Rmu_sc0002964.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002964.1
OG0000049
Physical Location & Seq
Forward (+)
36156 .. 37616
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002964.1_g000009.1.cds

Sequence Viewer

Length: 1212 bp
atggcacatactaataatcttggtagtatggctactcacagtccaaccgactctgcaagggtgactttgggagcggcgggtacgacagctatgcaagacaaccattggtatgtggttgggcgtctgctcgggccaaaaactcactttcctggtttcaaagggaccattccttcgatttggccgatcaagtcggggctttctatccatgatgctggagatcgctttctttttcagtttgatcatgaggctgatcgaaatagggcgctgcatgaaggaccgtggtttcacagaagtacgatgctgctggtcggtgactatgatgcggttggctcggtggaggcagtccctttgtggagtatggagacctgggtggtggttaaaaggttactggtggctcttcgtaacaaggcaaccctaaatctgatagggtctgctatgggtcaagtcatcctgtttgatcaaatcgcgtttcggtggaaggaagagaagcagagaatccgattggtgttggatgcccgcagtagagttcgtacctggatgttatttgagttttctcaaacgatgcaacatgagatcaccctgatctatgagaaagttaagggcttctgcggagactgtggccttttcaagcatgatgcgatgagctgcgacggtttttgggtgaaagagaaagaagagcttcagcaagggccaccagaagcagcaatgtctgggttatcactggagataggcaatctgggttcggaccctagtttaagtccattagtggaacaagtgcggccttctgagggactagctgacaacagtggggttagctggtttaagaattggaaggagttggtgtcggactgctctacgaccaaggtactaccaatgcatgtgttgcctacggtgaagaaagcatctctaaagtcgggactggatttgggctcctctactttggctcataaacatggtcaaatcattatctcaccaaagaagaagaagctaggccgtccgcttgggagcaagaataaaccaaaggttgctaggtctttggaaccggagttgaaagaaaggaaatctcgtaactggaagtgtcatgttgattcaactcctgagatgggacctgcaagcatggtcaaggaagcaagcattgccgaggttgaagctttgaaaaaagatggagaaatggaggaggagactgtgtctcttcttgcggaaaatatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

403

Amino Acids

44.78

Weight (kDa)

8.45

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1117
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 467
AciI CCGC 8 cut(s) 74, 77, 323, 517, 609, 778, 998, 1199
AcoI YGGCCR 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 665
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 4 cut(s) 82, 295, 532, 867
AfiI CCNNNNNNNGG 2 cut(s) 788, 1103
AgsI TTSAA 6 cut(s) 157, 628, 1051, 1092, 1148, 1156
AjnI CCWGG 3 cut(s) 148, 365, 533
AluBI AGCT 7 cut(s) 89, 645, 679, 797, 816, 988, 1151
AluI AGCT 7 cut(s) 89, 645, 679, 797, 816, 988, 1151
Alw26I GTCTC 4 cut(s) 356, 606, 1175, 1194
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 6 cut(s) 131, 179, 619, 689, 779, 991
ApeKI GCWGC 4 cut(s) 265, 301, 645, 701
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 6 cut(s) 131, 162, 275, 689, 745, 1106
AsuHPI GGTGA 6 cut(s) 73, 323, 568, 673, 904, 963
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 4 cut(s) 162, 275, 745, 1106
BanII GRGCYC 1 cut(s) 932
BbvI GCAGC 4 cut(s) 252, 288, 632, 713
BccI CCATC 2 cut(s) 1096, 1157
BceAI ACGGC 1 cut(s) 978
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 3 cut(s) 150, 367, 535
BclI TGATCA 2 cut(s) 238, 457
BcoDI GTCTC 4 cut(s) 356, 606, 1175, 1194
BfaI CTAG 4 cut(s) 750, 794, 989, 1029
BfoI RGCGCY 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 1117
BisI GCNGC 6 cut(s) 75, 266, 302, 646, 702, 779
BlsI GCNGC 6 cut(s) 76, 267, 303, 647, 703, 780
Bme1390I CCNGG 3 cut(s) 150, 367, 535
Bme18I GGWCC 4 cut(s) 162, 275, 745, 1106
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 6 cut(s) 131, 162, 275, 689, 745, 1106
BmiI GGNNCC 5 cut(s) 163, 747, 931, 1041, 1107
BmrFI CCNGG 3 cut(s) 150, 367, 535
BmsI GCATC 7 cut(s) 199, 288, 310, 502, 552, 625, 911
BpmI CTGGAG 2 cut(s) 234, 743
BsaHI GRCGYC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 4 cut(s) 278, 366, 861, 1140
BsaWI WCCGGW 1 cut(s) 1042
BsaXI ACNNNNNCTCC 4 cut(s) 827, 857, 1172, 1202
Bsc4I CCNNNNNNNGG 2 cut(s) 788, 1103
Bse1I ACTGG 4 cut(s) 393, 726, 924, 1076
Bse3DI GCAATG 2 cut(s) 711, 1134
BseBI CCWGG 3 cut(s) 150, 367, 535
BseDI CCNNGG 4 cut(s) 278, 366, 861, 1140
BseGI GGATG 3 cut(s) 447, 517, 543
BseLI CCNNNNNNNGG 2 cut(s) 788, 1103
BseMI GCAATG 2 cut(s) 711, 1134
BseMII CTCAG 2 cut(s) 777, 1089
BseNI ACTGG 4 cut(s) 393, 726, 924, 1076
BseRI GAGGAG 3 cut(s) 922, 1190, 1193
BseXI GCAGC 4 cut(s) 252, 288, 632, 713
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 6 cut(s) 133, 181, 621, 691, 781, 993
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 1043
BslFI GGGAC 5 cut(s) 175, 329, 804, 930, 1119
BslI CCNNNNNNNGG 2 cut(s) 788, 1103
BsmAI GTCTC 4 cut(s) 356, 606, 1175, 1194
BsmFI GGGAC 5 cut(s) 175, 329, 804, 930, 1119
BsnI GGCC 6 cut(s) 133, 181, 621, 691, 781, 993
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 932
Bsp143I GATC 7 cut(s) 183, 217, 238, 250, 457, 573, 582
BspACI CCGC 8 cut(s) 74, 77, 323, 517, 609, 778, 998, 1199
BspANI GGCC 6 cut(s) 133, 181, 621, 691, 781, 993
BspCNI CTCAG 2 cut(s) 778, 1090
BspFNI CGCG 1 cut(s) 467
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 5 cut(s) 163, 747, 931, 1041, 1107
BspMI ACCTGC 1 cut(s) 1117
BspQI GCTCTTC 2 cut(s) 402, 669
BspTNI GGTCTC 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 711, 1134
BsrI ACTGG 4 cut(s) 393, 726, 924, 1076
BssECI CCNNGG 4 cut(s) 278, 366, 861, 1140
BssMI GATC 7 cut(s) 183, 217, 238, 250, 457, 573, 582
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 861
Bst2UI CCWGG 3 cut(s) 150, 367, 535
Bst4CI ACNGT 7 cut(s) 41, 279, 617, 653, 806, 892, 1186
Bst6I CTCTTC 4 cut(s) 402, 477, 669, 1197
BstACI GRCGYC 1 cut(s) 121
BstAPI GCANNNNNTGC 2 cut(s) 883, 1136
BstC8I GCNNGC 3 cut(s) 517, 1114, 1132
BstDEI CTNAG 2 cut(s) 786, 1098
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 3 cut(s) 447, 517, 543
BstFNI CGCG 1 cut(s) 467
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 7 cut(s) 186, 220, 241, 253, 460, 576, 585
BstMAI GTCTC 4 cut(s) 356, 606, 1175, 1194
BstMBI GATC 7 cut(s) 183, 217, 238, 250, 457, 573, 582
BstMWI GCNNNNNNNGC 2 cut(s) 883, 1136
BstNI CCWGG 3 cut(s) 150, 367, 535
BstNSI RCATGY 1 cut(s) 881
BstSCI CCNGG 3 cut(s) 148, 365, 533
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 4 cut(s) 252, 288, 632, 713
BstXI CCANNNNNNTGG 1 cut(s) 212
BsuRI GGCC 6 cut(s) 133, 181, 621, 691, 781, 993
BtgI CCRYGG 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 653
BtsCI GGATG 3 cut(s) 447, 517, 543
BtsIMutI CAGTG 2 cut(s) 719, 811
BveI ACCTGC 1 cut(s) 1117
Cac8I GCNNGC 3 cut(s) 517, 1114, 1132
CciI TCATGA 1 cut(s) 241
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 6 cut(s) 131, 162, 275, 689, 745, 1106
CseI GACGC 1 cut(s) 110
Csp6I GTAC 4 cut(s) 81, 294, 531, 866
CviAII CATG 9 cut(s) 206, 242, 269, 569, 632, 878, 953, 1082, 1117
CviQI GTAC 4 cut(s) 81, 294, 531, 866
DdeI CTNAG 2 cut(s) 786, 1098
DpnI GATC 7 cut(s) 185, 219, 240, 252, 459, 575, 584
DpnII GATC 7 cut(s) 183, 217, 238, 250, 457, 573, 582
EaeI YGGCCR 1 cut(s) 179
Eam1104I CTCTTC 4 cut(s) 402, 477, 669, 1197
EarI CTCTTC 4 cut(s) 402, 477, 669, 1197
Eco130I CCWWGG 1 cut(s) 861
Eco24I GRGCYC 1 cut(s) 932
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 4 cut(s) 162, 275, 745, 1106
Eco57I CTGAAG 1 cut(s) 665
Eco88I CYCGRG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 1106
EcoRII CCWGG 3 cut(s) 148, 365, 533
EcoT14I CCWWGG 1 cut(s) 861
EcoT22I ATGCAT 1 cut(s) 879
EcoT38I GRGCYC 1 cut(s) 932
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 9 cut(s) 209, 245, 272, 572, 635, 881, 956, 1085, 1120
FalI AAGNNNNNCTT 4 cut(s) 49, 81, 663, 695
FaqI GGGAC 5 cut(s) 175, 329, 804, 930, 1119
FatI CATG 9 cut(s) 205, 241, 268, 568, 631, 877, 952, 1081, 1116
FauI CCCGC 2 cut(s) 70, 524
FbaI TGATCA 2 cut(s) 238, 457
Fnu4HI GCNGC 6 cut(s) 75, 266, 302, 646, 702, 779
FokI GGATG 3 cut(s) 434, 524, 550
FriOI GRGCYC 1 cut(s) 932
Fsp4HI GCNGC 6 cut(s) 75, 266, 302, 646, 702, 779
FspBI CTAG 4 cut(s) 750, 794, 989, 1029
GlaI GCGC 1 cut(s) 264
GluI GCNGC 6 cut(s) 75, 266, 302, 646, 702, 779
GsuI CTGGAG 2 cut(s) 234, 743
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 6 cut(s) 133, 181, 621, 691, 781, 993
HapII CCGG 1 cut(s) 1043
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 9 cut(s) 209, 245, 272, 572, 635, 881, 956, 1085, 1120
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 1149
HinfI GANTC 3 cut(s) 50, 495, 1088
HpaII CCGG 1 cut(s) 1043
HphI GGTGA 6 cut(s) 73, 323, 568, 673, 904, 963
Hpy188I TCNGA 5 cut(s) 423, 500, 745, 787, 847
Hpy188III TCNNGA 3 cut(s) 242, 915, 1097
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 5 cut(s) 180, 266, 472, 792, 826
HpyCH4III ACNGT 7 cut(s) 41, 279, 617, 653, 806, 892, 1186
HpyCH4V TGCA 6 cut(s) 56, 94, 268, 565, 877, 1112
HpyF10VI GCNNNNNNNGC 2 cut(s) 883, 1136
HpyF3I CTNAG 2 cut(s) 786, 1098
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 9 cut(s) 209, 245, 272, 572, 635, 881, 956, 1085, 1120
HspAI GCGC 1 cut(s) 263
Ksp22I TGATCA 2 cut(s) 238, 457
Kzo9I GATC 7 cut(s) 183, 217, 238, 250, 457, 573, 582
LguI GCTCTTC 2 cut(s) 402, 669
LmnI GCTCC 3 cut(s) 71, 935, 1005
Lsp1109I GCAGC 4 cut(s) 252, 288, 632, 713
LweI GCATC 7 cut(s) 199, 288, 310, 502, 552, 625, 911
MaeI CTAG 4 cut(s) 750, 794, 989, 1029
MaeIII GTNAC 5 cut(s) 61, 311, 384, 401, 1067
MalI GATC 7 cut(s) 185, 219, 240, 252, 459, 575, 584
MbiI CCGCTC 1 cut(s) 74
MboI GATC 7 cut(s) 183, 217, 238, 250, 457, 573, 582
MboII GAAGA 7 cut(s) 389, 494, 686, 907, 991, 994, 1184
MhlI GDGCHC 1 cut(s) 932
MluCI AATT 1 cut(s) 826
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 3 cut(s) 68, 489, 825
MnlI CCTC 7 cut(s) 238, 331, 781, 943, 1135, 1168, 1171
Mph1103I ATGCAT 1 cut(s) 879
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 5 cut(s) 378, 597, 755, 822, 1210
MslI CAYNNNNRTG 2 cut(s) 108, 951
MspI CCGG 1 cut(s) 1043
MspR9I CCNGG 3 cut(s) 150, 367, 535
MvaI CCWGG 3 cut(s) 150, 367, 535
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 2 cut(s) 883, 1136
NdeII GATC 7 cut(s) 183, 217, 238, 250, 457, 573, 582
NlaIII CATG 9 cut(s) 209, 245, 272, 572, 635, 881, 956, 1085, 1120
NlaIV GGNNCC 5 cut(s) 163, 747, 931, 1041, 1107
NmeAIII GCCGAG 1 cut(s) 1165
NmuCI GTSAC 2 cut(s) 61, 311
NsiI ATGCAT 1 cut(s) 879
NspI RCATGY 1 cut(s) 881
PagI TCATGA 1 cut(s) 241
PciSI GCTCTTC 2 cut(s) 402, 669
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 2 cut(s) 495, 1088
PflFI GACNNNGTC 1 cut(s) 1186
PkrI GCNGC 6 cut(s) 76, 267, 303, 647, 703, 780
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 1106
Psp5II RGGWCCY 1 cut(s) 1106
Psp6I CCWGG 3 cut(s) 148, 365, 533
PspGI CCWGG 3 cut(s) 148, 365, 533
PspN4I GGNNCC 5 cut(s) 163, 747, 931, 1041, 1107
PspPI GGNCC 6 cut(s) 131, 162, 275, 689, 745, 1106
PspPPI RGGWCCY 1 cut(s) 1106
PsyI GACNNNGTC 1 cut(s) 1186
RsaI GTAC 4 cut(s) 82, 295, 532, 867
RsaNI GTAC 4 cut(s) 81, 294, 531, 866
RseI CAYNNNNRTG 2 cut(s) 108, 951
SapI GCTCTTC 2 cut(s) 402, 669
SaqAI TTAA 5 cut(s) 378, 597, 755, 822, 1210
SatI GCNGC 6 cut(s) 75, 266, 302, 646, 702, 779
Sau3AI GATC 7 cut(s) 183, 217, 238, 250, 457, 573, 582
Sau96I GGNCC 6 cut(s) 131, 162, 275, 689, 745, 1106
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 3 cut(s) 150, 367, 535
SduI GDGCHC 1 cut(s) 932
SfaNI GCATC 7 cut(s) 199, 288, 310, 502, 552, 625, 911
SinI GGWCC 4 cut(s) 162, 275, 745, 1106
SmiMI CAYNNNNRTG 2 cut(s) 108, 951
Sse9I AATT 1 cut(s) 826
SsiI CCGC 8 cut(s) 74, 77, 323, 517, 609, 778, 998, 1199
SspI AATATT 1 cut(s) 1207
SspMI CTAG 4 cut(s) 750, 794, 989, 1029
StyD4I CCNGG 3 cut(s) 148, 365, 533
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 7 cut(s) 41, 279, 617, 653, 806, 892, 1186
TaqI TCGA 2 cut(s) 173, 253
TasI AATT 1 cut(s) 826
TauI GCSGC 2 cut(s) 77, 781
TfiI GAWTC 2 cut(s) 495, 1088
Tru1I TTAA 5 cut(s) 378, 597, 755, 822, 1210
Tru9I TTAA 5 cut(s) 378, 597, 755, 822, 1210
TscAI CASTG 2 cut(s) 726, 811
TseFI GTSAC 2 cut(s) 61, 311
TseI GCWGC 4 cut(s) 265, 301, 645, 701
Tsp45I GTSAC 2 cut(s) 61, 311
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 2 cut(s) 726, 811
Tth111I GACNNNGTC 1 cut(s) 1186
VpaK11BI GGWCC 4 cut(s) 162, 275, 745, 1106
XceI RCATGY 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 4 cut(s) 750, 794, 989, 1029
Zsp2I ATGCAT 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.