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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 748 |
| AciI | CCGC | 2 cut(s) | 179, 551 |
| AclWI | GGATC | 2 cut(s) | 265, 532 |
| AcoI | YGGCCR | 1 cut(s) | 358 |
| AcuI | CTGAAG | 3 cut(s) | 617, 669, 768 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 645 |
| AgsI | TTSAA | 3 cut(s) | 22, 705, 726 |
| AhlI | ACTAGT | 1 cut(s) | 50 |
| AjnI | CCWGG | 3 cut(s) | 205, 394, 453 |
| AluBI | AGCT | 6 cut(s) | 243, 307, 341, 601, 668, 701 |
| AluI | AGCT | 6 cut(s) | 243, 307, 341, 601, 668, 701 |
| Alw26I | GTCTC | 3 cut(s) | 99, 314, 767 |
| AlwI | GGATC | 2 cut(s) | 265, 532 |
| AoxI | GGCC | 3 cut(s) | 358, 392, 802 |
| ApeKI | GCWGC | 3 cut(s) | 116, 176, 307 |
| AspS9I | GGNCC | 2 cut(s) | 209, 802 |
| AsuC2I | CCSGG | 1 cut(s) | 645 |
| AsuHPI | GGTGA | 4 cut(s) | 211, 688, 764, 793 |
| AvaII | GGWCC | 1 cut(s) | 209 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 60, 93 |
| BalI | TGGCCA | 1 cut(s) | 360 |
| BanII | GRGCYC | 1 cut(s) | 46 |
| BbvI | GCAGC | 3 cut(s) | 128, 163, 294 |
| BccI | CCATC | 2 cut(s) | 220, 428 |
| BciT130I | CCWGG | 3 cut(s) | 207, 396, 455 |
| BcnI | CCSGG | 1 cut(s) | 645 |
| BcoDI | GTCTC | 3 cut(s) | 99, 314, 767 |
| BcuI | ACTAGT | 1 cut(s) | 50 |
| BfaI | CTAG | 5 cut(s) | 39, 51, 410, 426, 564 |
| BfuAI | ACCTGC | 1 cut(s) | 748 |
| BisI | GCNGC | 3 cut(s) | 117, 177, 308 |
| BlsI | GCNGC | 3 cut(s) | 118, 178, 309 |
| Bme1390I | CCNGG | 4 cut(s) | 207, 396, 455, 645 |
| Bme18I | GGWCC | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 2 cut(s) | 209, 802 |
| BmiI | GGNNCC | 2 cut(s) | 89, 222 |
| BmrFI | CCNGG | 4 cut(s) | 207, 396, 455, 645 |
| BmsI | GCATC | 2 cut(s) | 277, 550 |
| BpuEI | CTTGAG | 3 cut(s) | 155, 626, 648 |
| BpuMI | CCSGG | 1 cut(s) | 645 |
| Bsa29I | ATCGAT | 1 cut(s) | 838 |
| BsaJI | CCNNGG | 3 cut(s) | 453, 519, 644 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 645 |
| Bse1I | ACTGG | 1 cut(s) | 812 |
| BseBI | CCWGG | 3 cut(s) | 207, 396, 455 |
| BseCI | ATCGAT | 1 cut(s) | 838 |
| BseDI | CCNNGG | 3 cut(s) | 453, 519, 644 |
| BseGI | GGATG | 4 cut(s) | 79, 439, 478, 565 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 645 |
| BseMII | CTCAG | 1 cut(s) | 162 |
| BseNI | ACTGG | 1 cut(s) | 812 |
| BseRI | GAGGAG | 4 cut(s) | 623, 626, 635, 638 |
| BseXI | GCAGC | 3 cut(s) | 128, 163, 294 |
| BseYI | CCCAGC | 2 cut(s) | 29, 83 |
| BsgI | GTGCAG | 1 cut(s) | 135 |
| BshFI | GGCC | 3 cut(s) | 360, 394, 804 |
| BshVI | ATCGAT | 1 cut(s) | 838 |
| BsiSI | CCGG | 2 cut(s) | 644, 788 |
| BslFI | GGGAC | 2 cut(s) | 46, 436 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 645 |
| BsmAI | GTCTC | 3 cut(s) | 99, 314, 767 |
| BsmBI | CGTCTC | 1 cut(s) | 767 |
| BsmFI | GGGAC | 2 cut(s) | 46, 436 |
| BsnI | GGCC | 3 cut(s) | 360, 394, 804 |
| Bsp1286I | GDGCHC | 1 cut(s) | 46 |
| Bsp143I | GATC | 5 cut(s) | 257, 376, 475, 524, 835 |
| BspACI | CCGC | 2 cut(s) | 179, 551 |
| BspANI | GGCC | 3 cut(s) | 360, 394, 804 |
| BspCNI | CTCAG | 1 cut(s) | 161 |
| BspDI | ATCGAT | 1 cut(s) | 838 |
| BspLI | GGNNCC | 2 cut(s) | 89, 222 |
| BspMI | ACCTGC | 1 cut(s) | 748 |
| BspPI | GGATC | 2 cut(s) | 265, 532 |
| BsrI | ACTGG | 1 cut(s) | 812 |
| BssECI | CCNNGG | 3 cut(s) | 453, 519, 644 |
| BssMI | GATC | 5 cut(s) | 257, 376, 475, 524, 835 |
| BssT1I | CCWWGG | 1 cut(s) | 519 |
| Bst2UI | CCWGG | 3 cut(s) | 207, 396, 455 |
| Bst6I | CTCTTC | 3 cut(s) | 23, 612, 705 |
| BstC8I | GCNNGC | 2 cut(s) | 286, 312 |
| BstDEI | CTNAG | 1 cut(s) | 148 |
| BstF5I | GGATG | 4 cut(s) | 79, 439, 478, 565 |
| BstKTI | GATC | 5 cut(s) | 260, 379, 478, 527, 838 |
| BstMAI | GTCTC | 3 cut(s) | 99, 314, 767 |
| BstMBI | GATC | 5 cut(s) | 257, 376, 475, 524, 835 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 113 |
| BstNI | CCWGG | 3 cut(s) | 207, 396, 455 |
| BstNSI | RCATGY | 1 cut(s) | 288 |
| BstSCI | CCNGG | 4 cut(s) | 205, 394, 453, 643 |
| BstV1I | GCAGC | 3 cut(s) | 128, 163, 294 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 368 |
| Bsu15I | ATCGAT | 1 cut(s) | 838 |
| BsuRI | GGCC | 3 cut(s) | 360, 394, 804 |
| BsuTUI | ATCGAT | 1 cut(s) | 838 |
| BtgZI | GCGATG | 1 cut(s) | 731 |
| BtsCI | GGATG | 4 cut(s) | 79, 439, 478, 565 |
| BtsIMutI | CAGTG | 1 cut(s) | 361 |
| BveI | ACCTGC | 1 cut(s) | 748 |
| Cac8I | GCNNGC | 2 cut(s) | 286, 312 |
| Cfr13I | GGNCC | 2 cut(s) | 209, 802 |
| ClaI | ATCGAT | 1 cut(s) | 838 |
| CviAII | CATG | 1 cut(s) | 285 |
| DdeI | CTNAG | 1 cut(s) | 148 |
| DpnI | GATC | 5 cut(s) | 259, 378, 477, 526, 837 |
| DpnII | GATC | 5 cut(s) | 257, 376, 475, 524, 835 |
| EaeI | YGGCCR | 1 cut(s) | 358 |
| Eam1104I | CTCTTC | 3 cut(s) | 23, 612, 705 |
| EarI | CTCTTC | 3 cut(s) | 23, 612, 705 |
| Eco130I | CCWWGG | 1 cut(s) | 519 |
| Eco24I | GRGCYC | 1 cut(s) | 46 |
| Eco47I | GGWCC | 1 cut(s) | 209 |
| Eco57I | CTGAAG | 3 cut(s) | 617, 669, 768 |
| EcoRII | CCWGG | 3 cut(s) | 205, 394, 453 |
| EcoT14I | CCWWGG | 1 cut(s) | 519 |
| EcoT38I | GRGCYC | 1 cut(s) | 46 |
| ErhI | CCWWGG | 1 cut(s) | 519 |
| Esp3I | CGTCTC | 1 cut(s) | 767 |
| FaeI | CATG | 1 cut(s) | 288 |
| FaiI | YATR | 6 cut(s) | 56, 248, 286, 431, 468, 549 |
| FaqI | GGGAC | 2 cut(s) | 46, 436 |
| FatI | CATG | 1 cut(s) | 284 |
| FauI | CCCGC | 1 cut(s) | 172 |
| Fnu4HI | GCNGC | 3 cut(s) | 117, 177, 308 |
| FokI | GGATG | 4 cut(s) | 86, 446, 485, 572 |
| FriOI | GRGCYC | 1 cut(s) | 46 |
| Fsp4HI | GCNGC | 3 cut(s) | 117, 177, 308 |
| FspBI | CTAG | 5 cut(s) | 39, 51, 410, 426, 564 |
| GluI | GCNGC | 3 cut(s) | 117, 177, 308 |
| GsaI | CCCAGC | 2 cut(s) | 33, 87 |
| HaeIII | GGCC | 3 cut(s) | 360, 394, 804 |
| HapII | CCGG | 2 cut(s) | 644, 788 |
| Hin1II | CATG | 1 cut(s) | 288 |
| HindIII | AAGCTT | 3 cut(s) | 339, 599, 699 |
| HinfI | GANTC | 6 cut(s) | 13, 168, 445, 567, 635, 784 |
| HpaII | CCGG | 2 cut(s) | 644, 788 |
| HphI | GGTGA | 4 cut(s) | 211, 688, 764, 793 |
| Hpy188I | TCNGA | 5 cut(s) | 48, 99, 151, 167, 597 |
| Hpy188III | TCNNGA | 2 cut(s) | 328, 605 |
| HpyAV | CCTTC | 5 cut(s) | 94, 499, 550, 643, 743 |
| HpyCH4IV | ACGT | 1 cut(s) | 229 |
| HpyCH4V | TGCA | 4 cut(s) | 61, 116, 288, 825 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 113 |
| HpyF3I | CTNAG | 1 cut(s) | 148 |
| HpySE526I | ACGT | 1 cut(s) | 229 |
| Hsp92II | CATG | 1 cut(s) | 288 |
| Kzo9I | GATC | 5 cut(s) | 257, 376, 475, 524, 835 |
| Lsp1109I | GCAGC | 3 cut(s) | 128, 163, 294 |
| LweI | GCATC | 2 cut(s) | 277, 550 |
| MaeI | CTAG | 5 cut(s) | 39, 51, 410, 426, 564 |
| MaeII | ACGT | 1 cut(s) | 229 |
| MaeIII | GTNAC | 2 cut(s) | 405, 781 |
| MalI | GATC | 5 cut(s) | 259, 378, 477, 526, 837 |
| MboI | GATC | 5 cut(s) | 257, 376, 475, 524, 835 |
| MboII | GAAGA | 5 cut(s) | 10, 136, 514, 629, 722 |
| MfeI | CAATTG | 1 cut(s) | 726 |
| MhlI | GDGCHC | 1 cut(s) | 46 |
| MlsI | TGGCCA | 1 cut(s) | 360 |
| MluCI | AATT | 4 cut(s) | 22, 160, 272, 726 |
| MluNI | TGGCCA | 1 cut(s) | 360 |
| MlyI | GAGTC | 4 cut(s) | 7, 162, 576, 778 |
| Mox20I | TGGCCA | 1 cut(s) | 360 |
| MscI | TGGCCA | 1 cut(s) | 360 |
| MseI | TTAA | 2 cut(s) | 252, 540 |
| MslI | CAYNNNNRTG | 1 cut(s) | 471 |
| Msp20I | TGGCCA | 1 cut(s) | 360 |
| MspA1I | CMGCKG | 1 cut(s) | 307 |
| MspI | CCGG | 2 cut(s) | 644, 788 |
| MspR9I | CCNGG | 4 cut(s) | 207, 396, 455, 645 |
| MunI | CAATTG | 1 cut(s) | 726 |
| MvaI | CCWGG | 3 cut(s) | 207, 396, 455 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 113 |
| NciI | CCSGG | 1 cut(s) | 645 |
| NdeII | GATC | 5 cut(s) | 257, 376, 475, 524, 835 |
| NlaIII | CATG | 1 cut(s) | 288 |
| NlaIV | GGNNCC | 2 cut(s) | 89, 222 |
| NmuCI | GTSAC | 1 cut(s) | 781 |
| NspI | RCATGY | 1 cut(s) | 288 |
| PaeI | GCATGC | 1 cut(s) | 288 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 221 |
| PfeI | GAWTC | 2 cut(s) | 445, 635 |
| PkrI | GCNGC | 3 cut(s) | 118, 178, 309 |
| PleI | GAGTC | 4 cut(s) | 7, 162, 575, 778 |
| PpsI | GAGTC | 4 cut(s) | 7, 162, 575, 778 |
| Psp6I | CCWGG | 3 cut(s) | 205, 394, 453 |
| PspFI | CCCAGC | 2 cut(s) | 29, 83 |
| PspGI | CCWGG | 3 cut(s) | 205, 394, 453 |
| PspN4I | GGNNCC | 2 cut(s) | 89, 222 |
| PspPI | GGNCC | 2 cut(s) | 209, 802 |
| PvuII | CAGCTG | 1 cut(s) | 307 |
| RseI | CAYNNNNRTG | 1 cut(s) | 471 |
| SaqAI | TTAA | 2 cut(s) | 252, 540 |
| SatI | GCNGC | 3 cut(s) | 117, 177, 308 |
| Sau3AI | GATC | 5 cut(s) | 257, 376, 475, 524, 835 |
| Sau96I | GGNCC | 2 cut(s) | 209, 802 |
| SchI | GAGTC | 4 cut(s) | 7, 162, 576, 778 |
| ScrFI | CCNGG | 4 cut(s) | 207, 396, 455, 645 |
| SduI | GDGCHC | 1 cut(s) | 46 |
| SfaNI | GCATC | 2 cut(s) | 277, 550 |
| SinI | GGWCC | 1 cut(s) | 209 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 471 |
| SmlI | CTYRAG | 3 cut(s) | 170, 605, 663 |
| SmoI | CTYRAG | 3 cut(s) | 170, 605, 663 |
| SpeI | ACTAGT | 1 cut(s) | 50 |
| SphI | GCATGC | 1 cut(s) | 288 |
| Sse9I | AATT | 4 cut(s) | 22, 160, 272, 726 |
| SsiI | CCGC | 2 cut(s) | 179, 551 |
| SspMI | CTAG | 5 cut(s) | 39, 51, 410, 426, 564 |
| StyD4I | CCNGG | 4 cut(s) | 205, 394, 453, 643 |
| StyI | CCWWGG | 1 cut(s) | 519 |
| TaiI | ACGT | 1 cut(s) | 232 |
| TaqI | TCGA | 2 cut(s) | 764, 838 |
| TasI | AATT | 4 cut(s) | 22, 160, 272, 726 |
| TfiI | GAWTC | 2 cut(s) | 445, 635 |
| Tru1I | TTAA | 2 cut(s) | 252, 540 |
| Tru9I | TTAA | 2 cut(s) | 252, 540 |
| TscAI | CASTG | 1 cut(s) | 361 |
| TseFI | GTSAC | 1 cut(s) | 781 |
| TseI | GCWGC | 3 cut(s) | 116, 176, 307 |
| Tsp45I | GTSAC | 1 cut(s) | 781 |
| TspGWI | ACGGA | 3 cut(s) | 86, 598, 791 |
| TspRI | CASTG | 1 cut(s) | 361 |
| VpaK11BI | GGWCC | 1 cut(s) | 209 |
| XceI | RCATGY | 1 cut(s) | 288 |
| XspI | CTAG | 5 cut(s) | 39, 51, 410, 426, 564 |