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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 61, 226, 241 |
| AclWI | GGATC | 1 cut(s) | 164 |
| AfaI | GTAC | 1 cut(s) | 154 |
| AflIII | ACRYGT | 1 cut(s) | 46 |
| AgsI | TTSAA | 2 cut(s) | 222, 278 |
| AjnI | CCWGG | 3 cut(s) | 40, 148, 258 |
| AluBI | AGCT | 2 cut(s) | 104, 352 |
| AluI | AGCT | 2 cut(s) | 104, 352 |
| AlwI | GGATC | 1 cut(s) | 164 |
| Ama87I | CYCGRG | 1 cut(s) | 95 |
| ApeKI | GCWGC | 1 cut(s) | 341 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 113, 145 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 1 cut(s) | 415 |
| AvaI | CYCGRG | 1 cut(s) | 95 |
| BanI | GGYRCC | 3 cut(s) | 61, 226, 241 |
| BauI | CACGAG | 1 cut(s) | 246 |
| BbvI | GCAGC | 1 cut(s) | 353 |
| BccI | CCATC | 2 cut(s) | 22, 74 |
| BceAI | ACGGC | 1 cut(s) | 214 |
| BciT130I | CCWGG | 3 cut(s) | 42, 150, 260 |
| BfaI | CTAG | 1 cut(s) | 357 |
| BisI | GCNGC | 1 cut(s) | 342 |
| BlsI | GCNGC | 1 cut(s) | 343 |
| Bme1390I | CCNGG | 3 cut(s) | 42, 150, 260 |
| BmeT110I | CYCGRG | 1 cut(s) | 95 |
| BmiI | GGNNCC | 4 cut(s) | 39, 63, 228, 243 |
| BmrFI | CCNGG | 3 cut(s) | 42, 150, 260 |
| BmrI | ACTGGG | 1 cut(s) | 223 |
| BmsI | GCATC | 1 cut(s) | 63 |
| BmuI | ACTGGG | 1 cut(s) | 223 |
| BsaJI | CCNNGG | 2 cut(s) | 148, 258 |
| Bse1I | ACTGG | 1 cut(s) | 218 |
| BseBI | CCWGG | 3 cut(s) | 42, 150, 260 |
| BseDI | CCNNGG | 2 cut(s) | 148, 258 |
| BseGI | GGATG | 1 cut(s) | 85 |
| BseMII | CTCAG | 1 cut(s) | 60 |
| BseNI | ACTGG | 1 cut(s) | 218 |
| BseXI | GCAGC | 1 cut(s) | 353 |
| BsgI | GTGCAG | 1 cut(s) | 148 |
| BshNI | GGYRCC | 3 cut(s) | 61, 226, 241 |
| BsiHKCI | CYCGRG | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 95 |
| Bsp143I | GATC | 4 cut(s) | 169, 376, 397, 420 |
| BspCNI | CTCAG | 1 cut(s) | 61 |
| BspLI | GGNNCC | 4 cut(s) | 39, 63, 228, 243 |
| BspPI | GGATC | 1 cut(s) | 164 |
| BspT107I | GGYRCC | 3 cut(s) | 61, 226, 241 |
| BsrI | ACTGG | 1 cut(s) | 218 |
| BssECI | CCNNGG | 2 cut(s) | 148, 258 |
| BssMI | GATC | 4 cut(s) | 169, 376, 397, 420 |
| BssSI | CACGAG | 1 cut(s) | 246 |
| Bst2BI | CACGAG | 1 cut(s) | 246 |
| Bst2UI | CCWGG | 3 cut(s) | 42, 150, 260 |
| Bst4CI | ACNGT | 1 cut(s) | 288 |
| BstDEI | CTNAG | 1 cut(s) | 69 |
| BstF5I | GGATG | 1 cut(s) | 85 |
| BstKTI | GATC | 4 cut(s) | 172, 379, 400, 423 |
| BstMBI | GATC | 4 cut(s) | 169, 376, 397, 420 |
| BstNI | CCWGG | 3 cut(s) | 42, 150, 260 |
| BstNSI | RCATGY | 1 cut(s) | 50 |
| BstSCI | CCNGG | 3 cut(s) | 40, 148, 258 |
| BstV1I | GCAGC | 1 cut(s) | 353 |
| BtsCI | GGATG | 1 cut(s) | 85 |
| Csp6I | GTAC | 1 cut(s) | 153 |
| CviAII | CATG | 4 cut(s) | 22, 47, 89, 107 |
| CviJI | RGCY | 5 cut(s) | 104, 182, 218, 344, 352 |
| CviKI_1 | RGCY | 5 cut(s) | 104, 182, 218, 344, 352 |
| CviQI | GTAC | 1 cut(s) | 153 |
| DdeI | CTNAG | 1 cut(s) | 69 |
| DpnI | GATC | 4 cut(s) | 171, 378, 399, 422 |
| DpnII | GATC | 4 cut(s) | 169, 376, 397, 420 |
| Eco88I | CYCGRG | 1 cut(s) | 95 |
| EcoRII | CCWGG | 3 cut(s) | 40, 148, 258 |
| FaeI | CATG | 4 cut(s) | 25, 50, 92, 110 |
| FaiI | YATR | 8 cut(s) | 23, 48, 90, 108, 125, 179, 438, 470 |
| FatI | CATG | 4 cut(s) | 21, 46, 88, 106 |
| Fnu4HI | GCNGC | 1 cut(s) | 342 |
| FokI | GGATG | 1 cut(s) | 92 |
| Fsp4HI | GCNGC | 1 cut(s) | 342 |
| FspBI | CTAG | 1 cut(s) | 357 |
| GluI | GCNGC | 1 cut(s) | 342 |
| Hin1II | CATG | 4 cut(s) | 25, 50, 92, 110 |
| HinfI | GANTC | 2 cut(s) | 93, 381 |
| HphI | GGTGA | 1 cut(s) | 415 |
| Hpy188I | TCNGA | 1 cut(s) | 189 |
| Hpy188III | TCNNGA | 1 cut(s) | 119 |
| HpyAV | CCTTC | 4 cut(s) | 168, 265, 295, 355 |
| HpyCH4III | ACNGT | 1 cut(s) | 288 |
| HpyCH4IV | ACGT | 1 cut(s) | 334 |
| HpyCH4V | TGCA | 3 cut(s) | 76, 88, 165 |
| HpyF3I | CTNAG | 1 cut(s) | 69 |
| HpySE526I | ACGT | 1 cut(s) | 334 |
| Hsp92II | CATG | 4 cut(s) | 25, 50, 92, 110 |
| Kzo9I | GATC | 4 cut(s) | 169, 376, 397, 420 |
| Lsp1109I | GCAGC | 1 cut(s) | 353 |
| LweI | GCATC | 1 cut(s) | 63 |
| MaeI | CTAG | 1 cut(s) | 357 |
| MaeII | ACGT | 1 cut(s) | 334 |
| MaeIII | GTNAC | 2 cut(s) | 49, 111 |
| MalI | GATC | 4 cut(s) | 171, 378, 399, 422 |
| MboI | GATC | 4 cut(s) | 169, 376, 397, 420 |
| MluCI | AATT | 3 cut(s) | 174, 199, 236 |
| MlyI | GAGTC | 1 cut(s) | 87 |
| MnlI | CCTC | 6 cut(s) | 91, 255, 307, 396, 420, 427 |
| MroXI | GAANNNNTTC | 1 cut(s) | 203 |
| MseI | TTAA | 2 cut(s) | 143, 267 |
| MslI | CAYNNNNRTG | 2 cut(s) | 26, 467 |
| MspR9I | CCNGG | 3 cut(s) | 42, 150, 260 |
| MvaI | CCWGG | 3 cut(s) | 42, 150, 260 |
| NdeII | GATC | 4 cut(s) | 169, 376, 397, 420 |
| NlaIII | CATG | 4 cut(s) | 25, 50, 92, 110 |
| NlaIV | GGNNCC | 4 cut(s) | 39, 63, 228, 243 |
| NmuCI | GTSAC | 2 cut(s) | 49, 111 |
| NspI | RCATGY | 1 cut(s) | 50 |
| PaeR7I | CTCGAG | 1 cut(s) | 95 |
| PciI | ACATGT | 1 cut(s) | 46 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 376 |
| PdmI | GAANNNNTTC | 1 cut(s) | 203 |
| PfeI | GAWTC | 1 cut(s) | 381 |
| PfoI | TCCNGGA | 1 cut(s) | 40 |
| PkrI | GCNGC | 1 cut(s) | 343 |
| PleI | GAGTC | 1 cut(s) | 87 |
| PpsI | GAGTC | 1 cut(s) | 87 |
| PscI | ACATGT | 1 cut(s) | 46 |
| Psp6I | CCWGG | 3 cut(s) | 40, 148, 258 |
| PspGI | CCWGG | 3 cut(s) | 40, 148, 258 |
| PspN4I | GGNNCC | 4 cut(s) | 39, 63, 228, 243 |
| PspXI | VCTCGAGB | 1 cut(s) | 95 |
| RsaI | GTAC | 1 cut(s) | 154 |
| RsaNI | GTAC | 1 cut(s) | 153 |
| RseI | CAYNNNNRTG | 2 cut(s) | 26, 467 |
| SaqAI | TTAA | 2 cut(s) | 143, 267 |
| SatI | GCNGC | 1 cut(s) | 342 |
| Sau3AI | GATC | 4 cut(s) | 169, 376, 397, 420 |
| SchI | GAGTC | 1 cut(s) | 87 |
| ScrFI | CCNGG | 3 cut(s) | 42, 150, 260 |
| SetI | ASST | 8 cut(s) | 63, 106, 276, 306, 318, 337, 354, 412 |
| SfaNI | GCATC | 1 cut(s) | 63 |
| Sfr274I | CTCGAG | 1 cut(s) | 95 |
| SlaI | CTCGAG | 1 cut(s) | 95 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 26, 467 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| Sse9I | AATT | 3 cut(s) | 174, 199, 236 |
| SspMI | CTAG | 1 cut(s) | 357 |
| StyD4I | CCNGG | 3 cut(s) | 40, 148, 258 |
| TaaI | ACNGT | 1 cut(s) | 288 |
| TaiI | ACGT | 1 cut(s) | 337 |
| TaqI | TCGA | 5 cut(s) | 96, 329, 348, 379, 419 |
| TasI | AATT | 3 cut(s) | 174, 199, 236 |
| TfiI | GAWTC | 1 cut(s) | 381 |
| Tru1I | TTAA | 2 cut(s) | 143, 267 |
| Tru9I | TTAA | 2 cut(s) | 143, 267 |
| TseFI | GTSAC | 2 cut(s) | 49, 111 |
| TseI | GCWGC | 1 cut(s) | 341 |
| Tsp45I | GTSAC | 2 cut(s) | 49, 111 |
| XceI | RCATGY | 1 cut(s) | 50 |
| XhoI | CTCGAG | 1 cut(s) | 95 |
| XmnI | GAANNNNTTC | 1 cut(s) | 203 |
| XspI | CTAG | 1 cut(s) | 357 |