 1 cut(s) | 358 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRII | CCWGG | 1 cut(s) | 595 |
| EcoT14I | CCWWGG | 2 cut(s) | 425, 541 |
| EcoT38I | GRGCYC | 1 cut(s) | 645 |
| ErhI | CCWWGG | 2 cut(s) | 425, 541 |
| FaeI | CATG | 3 cut(s) | 266, 545, 719 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 576, 608 |
| FaqI | GGGAC | 1 cut(s) | 257 |
| FatI | CATG | 3 cut(s) | 262, 541, 715 |
| Fnu4HI | GCNGC | 7 cut(s) | 50, 194, 197, 318, 438, 531, 618 |
| FokI | GGATG | 3 cut(s) | 245, 433, 479 |
| FriOI | GRGCYC | 1 cut(s) | 645 |
| Fsp4HI | GCNGC | 7 cut(s) | 50, 194, 197, 318, 438, 531, 618 |
| GluI | GCNGC | 7 cut(s) | 50, 194, 197, 318, 438, 531, 618 |
| GsaI | CCCAGC | 1 cut(s) | 345 |
| HaeIII | GGCC | 3 cut(s) | 396, 567, 578 |
| HapII | CCGG | 3 cut(s) | 35, 154, 660 |
| HgaI | GACGC | 1 cut(s) | 123 |
| Hin1II | CATG | 3 cut(s) | 266, 545, 719 |
| HincII | GTYRAC | 1 cut(s) | 147 |
| HindII | GTYRAC | 1 cut(s) | 147 |
| HinfI | GANTC | 3 cut(s) | 27, 497, 703 |
| HpaI | GTTAAC | 1 cut(s) | 147 |
| HpaII | CCGG | 3 cut(s) | 35, 154, 660 |
| HphI | GGTGA | 4 cut(s) | 49, 91, 372, 674 |
| Hpy166II | GTNNAC | 2 cut(s) | 147, 380 |
| Hpy188I | TCNGA | 2 cut(s) | 165, 367 |
| Hpy188III | TCNNGA | 1 cut(s) | 242 |
| Hpy8I | GTNNAC | 2 cut(s) | 147, 380 |
| Hpy99I | CGWCG | 1 cut(s) | 484 |
| HpyAV | CCTTC | 5 cut(s) | 34, 76, 217, 220, 295 |
| HpyCH4III | ACNGT | 2 cut(s) | 151, 248 |
| HpyCH4IV | ACGT | 2 cut(s) | 479, 536 |
| HpyCH4V | TGCA | 2 cut(s) | 440, 715 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 584 |
| HpyF3I | CTNAG | 3 cut(s) | 358, 632, 726 |
| HpySE526I | ACGT | 2 cut(s) | 479, 536 |
| Hsp92II | CATG | 3 cut(s) | 266, 545, 719 |
| KspAI | GTTAAC | 1 cut(s) | 147 |
| Kzo9I | GATC | 4 cut(s) | 160, 483, 635, 721 |
| LmnI | GCTCC | 5 cut(s) | 14, 131, 190, 325, 429 |
| Lsp1109I | GCAGC | 5 cut(s) | 205, 304, 424, 517, 604 |
| LweI | GCATC | 3 cut(s) | 256, 411, 646 |
| MaeII | ACGT | 2 cut(s) | 479, 536 |
| MaeIII | GTNAC | 1 cut(s) | 508 |
| MalI | GATC | 4 cut(s) | 162, 485, 637, 723 |
| MboI | GATC | 4 cut(s) | 160, 483, 635, 721 |
| MboII | GAAGA | 1 cut(s) | 80 |
| MflI | RGATCY | 1 cut(s) | 721 |
| MhlI | GDGCHC | 1 cut(s) | 645 |
| MlsI | TGGCCA | 1 cut(s) | 578 |
| MluCI | AATT | 2 cut(s) | 203, 445 |
| MluNI | TGGCCA | 1 cut(s) | 578 |
| MlyI | GAGTC | 1 cut(s) | 491 |
| MmeI | TCCRAC | 1 cut(s) | 384 |
| MnlI | CCTC | 5 cut(s) | 178, 181, 361, 367, 514 |
| Mox20I | TGGCCA | 1 cut(s) | 578 |
| MscI | TGGCCA | 1 cut(s) | 578 |
| MseI | TTAA | 5 cut(s) | 108, 146, 174, 228, 603 |
| Msp20I | TGGCCA | 1 cut(s) | 578 |
| MspA1I | CMGCKG | 2 cut(s) | 52, 196 |
| MspI | CCGG | 3 cut(s) | 35, 154, 660 |
| MspR9I | CCNGG | 2 cut(s) | 155, 597 |
| MvaI | CCWGG | 1 cut(s) | 597 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 584 |
| NciI | CCSGG | 1 cut(s) | 155 |
| NcoI | CCATGG | 1 cut(s) | 541 |
| NdeII | GATC | 4 cut(s) | 160, 483, 635, 721 |
| NlaIII | CATG | 3 cut(s) | 266, 545, 719 |
| NlaIV | GGNNCC | 3 cut(s) | 610, 629, 723 |
| NmeAIII | GCCGAG | 1 cut(s) | 422 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PfeI | GAWTC | 2 cut(s) | 27, 703 |
| PfoI | TCCNGGA | 1 cut(s) | 595 |
| PkrI | GCNGC | 7 cut(s) | 51, 195, 198, 319, 439, 532, 619 |
| PleI | GAGTC | 1 cut(s) | 491 |
| PpsI | GAGTC | 1 cut(s) | 491 |
| Psp6I | CCWGG | 1 cut(s) | 595 |
| PspFI | CCCAGC | 1 cut(s) | 341 |
| PspGI | CCWGG | 1 cut(s) | 595 |
| PspN4I | GGNNCC | 3 cut(s) | 610, 629, 723 |
| PspXI | VCTCGAGB | 1 cut(s) | 119 |
| PstNI | CAGNNNCTG | 2 cut(s) | 199, 332 |
| PsuI | RGATCY | 1 cut(s) | 721 |
| SaqAI | TTAA | 5 cut(s) | 108, 146, 174, 228, 603 |
| SatI | GCNGC | 7 cut(s) | 50, 194, 197, 318, 438, 531, 618 |
| Sau3AI | GATC | 4 cut(s) | 160, 483, 635, 721 |
| SchI | GAGTC | 1 cut(s) | 491 |
| ScrFI | CCNGG | 2 cut(s) | 155, 597 |
| SduI | GDGCHC | 1 cut(s) | 645 |
| SfaNI | GCATC | 3 cut(s) | 256, 411, 646 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmlI | CTYRAG | 1 cut(s) | 119 |
| SmoI | CTYRAG | 1 cut(s) | 119 |
| Sse9I | AATT | 2 cut(s) | 203, 445 |
| SsiI | CCGC | 3 cut(s) | 50, 196, 700 |
| StyD4I | CCNGG | 2 cut(s) | 153, 595 |
| StyI | CCWWGG | 2 cut(s) | 425, 541 |
| TaaI | ACNGT | 2 cut(s) | 151, 248 |
| TaiI | ACGT | 2 cut(s) | 482, 539 |
| TaqI | TCGA | 3 cut(s) | 120, 482, 489 |
| TasI | AATT | 2 cut(s) | 203, 445 |
| TauI | GCSGC | 2 cut(s) | 52, 199 |
| TfiI | GAWTC | 2 cut(s) | 27, 703 |
| Tru1I | TTAA | 5 cut(s) | 108, 146, 174, 228, 603 |
| Tru9I | TTAA | 5 cut(s) | 108, 146, 174, 228, 603 |
| TscAI | CASTG | 2 cut(s) | 333, 519 |
| TseI | GCWGC | 5 cut(s) | 193, 317, 437, 530, 617 |
| TspDTI | ATGAA | 4 cut(s) | 202, 247, 308, 362 |
| TspGWI | ACGGA | 1 cut(s) | 509 |
| TspRI | CASTG | 2 cut(s) | 333, 519 |
| XapI | RAATTY | 1 cut(s) | 445 |
| XhoI | CTCGAG | 1 cut(s) | 119 |