Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 341 |
| AccII | CGCG | 1 cut(s) | 58 |
| AciI | CCGC | 1 cut(s) | 150 |
| AclWI | GGATC | 2 cut(s) | 367, 380 |
| AcoI | YGGCCR | 1 cut(s) | 316 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 303, 355 |
| AgsI | TTSAA | 1 cut(s) | 116 |
| AjnI | CCWGG | 1 cut(s) | 81 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 357, 389 |
| AluBI | AGCT | 1 cut(s) | 411 |
| AluI | AGCT | 1 cut(s) | 411 |
| Alw26I | GTCTC | 3 cut(s) | 77, 183, 233 |
| AlwI | GGATC | 2 cut(s) | 367, 380 |
| AoxI | GGCC | 2 cut(s) | 152, 316 |
| ApeKI | GCWGC | 1 cut(s) | 287 |
| AspLEI | GCGC | 1 cut(s) | 58 |
| AspS9I | GGNCC | 2 cut(s) | 152, 403 |
| AsuHPI | GGTGA | 2 cut(s) | 265, 394 |
| AvaII | GGWCC | 1 cut(s) | 403 |
| BalI | TGGCCA | 1 cut(s) | 318 |
| BamHI | GGATCC | 1 cut(s) | 372 |
| BanII | GRGCYC | 1 cut(s) | 142 |
| BbvI | GCAGC | 1 cut(s) | 299 |
| BccI | CCATC | 3 cut(s) | 191, 345, 379 |
| BceAI | ACGGC | 1 cut(s) | 139 |
| BciT130I | CCWGG | 1 cut(s) | 83 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BcoDI | GTCTC | 3 cut(s) | 77, 183, 233 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BfmI | CTRYAG | 1 cut(s) | 435 |
| BglII | AGATCT | 1 cut(s) | 450 |
| BisI | GCNGC | 1 cut(s) | 288 |
| BlsI | GCNGC | 1 cut(s) | 289 |
| Bme1390I | CCNGG | 1 cut(s) | 83 |
| Bme18I | GGWCC | 1 cut(s) | 403 |
| BmgT120I | GGNCC | 2 cut(s) | 152, 403 |
| BmiI | GGNNCC | 2 cut(s) | 374, 404 |
| BmrFI | CCNGG | 1 cut(s) | 83 |
| BmsI | GCATC | 1 cut(s) | 4 |
| BsaI | GGTCTC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 1 cut(s) | 155 |
| BsaWI | WCCGGW | 1 cut(s) | 68 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 45, 75 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 303, 355 |
| Bse1I | ACTGG | 2 cut(s) | 266, 462 |
| BseBI | CCWGG | 1 cut(s) | 83 |
| BseDI | CCNNGG | 1 cut(s) | 155 |
| BseGI | GGATG | 4 cut(s) | 19, 91, 394, 420 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 303, 355 |
| BseMII | CTCAG | 1 cut(s) | 438 |
| BseNI | ACTGG | 2 cut(s) | 266, 462 |
| BseRI | GAGGAG | 1 cut(s) | 374 |
| BseXI | GCAGC | 1 cut(s) | 299 |
| Bsh1236I | CGCG | 1 cut(s) | 58 |
| BshFI | GGCC | 2 cut(s) | 154, 318 |
| BsiSI | CCGG | 2 cut(s) | 69, 376 |
| BslFI | GGGAC | 1 cut(s) | 273 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 303, 355 |
| BsmAI | GTCTC | 3 cut(s) | 77, 183, 233 |
| BsmFI | GGGAC | 1 cut(s) | 273 |
| BsnI | GGCC | 2 cut(s) | 154, 318 |
| Bso31I | GGTCTC | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 1 cut(s) | 142 |
| Bsp143I | GATC | 4 cut(s) | 127, 334, 372, 450 |
| BspACI | CCGC | 1 cut(s) | 150 |
| BspANI | GGCC | 2 cut(s) | 154, 318 |
| BspCNI | CTCAG | 1 cut(s) | 439 |
| BspFNI | CGCG | 1 cut(s) | 58 |
| BspLI | GGNNCC | 2 cut(s) | 374, 404 |
| BspPI | GGATC | 2 cut(s) | 367, 380 |
| BspQI | GCTCTTC | 1 cut(s) | 147 |
| BspTNI | GGTCTC | 1 cut(s) | 77 |
| BsrI | ACTGG | 2 cut(s) | 266, 462 |
| BssECI | CCNNGG | 1 cut(s) | 155 |
| BssMI | GATC | 4 cut(s) | 127, 334, 372, 450 |
| Bst2UI | CCWGG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 1 cut(s) | 439 |
| Bst6I | CTCTTC | 1 cut(s) | 147 |
| BstC8I | GCNNGC | 1 cut(s) | 152 |
| BstDEI | CTNAG | 1 cut(s) | 447 |
| BstDSI | CCRYGG | 1 cut(s) | 155 |
| BstF5I | GGATG | 4 cut(s) | 19, 91, 394, 420 |
| BstFNI | CGCG | 1 cut(s) | 58 |
| BstHHI | GCGC | 1 cut(s) | 58 |
| BstKTI | GATC | 4 cut(s) | 130, 337, 375, 453 |
| BstMAI | GTCTC | 3 cut(s) | 77, 183, 233 |
| BstMBI | GATC | 4 cut(s) | 127, 334, 372, 450 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 14, 55, 439 |
| BstNI | CCWGG | 1 cut(s) | 83 |
| BstSCI | CCNGG | 1 cut(s) | 81 |
| BstSFI | CTRYAG | 1 cut(s) | 435 |
| BstUI | CGCG | 1 cut(s) | 58 |
| BstV1I | GCAGC | 1 cut(s) | 299 |
| BstX2I | RGATCY | 2 cut(s) | 372, 450 |
| BstYI | RGATCY | 2 cut(s) | 372, 450 |
| BsuRI | GGCC | 2 cut(s) | 154, 318 |
| BtgI | CCRYGG | 1 cut(s) | 155 |
| BtsCI | GGATG | 4 cut(s) | 19, 91, 394, 420 |
| BtsIMutI | CAGTG | 1 cut(s) | 444 |
| Cac8I | GCNNGC | 1 cut(s) | 152 |
| CfoI | GCGC | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 2 cut(s) | 152, 403 |
| CviAII | CATG | 3 cut(s) | 119, 146, 320 |
| DdeI | CTNAG | 1 cut(s) | 447 |
| DpnI | GATC | 4 cut(s) | 129, 336, 374, 452 |
| DpnII | GATC | 4 cut(s) | 127, 334, 372, 450 |
| EaeI | YGGCCR | 1 cut(s) | 316 |
| Eam1104I | CTCTTC | 1 cut(s) | 147 |
| EarI | CTCTTC | 1 cut(s) | 147 |
| Eco24I | GRGCYC | 1 cut(s) | 142 |
| Eco31I | GGTCTC | 1 cut(s) | 77 |
| Eco47I | GGWCC | 1 cut(s) | 403 |
| EcoRII | CCWGG | 1 cut(s) | 81 |
| EcoT38I | GRGCYC | 1 cut(s) | 142 |
| FaeI | CATG | 3 cut(s) | 122, 149, 323 |
| FaiI | YATR | 8 cut(s) | 11, 120, 147, 195, 321, 408, 465, 510 |
| FaqI | GGGAC | 1 cut(s) | 273 |
| FatI | CATG | 3 cut(s) | 118, 145, 319 |
| FauI | CCCGC | 1 cut(s) | 143 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| FblI | GTMKAC | 1 cut(s) | 341 |
| Fnu4HI | GCNGC | 1 cut(s) | 288 |
| FokI | GGATG | 4 cut(s) | 26, 98, 401, 427 |
| FriOI | GRGCYC | 1 cut(s) | 142 |
| Fsp4HI | GCNGC | 1 cut(s) | 288 |
| FspBI | CTAG | 1 cut(s) | 327 |
| GlaI | GCGC | 1 cut(s) | 57 |
| GluI | GCNGC | 1 cut(s) | 288 |
| HaeIII | GGCC | 2 cut(s) | 154, 318 |
| HapII | CCGG | 2 cut(s) | 69, 376 |
| HhaI | GCGC | 1 cut(s) | 58 |
| Hin1II | CATG | 3 cut(s) | 122, 149, 323 |
| Hin6I | GCGC | 1 cut(s) | 56 |
| HinP1I | GCGC | 1 cut(s) | 56 |
| HincII | GTYRAC | 1 cut(s) | 342 |
| HindII | GTYRAC | 1 cut(s) | 342 |
| HinfI | GANTC | 1 cut(s) | 515 |
| HpaII | CCGG | 2 cut(s) | 69, 376 |
| HphI | GGTGA | 2 cut(s) | 265, 394 |
| Hpy166II | GTNNAC | 1 cut(s) | 342 |
| Hpy188I | TCNGA | 3 cut(s) | 53, 92, 350 |
| Hpy188III | TCNNGA | 1 cut(s) | 488 |
| Hpy8I | GTNNAC | 1 cut(s) | 342 |
| HpyAV | CCTTC | 5 cut(s) | 37, 250, 284, 349, 469 |
| HpyCH4III | ACNGT | 1 cut(s) | 439 |
| HpyCH4V | TGCA | 2 cut(s) | 38, 442 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 14, 55, 439 |
| HpyF3I | CTNAG | 1 cut(s) | 447 |
| Hsp92II | CATG | 3 cut(s) | 122, 149, 323 |
| HspAI | GCGC | 1 cut(s) | 56 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 4 cut(s) | 127, 334, 372, 450 |
| LguI | GCTCTTC | 1 cut(s) | 147 |
| LmnI | GCTCC | 1 cut(s) | 53 |
| Lsp1109I | GCAGC | 1 cut(s) | 299 |
| LweI | GCATC | 1 cut(s) | 4 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeIII | GTNAC | 3 cut(s) | 20, 43, 322 |
| MalI | GATC | 4 cut(s) | 129, 336, 374, 452 |
| MboI | GATC | 4 cut(s) | 127, 334, 372, 450 |
| MboII | GAAGA | 1 cut(s) | 134 |
| MflI | RGATCY | 2 cut(s) | 372, 450 |
| MhlI | GDGCHC | 1 cut(s) | 142 |
| MlsI | TGGCCA | 1 cut(s) | 318 |
| MluNI | TGGCCA | 1 cut(s) | 318 |
| MmeI | TCCRAC | 2 cut(s) | 70, 166 |
| MnlI | CCTC | 3 cut(s) | 352, 355, 363 |
| Mox20I | TGGCCA | 1 cut(s) | 318 |
| MscI | TGGCCA | 1 cut(s) | 318 |
| MseI | TTAA | 1 cut(s) | 279 |
| MslI | CAYNNNNRTG | 1 cut(s) | 349 |
| Msp20I | TGGCCA | 1 cut(s) | 318 |
| MspI | CCGG | 2 cut(s) | 69, 376 |
| MspR9I | CCNGG | 1 cut(s) | 83 |
| MvaI | CCWGG | 1 cut(s) | 83 |
| MvnI | CGCG | 1 cut(s) | 58 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 14, 55, 439 |
| NdeII | GATC | 4 cut(s) | 127, 334, 372, 450 |
| NlaIII | CATG | 3 cut(s) | 122, 149, 323 |
| NlaIV | GGNNCC | 2 cut(s) | 374, 404 |
| NmuCI | GTSAC | 2 cut(s) | 43, 322 |
| PciSI | GCTCTTC | 1 cut(s) | 147 |
| PfeI | GAWTC | 1 cut(s) | 515 |
| PfoI | TCCNGGA | 1 cut(s) | 81 |
| PkrI | GCNGC | 1 cut(s) | 289 |
| Psp6I | CCWGG | 1 cut(s) | 81 |
| PspGI | CCWGG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 2 cut(s) | 374, 404 |
| PspPI | GGNCC | 2 cut(s) | 152, 403 |
| PsuI | RGATCY | 2 cut(s) | 372, 450 |
| RseI | CAYNNNNRTG | 1 cut(s) | 349 |
| SalI | GTCGAC | 1 cut(s) | 340 |
| SapI | GCTCTTC | 1 cut(s) | 147 |
| SaqAI | TTAA | 1 cut(s) | 279 |
| SatI | GCNGC | 1 cut(s) | 288 |
| Sau3AI | GATC | 4 cut(s) | 127, 334, 372, 450 |
| Sau96I | GGNCC | 2 cut(s) | 152, 403 |
| ScrFI | CCNGG | 1 cut(s) | 83 |
| SduI | GDGCHC | 1 cut(s) | 142 |
| SetI | ASST | 2 cut(s) | 413, 448 |
| SfaNI | GCATC | 1 cut(s) | 4 |
| SfcI | CTRYAG | 1 cut(s) | 435 |
| SinI | GGWCC | 1 cut(s) | 403 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 349 |
| SsiI | CCGC | 1 cut(s) | 150 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StyD4I | CCNGG | 1 cut(s) | 81 |
| TaaI | ACNGT | 1 cut(s) | 439 |
| TaqI | TCGA | 3 cut(s) | 30, 341, 423 |
| TfiI | GAWTC | 1 cut(s) | 515 |
| Tru1I | TTAA | 1 cut(s) | 279 |
| Tru9I | TTAA | 1 cut(s) | 279 |
| TscAI | CASTG | 1 cut(s) | 444 |
| TseFI | GTSAC | 2 cut(s) | 43, 322 |
| TseI | GCWGC | 1 cut(s) | 287 |
| Tsp45I | GTSAC | 2 cut(s) | 43, 322 |
| TspDTI | ATGAA | 2 cut(s) | 134, 135 |
| TspGWI | ACGGA | 1 cut(s) | 67 |
| TspRI | CASTG | 1 cut(s) | 444 |
| VpaK11BI | GGWCC | 1 cut(s) | 403 |
| XmiI | GTMKAC | 1 cut(s) | 341 |
| XspI | CTAG | 1 cut(s) | 327 |