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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 49 |
| Acc36I | ACCTGC | 2 cut(s) | 49, 563 |
| AccB1I | GGYRCC | 3 cut(s) | 61, 226, 241 |
| AciI | CCGC | 3 cut(s) | 423, 576, 631 |
| AclWI | GGATC | 1 cut(s) | 521 |
| AflIII | ACRYGT | 1 cut(s) | 46 |
| AgsI | TTSAA | 2 cut(s) | 222, 278 |
| AjnI | CCWGG | 4 cut(s) | 40, 148, 258, 529 |
| AluBI | AGCT | 4 cut(s) | 104, 352, 428, 505 |
| AluI | AGCT | 4 cut(s) | 104, 352, 428, 505 |
| Alw21I | GWGCWC | 1 cut(s) | 538 |
| AlwI | GGATC | 1 cut(s) | 521 |
| Ama87I | CYCGRG | 1 cut(s) | 95 |
| ApeKI | GCWGC | 1 cut(s) | 341 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 113, 145 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 203 |
| AspLEI | GCGC | 1 cut(s) | 581 |
| AspS9I | GGNCC | 1 cut(s) | 552 |
| AsuHPI | GGTGA | 2 cut(s) | 389, 460 |
| AsuNHI | GCTAGC | 1 cut(s) | 670 |
| AvaI | CYCGRG | 1 cut(s) | 95 |
| AvaII | GGWCC | 1 cut(s) | 552 |
| BaeGI | GKGCMC | 1 cut(s) | 607 |
| BanI | GGYRCC | 3 cut(s) | 61, 226, 241 |
| BanII | GRGCYC | 1 cut(s) | 623 |
| BauI | CACGAG | 1 cut(s) | 246 |
| Bbv12I | GWGCWC | 1 cut(s) | 538 |
| BbvI | GCAGC | 1 cut(s) | 353 |
| BccI | CCATC | 3 cut(s) | 74, 177, 396 |
| BceAI | ACGGC | 1 cut(s) | 214 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 622, 656 |
| BciT130I | CCWGG | 4 cut(s) | 42, 150, 260, 531 |
| BclI | TGATCA | 2 cut(s) | 508, 652 |
| BfaI | CTAG | 4 cut(s) | 357, 429, 608, 671 |
| BfuAI | ACCTGC | 2 cut(s) | 49, 563 |
| BisI | GCNGC | 2 cut(s) | 342, 577 |
| BlsI | GCNGC | 2 cut(s) | 343, 578 |
| Bme1390I | CCNGG | 4 cut(s) | 42, 150, 260, 531 |
| Bme18I | GGWCC | 1 cut(s) | 552 |
| BmeT110I | CYCGRG | 1 cut(s) | 95 |
| BmgT120I | GGNCC | 1 cut(s) | 552 |
| BmiI | GGNNCC | 6 cut(s) | 63, 228, 243, 493, 553, 622 |
| BmrFI | CCNGG | 4 cut(s) | 42, 150, 260, 531 |
| BmrI | ACTGGG | 2 cut(s) | 223, 626 |
| BmsI | GCATC | 1 cut(s) | 63 |
| BmtI | GCTAGC | 1 cut(s) | 674 |
| BmuI | ACTGGG | 2 cut(s) | 223, 626 |
| Bpu10I | CCTNAGC | 1 cut(s) | 501 |
| BsaJI | CCNNGG | 3 cut(s) | 148, 258, 415 |
| Bse1I | ACTGG | 3 cut(s) | 218, 243, 621 |
| Bse3DI | GCAATG | 1 cut(s) | 519 |
| BseBI | CCWGG | 4 cut(s) | 42, 150, 260, 531 |
| BseDI | CCNNGG | 3 cut(s) | 148, 258, 415 |
| BseGI | GGATG | 2 cut(s) | 85, 169 |
| BseMI | GCAATG | 1 cut(s) | 519 |
| BseMII | CTCAG | 2 cut(s) | 60, 416 |
| BseNI | ACTGG | 3 cut(s) | 218, 243, 621 |
| BseRI | GAGGAG | 1 cut(s) | 613 |
| BseSI | GKGCMC | 1 cut(s) | 607 |
| BseXI | GCAGC | 1 cut(s) | 353 |
| BsgI | GTGCAG | 1 cut(s) | 148 |
| BshNI | GGYRCC | 3 cut(s) | 61, 226, 241 |
| BsiHKAI | GWGCWC | 1 cut(s) | 538 |
| BsiHKCI | CYCGRG | 1 cut(s) | 95 |
| BslFI | GGGAC | 2 cut(s) | 369, 565 |
| BsmFI | GGGAC | 2 cut(s) | 369, 565 |
| BsoBI | CYCGRG | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 3 cut(s) | 538, 607, 623 |
| Bsp143I | GATC | 3 cut(s) | 508, 526, 652 |
| BspACI | CCGC | 3 cut(s) | 423, 576, 631 |
| BspCNI | CTCAG | 2 cut(s) | 61, 415 |
| BspLI | GGNNCC | 6 cut(s) | 63, 228, 243, 493, 553, 622 |
| BspMI | ACCTGC | 2 cut(s) | 49, 563 |
| BspOI | GCTAGC | 1 cut(s) | 674 |
| BspPI | GGATC | 1 cut(s) | 521 |
| BspT107I | GGYRCC | 3 cut(s) | 61, 226, 241 |
| BsrDI | GCAATG | 1 cut(s) | 519 |
| BsrI | ACTGG | 3 cut(s) | 218, 243, 621 |
| BssECI | CCNNGG | 3 cut(s) | 148, 258, 415 |
| BssMI | GATC | 3 cut(s) | 508, 526, 652 |
| BssSI | CACGAG | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 1 cut(s) | 415 |
| Bst2BI | CACGAG | 1 cut(s) | 246 |
| Bst2UI | CCWGG | 4 cut(s) | 42, 150, 260, 531 |
| Bst4CI | ACNGT | 1 cut(s) | 288 |
| BstC8I | GCNNGC | 3 cut(s) | 668, 672, 676 |
| BstDEI | CTNAG | 4 cut(s) | 69, 267, 402, 501 |
| BstF5I | GGATG | 2 cut(s) | 85, 169 |
| BstHHI | GCGC | 1 cut(s) | 581 |
| BstKTI | GATC | 3 cut(s) | 511, 529, 655 |
| BstMBI | GATC | 3 cut(s) | 508, 526, 652 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 420, 564, 573 |
| BstNI | CCWGG | 4 cut(s) | 42, 150, 260, 531 |
| BstNSI | RCATGY | 1 cut(s) | 50 |
| BstSCI | CCNGG | 4 cut(s) | 40, 148, 258, 529 |
| BstSLI | GKGCMC | 1 cut(s) | 607 |
| BstV1I | GCAGC | 1 cut(s) | 353 |
| BtgZI | GCGATG | 1 cut(s) | 497 |
| BtsCI | GGATG | 2 cut(s) | 85, 169 |
| BtsI | GCAGTG | 3 cut(s) | 588, 607, 651 |
| BtsIMutI | CAGTG | 3 cut(s) | 588, 607, 651 |
| BveI | ACCTGC | 2 cut(s) | 49, 563 |
| Cac8I | GCNNGC | 3 cut(s) | 668, 672, 676 |
| CfoI | GCGC | 1 cut(s) | 581 |
| Cfr13I | GGNCC | 1 cut(s) | 552 |
| CseI | GACGC | 1 cut(s) | 99 |
| CviAII | CATG | 6 cut(s) | 22, 47, 89, 107, 587, 650 |
| DdeI | CTNAG | 4 cut(s) | 69, 267, 402, 501 |
| DpnI | GATC | 3 cut(s) | 510, 528, 654 |
| DpnII | GATC | 3 cut(s) | 508, 526, 652 |
| Eco130I | CCWWGG | 1 cut(s) | 415 |
| Eco24I | GRGCYC | 1 cut(s) | 623 |
| Eco47I | GGWCC | 1 cut(s) | 552 |
| Eco88I | CYCGRG | 1 cut(s) | 95 |
| EcoO109I | RGGNCCY | 1 cut(s) | 552 |
| EcoRII | CCWGG | 4 cut(s) | 40, 148, 258, 529 |
| EcoT14I | CCWWGG | 1 cut(s) | 415 |
| EcoT38I | GRGCYC | 1 cut(s) | 623 |
| ErhI | CCWWGG | 1 cut(s) | 415 |
| FaeI | CATG | 6 cut(s) | 25, 50, 92, 110, 590, 653 |
| FaqI | GGGAC | 2 cut(s) | 369, 565 |
| FatI | CATG | 6 cut(s) | 21, 46, 88, 106, 586, 649 |
| FbaI | TGATCA | 2 cut(s) | 508, 652 |
| Fnu4HI | GCNGC | 2 cut(s) | 342, 577 |
| FokI | GGATG | 2 cut(s) | 92, 156 |
| FriOI | GRGCYC | 1 cut(s) | 623 |
| Fsp4HI | GCNGC | 2 cut(s) | 342, 577 |
| FspBI | CTAG | 4 cut(s) | 357, 429, 608, 671 |
| GlaI | GCGC | 1 cut(s) | 580 |
| GluI | GCNGC | 2 cut(s) | 342, 577 |
| HgaI | GACGC | 1 cut(s) | 99 |
| HhaI | GCGC | 1 cut(s) | 581 |
| Hin1II | CATG | 6 cut(s) | 25, 50, 92, 110, 590, 653 |
| Hin6I | GCGC | 1 cut(s) | 579 |
| HinP1I | GCGC | 1 cut(s) | 579 |
| HindIII | AAGCTT | 1 cut(s) | 503 |
| HinfI | GANTC | 2 cut(s) | 93, 639 |
| HphI | GGTGA | 2 cut(s) | 389, 460 |
| Hpy188I | TCNGA | 5 cut(s) | 189, 294, 380, 405, 540 |
| Hpy188III | TCNNGA | 2 cut(s) | 119, 308 |
| HpyAV | CCTTC | 6 cut(s) | 22, 168, 265, 295, 355, 475 |
| HpyCH4III | ACNGT | 1 cut(s) | 288 |
| HpyCH4IV | ACGT | 2 cut(s) | 15, 123 |
| HpyCH4V | TGCA | 5 cut(s) | 76, 88, 165, 586, 649 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 420, 564, 573 |
| HpyF3I | CTNAG | 4 cut(s) | 69, 267, 402, 501 |
| HpySE526I | ACGT | 2 cut(s) | 15, 123 |
| Hsp92II | CATG | 6 cut(s) | 25, 50, 92, 110, 590, 653 |
| HspAI | GCGC | 1 cut(s) | 579 |
| Ksp22I | TGATCA | 2 cut(s) | 508, 652 |
| Kzo9I | GATC | 3 cut(s) | 508, 526, 652 |
| LmnI | GCTCC | 3 cut(s) | 425, 497, 626 |
| Lsp1109I | GCAGC | 1 cut(s) | 353 |
| LweI | GCATC | 1 cut(s) | 63 |
| MaeI | CTAG | 4 cut(s) | 357, 429, 608, 671 |
| MaeII | ACGT | 2 cut(s) | 15, 123 |
| MaeIII | GTNAC | 3 cut(s) | 49, 111, 479 |
| MalI | GATC | 3 cut(s) | 510, 528, 654 |
| MboI | GATC | 3 cut(s) | 508, 526, 652 |
| MhlI | GDGCHC | 3 cut(s) | 538, 607, 623 |
| MluCI | AATT | 3 cut(s) | 174, 199, 679 |
| MlyI | GAGTC | 1 cut(s) | 87 |
| MnlI | CCTC | 8 cut(s) | 91, 255, 307, 405, 411, 482, 583, 634 |
| MroXI | GAANNNNTTC | 1 cut(s) | 203 |
| MseI | TTAA | 2 cut(s) | 143, 682 |
| MspR9I | CCNGG | 4 cut(s) | 42, 150, 260, 531 |
| MvaI | CCWGG | 4 cut(s) | 42, 150, 260, 531 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 420, 564, 573 |
| NdeII | GATC | 3 cut(s) | 508, 526, 652 |
| NheI | GCTAGC | 1 cut(s) | 670 |
| NlaIII | CATG | 6 cut(s) | 25, 50, 92, 110, 590, 653 |
| NlaIV | GGNNCC | 6 cut(s) | 63, 228, 243, 493, 553, 622 |
| NmuCI | GTSAC | 2 cut(s) | 49, 111 |
| NspI | RCATGY | 1 cut(s) | 50 |
| PaeR7I | CTCGAG | 1 cut(s) | 95 |
| PaqCI | CACCTGC | 1 cut(s) | 49 |
| PciI | ACATGT | 1 cut(s) | 46 |
| PdmI | GAANNNNTTC | 1 cut(s) | 203 |
| PfeI | GAWTC | 1 cut(s) | 639 |
| PfoI | TCCNGGA | 1 cut(s) | 40 |
| PkrI | GCNGC | 2 cut(s) | 343, 578 |
| PleI | GAGTC | 1 cut(s) | 87 |
| PpsI | GAGTC | 1 cut(s) | 87 |
| PpuMI | RGGWCCY | 1 cut(s) | 552 |
| PscI | ACATGT | 1 cut(s) | 46 |
| Psp5II | RGGWCCY | 1 cut(s) | 552 |
| Psp6I | CCWGG | 4 cut(s) | 40, 148, 258, 529 |
| PspGI | CCWGG | 4 cut(s) | 40, 148, 258, 529 |
| PspN4I | GGNNCC | 6 cut(s) | 63, 228, 243, 493, 553, 622 |
| PspPI | GGNCC | 1 cut(s) | 552 |
| PspPPI | RGGWCCY | 1 cut(s) | 552 |
| PspXI | VCTCGAGB | 1 cut(s) | 95 |
| SaqAI | TTAA | 2 cut(s) | 143, 682 |
| SatI | GCNGC | 2 cut(s) | 342, 577 |
| Sau3AI | GATC | 3 cut(s) | 508, 526, 652 |
| Sau96I | GGNCC | 1 cut(s) | 552 |
| SchI | GAGTC | 1 cut(s) | 87 |
| ScrFI | CCNGG | 4 cut(s) | 42, 150, 260, 531 |
| SduI | GDGCHC | 3 cut(s) | 538, 607, 623 |
| SfaNI | GCATC | 1 cut(s) | 63 |
| Sfr274I | CTCGAG | 1 cut(s) | 95 |
| SinI | GGWCC | 1 cut(s) | 552 |
| SlaI | CTCGAG | 1 cut(s) | 95 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| Sse9I | AATT | 3 cut(s) | 174, 199, 679 |
| SsiI | CCGC | 3 cut(s) | 423, 576, 631 |
| SspMI | CTAG | 4 cut(s) | 357, 429, 608, 671 |
| StyD4I | CCNGG | 4 cut(s) | 40, 148, 258, 529 |
| StyI | CCWWGG | 1 cut(s) | 415 |
| TaaI | ACNGT | 1 cut(s) | 288 |
| TaiI | ACGT | 2 cut(s) | 18, 126 |
| TaqI | TCGA | 3 cut(s) | 96, 329, 348 |
| TasI | AATT | 3 cut(s) | 174, 199, 679 |
| TauI | GCSGC | 1 cut(s) | 579 |
| TfiI | GAWTC | 1 cut(s) | 639 |
| Tru1I | TTAA | 2 cut(s) | 143, 682 |
| Tru9I | TTAA | 2 cut(s) | 143, 682 |
| TscAI | CASTG | 3 cut(s) | 588, 607, 651 |
| TseFI | GTSAC | 2 cut(s) | 49, 111 |
| TseI | GCWGC | 1 cut(s) | 341 |
| Tsp45I | GTSAC | 2 cut(s) | 49, 111 |
| TspGWI | ACGGA | 1 cut(s) | 616 |
| TspRI | CASTG | 3 cut(s) | 588, 607, 651 |
| VpaK11BI | GGWCC | 1 cut(s) | 552 |
| XceI | RCATGY | 1 cut(s) | 50 |
| XhoI | CTCGAG | 1 cut(s) | 95 |
| XmnI | GAANNNNTTC | 1 cut(s) | 203 |
| XspI | CTAG | 4 cut(s) | 357, 429, 608, 671 |