Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 102 - 149 | 9.5e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 433 |
| AccII | CGCG | 1 cut(s) | 39 |
| AciI | CCGC | 5 cut(s) | 69, 170, 271, 527, 665 |
| AclWI | GGATC | 1 cut(s) | 232 |
| AcsI | RAATTY | 2 cut(s) | 248, 486 |
| AcuI | CTGAAG | 1 cut(s) | 687 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 116, 433, 742 |
| AflII | CTTAAG | 1 cut(s) | 647 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 121 |
| AjnI | CCWGG | 3 cut(s) | 74, 593, 660 |
| AluBI | AGCT | 2 cut(s) | 554, 764 |
| AluI | AGCT | 2 cut(s) | 554, 764 |
| Alw21I | GWGCWC | 1 cut(s) | 766 |
| Alw26I | GTCTC | 3 cut(s) | 129, 543, 585 |
| AlwI | GGATC | 1 cut(s) | 232 |
| ApeKI | GCWGC | 2 cut(s) | 441, 554 |
| ApoI | RAATTY | 2 cut(s) | 248, 486 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 306, 338 |
| AspLEI | GCGC | 1 cut(s) | 270 |
| AspS9I | GGNCC | 1 cut(s) | 71 |
| AsuHPI | GGTGA | 3 cut(s) | 313, 509, 617 |
| AvaII | GGWCC | 1 cut(s) | 71 |
| BanII | GRGCYC | 1 cut(s) | 766 |
| Bbv12I | GWGCWC | 1 cut(s) | 766 |
| BbvCI | CCTCAGC | 1 cut(s) | 531 |
| BbvI | GCAGC | 2 cut(s) | 428, 541 |
| BccI | CCATC | 4 cut(s) | 160, 476, 496, 687 |
| BceAI | ACGGC | 1 cut(s) | 540 |
| BciT130I | CCWGG | 3 cut(s) | 76, 595, 662 |
| BclI | TGATCA | 1 cut(s) | 253 |
| BcoDI | GTCTC | 3 cut(s) | 129, 543, 585 |
| BfaI | CTAG | 3 cut(s) | 558, 585, 611 |
| BfmI | CTRYAG | 1 cut(s) | 753 |
| BfrI | CTTAAG | 1 cut(s) | 647 |
| BglII | AGATCT | 1 cut(s) | 159 |
| BisI | GCNGC | 5 cut(s) | 271, 442, 528, 555, 666 |
| BlsI | GCNGC | 5 cut(s) | 272, 443, 529, 556, 667 |
| Bme1390I | CCNGG | 3 cut(s) | 76, 595, 662 |
| Bme18I | GGWCC | 1 cut(s) | 71 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 1 cut(s) | 71 |
| BmiI | GGNNCC | 2 cut(s) | 73, 659 |
| BmrFI | CCNGG | 3 cut(s) | 76, 595, 662 |
| BmrI | ACTGGG | 1 cut(s) | 243 |
| BmsI | GCATC | 1 cut(s) | 268 |
| BmuI | ACTGGG | 1 cut(s) | 243 |
| BpmI | CTGGAG | 1 cut(s) | 534 |
| Bpu10I | CCTNAGC | 1 cut(s) | 531 |
| Bsa29I | ATCGAT | 1 cut(s) | 306 |
| BsaJI | CCNNGG | 4 cut(s) | 64, 74, 153, 593 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 116, 433, 742 |
| Bse1I | ACTGG | 3 cut(s) | 238, 303, 491 |
| Bse3DI | GCAATG | 3 cut(s) | 94, 102, 280 |
| BseBI | CCWGG | 3 cut(s) | 76, 595, 662 |
| BseCI | ATCGAT | 1 cut(s) | 306 |
| BseDI | CCNNGG | 4 cut(s) | 64, 74, 153, 593 |
| BseGI | GGATG | 2 cut(s) | 171, 487 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 116, 433, 742 |
| BseMI | GCAATG | 3 cut(s) | 94, 102, 280 |
| BseMII | CTCAG | 1 cut(s) | 522 |
| BseNI | ACTGG | 3 cut(s) | 238, 303, 491 |
| BseXI | GCAGC | 2 cut(s) | 428, 541 |
| Bsh1236I | CGCG | 1 cut(s) | 39 |
| BshVI | ATCGAT | 1 cut(s) | 306 |
| BsiHKAI | GWGCWC | 1 cut(s) | 766 |
| BsiSI | CCGG | 1 cut(s) | 479 |
| BslFI | GGGAC | 1 cut(s) | 57 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 116, 433, 742 |
| BsmAI | GTCTC | 3 cut(s) | 129, 543, 585 |
| BsmFI | GGGAC | 1 cut(s) | 57 |
| Bsp1286I | GDGCHC | 1 cut(s) | 766 |
| Bsp143I | GATC | 7 cut(s) | 34, 159, 224, 253, 303, 445, 607 |
| Bsp19I | CCATGG | 2 cut(s) | 64, 153 |
| Bsp68I | TCGCGA | 1 cut(s) | 39 |
| BspACI | CCGC | 5 cut(s) | 69, 170, 271, 527, 665 |
| BspCNI | CTCAG | 1 cut(s) | 523 |
| BspDI | ATCGAT | 1 cut(s) | 306 |
| BspFNI | CGCG | 1 cut(s) | 39 |
| BspLI | GGNNCC | 2 cut(s) | 73, 659 |
| BspPI | GGATC | 1 cut(s) | 232 |
| BspTI | CTTAAG | 1 cut(s) | 647 |
| BsrDI | GCAATG | 3 cut(s) | 94, 102, 280 |
| BsrI | ACTGG | 3 cut(s) | 238, 303, 491 |
| BssECI | CCNNGG | 4 cut(s) | 64, 74, 153, 593 |
| BssMI | GATC | 7 cut(s) | 34, 159, 224, 253, 303, 445, 607 |
| BssT1I | CCWWGG | 2 cut(s) | 64, 153 |
| Bst2UI | CCWGG | 3 cut(s) | 76, 595, 662 |
| Bst4CI | ACNGT | 3 cut(s) | 318, 688, 754 |
| Bst6I | CTCTTC | 1 cut(s) | 150 |
| BstAFI | CTTAAG | 1 cut(s) | 647 |
| BstDEI | CTNAG | 1 cut(s) | 531 |
| BstDSI | CCRYGG | 2 cut(s) | 64, 153 |
| BstEII | GGTNACC | 1 cut(s) | 180 |
| BstF5I | GGATG | 2 cut(s) | 171, 487 |
| BstFNI | CGCG | 1 cut(s) | 39 |
| BstHHI | GCGC | 1 cut(s) | 270 |
| BstKTI | GATC | 7 cut(s) | 37, 162, 227, 256, 306, 448, 610 |
| BstMAI | GTCTC | 3 cut(s) | 129, 543, 585 |
| BstMBI | GATC | 7 cut(s) | 34, 159, 224, 253, 303, 445, 607 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 641 |
| BstNI | CCWGG | 3 cut(s) | 76, 595, 662 |
| BstPI | GGTNACC | 1 cut(s) | 180 |
| BstSCI | CCNGG | 3 cut(s) | 74, 593, 660 |
| BstSFI | CTRYAG | 1 cut(s) | 753 |
| BstUI | CGCG | 1 cut(s) | 39 |
| BstV1I | GCAGC | 2 cut(s) | 428, 541 |
| BstX2I | RGATCY | 2 cut(s) | 159, 224 |
| BstYI | RGATCY | 2 cut(s) | 159, 224 |
| Bsu15I | ATCGAT | 1 cut(s) | 306 |
| BsuTUI | ATCGAT | 1 cut(s) | 306 |
| BtgI | CCRYGG | 2 cut(s) | 64, 153 |
| BtsCI | GGATG | 2 cut(s) | 171, 487 |
| BtsI | GCAGTG | 2 cut(s) | 369, 642 |
| BtsIMutI | CAGTG | 2 cut(s) | 369, 642 |
| BtuMI | TCGCGA | 1 cut(s) | 39 |
| CfoI | GCGC | 1 cut(s) | 270 |
| Cfr13I | GGNCC | 1 cut(s) | 71 |
| ClaI | ATCGAT | 1 cut(s) | 306 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 394, 429 |
| CviAII | CATG | 4 cut(s) | 65, 94, 154, 428 |
| DdeI | CTNAG | 1 cut(s) | 531 |
| DpnI | GATC | 7 cut(s) | 36, 161, 226, 255, 305, 447, 609 |
| DpnII | GATC | 7 cut(s) | 34, 159, 224, 253, 303, 445, 607 |
| DriI | GACNNNNNGTC | 1 cut(s) | 121 |
| Eam1104I | CTCTTC | 1 cut(s) | 150 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 121 |
| EarI | CTCTTC | 1 cut(s) | 150 |
| Ecl136II | GAGCTC | 1 cut(s) | 764 |
| Eco130I | CCWWGG | 2 cut(s) | 64, 153 |
| Eco24I | GRGCYC | 1 cut(s) | 766 |
| Eco47I | GGWCC | 1 cut(s) | 71 |
| Eco53kI | GAGCTC | 1 cut(s) | 764 |
| Eco57I | CTGAAG | 1 cut(s) | 687 |
| Eco91I | GGTNACC | 1 cut(s) | 180 |
| EcoICRI | GAGCTC | 1 cut(s) | 764 |
| EcoO65I | GGTNACC | 1 cut(s) | 180 |
| EcoRI | GAATTC | 1 cut(s) | 486 |
| EcoRII | CCWGG | 3 cut(s) | 74, 593, 660 |
| EcoT14I | CCWWGG | 2 cut(s) | 64, 153 |
| EcoT38I | GRGCYC | 1 cut(s) | 766 |
| ErhI | CCWWGG | 2 cut(s) | 64, 153 |
| FaeI | CATG | 4 cut(s) | 68, 97, 157, 431 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 194, 226 |
| FaqI | GGGAC | 1 cut(s) | 57 |
| FatI | CATG | 4 cut(s) | 64, 93, 153, 427 |
| FbaI | TGATCA | 1 cut(s) | 253 |
| Fnu4HI | GCNGC | 5 cut(s) | 271, 442, 528, 555, 666 |
| FokI | GGATG | 2 cut(s) | 178, 494 |
| FriOI | GRGCYC | 1 cut(s) | 766 |
| Fsp4HI | GCNGC | 5 cut(s) | 271, 442, 528, 555, 666 |
| FspBI | CTAG | 3 cut(s) | 558, 585, 611 |
| GlaI | GCGC | 1 cut(s) | 269 |
| GluI | GCNGC | 5 cut(s) | 271, 442, 528, 555, 666 |
| GsuI | CTGGAG | 1 cut(s) | 534 |
| HapII | CCGG | 1 cut(s) | 479 |
| HhaI | GCGC | 1 cut(s) | 270 |
| Hin1II | CATG | 4 cut(s) | 68, 97, 157, 431 |
| Hin6I | GCGC | 1 cut(s) | 268 |
| HinP1I | GCGC | 1 cut(s) | 268 |
| HinfI | GANTC | 3 cut(s) | 41, 134, 291 |
| HpaII | CCGG | 1 cut(s) | 479 |
| HphI | GGTGA | 3 cut(s) | 313, 509, 617 |
| Hpy188I | TCNGA | 2 cut(s) | 46, 684 |
| Hpy188III | TCNNGA | 4 cut(s) | 38, 163, 244, 514 |
| Hpy99I | CGWCG | 1 cut(s) | 526 |
| HpyAV | CCTTC | 2 cut(s) | 555, 634 |
| HpyCH4III | ACNGT | 3 cut(s) | 318, 688, 754 |
| HpyCH4V | TGCA | 3 cut(s) | 107, 281, 405 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 641 |
| HpyF3I | CTNAG | 1 cut(s) | 531 |
| Hsp92II | CATG | 4 cut(s) | 68, 97, 157, 431 |
| HspAI | GCGC | 1 cut(s) | 268 |
| Ksp22I | TGATCA | 1 cut(s) | 253 |
| Kzo9I | GATC | 7 cut(s) | 34, 159, 224, 253, 303, 445, 607 |
| LmnI | GCTCC | 2 cut(s) | 463, 761 |
| Lsp1109I | GCAGC | 2 cut(s) | 428, 541 |
| LweI | GCATC | 1 cut(s) | 268 |
| MaeI | CTAG | 3 cut(s) | 558, 585, 611 |
| MaeIII | GTNAC | 1 cut(s) | 180 |
| MalI | GATC | 7 cut(s) | 36, 161, 226, 255, 305, 447, 609 |
| MboI | GATC | 7 cut(s) | 34, 159, 224, 253, 303, 445, 607 |
| MboII | GAAGA | 2 cut(s) | 137, 727 |
| MflI | RGATCY | 2 cut(s) | 159, 224 |
| MhlI | GDGCHC | 1 cut(s) | 766 |
| MluCI | AATT | 3 cut(s) | 29, 248, 486 |
| MmeI | TCCRAC | 1 cut(s) | 319 |
| MnlI | CCTC | 7 cut(s) | 153, 195, 232, 430, 463, 521, 526 |
| MseI | TTAA | 3 cut(s) | 393, 459, 648 |
| MspA1I | CMGCKG | 1 cut(s) | 554 |
| MspCI | CTTAAG | 1 cut(s) | 647 |
| MspI | CCGG | 1 cut(s) | 479 |
| MspR9I | CCNGG | 3 cut(s) | 76, 595, 662 |
| MvaI | CCWGG | 3 cut(s) | 76, 595, 662 |
| MvnI | CGCG | 1 cut(s) | 39 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 641 |
| NcoI | CCATGG | 2 cut(s) | 64, 153 |
| NdeII | GATC | 7 cut(s) | 34, 159, 224, 253, 303, 445, 607 |
| NlaIII | CATG | 4 cut(s) | 68, 97, 157, 431 |
| NlaIV | GGNNCC | 2 cut(s) | 73, 659 |
| NruI | TCGCGA | 1 cut(s) | 39 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 193, 322, 331 |
| PfeI | GAWTC | 3 cut(s) | 41, 134, 291 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 433 |
| PkrI | GCNGC | 5 cut(s) | 272, 443, 529, 556, 667 |
| Psp124BI | GAGCTC | 1 cut(s) | 766 |
| Psp6I | CCWGG | 3 cut(s) | 74, 593, 660 |
| PspEI | GGTNACC | 1 cut(s) | 180 |
| PspGI | CCWGG | 3 cut(s) | 74, 593, 660 |
| PspN4I | GGNNCC | 2 cut(s) | 73, 659 |
| PspPI | GGNCC | 1 cut(s) | 71 |
| PsuI | RGATCY | 2 cut(s) | 159, 224 |
| PvuII | CAGCTG | 1 cut(s) | 554 |
| RruI | TCGCGA | 1 cut(s) | 39 |
| SacI | GAGCTC | 1 cut(s) | 766 |
| SaqAI | TTAA | 3 cut(s) | 393, 459, 648 |
| SatI | GCNGC | 5 cut(s) | 271, 442, 528, 555, 666 |
| Sau3AI | GATC | 7 cut(s) | 34, 159, 224, 253, 303, 445, 607 |
| Sau96I | GGNCC | 1 cut(s) | 71 |
| ScrFI | CCNGG | 3 cut(s) | 76, 595, 662 |
| SduI | GDGCHC | 1 cut(s) | 766 |
| SetI | ASST | 9 cut(s) | 112, 187, 243, 261, 393, 513, 537, 556, 766 |
| SfaNI | GCATC | 1 cut(s) | 268 |
| SfcI | CTRYAG | 1 cut(s) | 753 |
| SinI | GGWCC | 1 cut(s) | 71 |
| SmlI | CTYRAG | 1 cut(s) | 647 |
| SmoI | CTYRAG | 1 cut(s) | 647 |
| Sse9I | AATT | 3 cut(s) | 29, 248, 486 |
| SsiI | CCGC | 5 cut(s) | 69, 170, 271, 527, 665 |
| SspMI | CTAG | 3 cut(s) | 558, 585, 611 |
| SstI | GAGCTC | 1 cut(s) | 766 |
| StyD4I | CCNGG | 3 cut(s) | 74, 593, 660 |
| StyI | CCWWGG | 2 cut(s) | 64, 153 |
| TaaI | ACNGT | 3 cut(s) | 318, 688, 754 |
| TaqI | TCGA | 3 cut(s) | 187, 306, 515 |
| TasI | AATT | 3 cut(s) | 29, 248, 486 |
| TauI | GCSGC | 3 cut(s) | 273, 530, 668 |
| TfiI | GAWTC | 3 cut(s) | 41, 134, 291 |
| Tru1I | TTAA | 3 cut(s) | 393, 459, 648 |
| Tru9I | TTAA | 3 cut(s) | 393, 459, 648 |
| TscAI | CASTG | 2 cut(s) | 369, 642 |
| TseI | GCWGC | 2 cut(s) | 441, 554 |
| TspDTI | ATGAA | 3 cut(s) | 137, 399, 728 |
| TspRI | CASTG | 2 cut(s) | 369, 642 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 433 |
| Vha464I | CTTAAG | 1 cut(s) | 647 |
| VpaK11BI | GGWCC | 1 cut(s) | 71 |
| XapI | RAATTY | 2 cut(s) | 248, 486 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 686 |
| XspI | CTAG | 3 cut(s) | 558, 585, 611 |