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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 40, 385 |
| Acc36I | ACCTGC | 2 cut(s) | 40, 385 |
| Acc65I | GGTACC | 1 cut(s) | 139 |
| AccB1I | GGYRCC | 1 cut(s) | 139 |
| AccIII | TCCGGA | 1 cut(s) | 31 |
| AclWI | GGATC | 3 cut(s) | 23, 36, 86 |
| AcsI | RAATTY | 1 cut(s) | 298 |
| AcyI | GRCGYC | 1 cut(s) | 475 |
| AfaI | GTAC | 2 cut(s) | 141, 610 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 38 |
| AgsI | TTSAA | 2 cut(s) | 587, 593 |
| AjiI | CACGTC | 1 cut(s) | 112 |
| AjnI | CCWGG | 1 cut(s) | 469 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 290, 322 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 188, 220 |
| AluBI | AGCT | 6 cut(s) | 306, 346, 391, 515, 575, 629 |
| AluI | AGCT | 6 cut(s) | 306, 346, 391, 515, 575, 629 |
| Alw21I | GWGCWC | 2 cut(s) | 57, 348 |
| Alw26I | GTCTC | 1 cut(s) | 669 |
| AlwI | GGATC | 3 cut(s) | 23, 36, 86 |
| Ama87I | CYCGRG | 1 cut(s) | 510 |
| Aor13HI | TCCGGA | 1 cut(s) | 31 |
| ApeKI | GCWGC | 5 cut(s) | 46, 244, 391, 421, 424 |
| ApoI | RAATTY | 1 cut(s) | 298 |
| Asp718I | GGTACC | 1 cut(s) | 139 |
| AspA2I | CCTAGG | 1 cut(s) | 227 |
| AsuHPI | GGTGA | 2 cut(s) | 244, 590 |
| AvaI | CYCGRG | 1 cut(s) | 510 |
| AvrII | CCTAGG | 1 cut(s) | 227 |
| BamHI | GGATCC | 1 cut(s) | 28 |
| BanI | GGYRCC | 1 cut(s) | 139 |
| BanII | GRGCYC | 2 cut(s) | 323, 348 |
| Bbv12I | GWGCWC | 2 cut(s) | 57, 348 |
| BbvI | GCAGC | 5 cut(s) | 33, 256, 378, 408, 436 |
| BccI | CCATC | 3 cut(s) | 19, 223, 280 |
| BciT130I | CCWGG | 1 cut(s) | 471 |
| BcoDI | GTCTC | 1 cut(s) | 669 |
| BfaI | CTAG | 1 cut(s) | 228 |
| BfmI | CTRYAG | 3 cut(s) | 47, 392, 422 |
| BfuAI | ACCTGC | 2 cut(s) | 40, 385 |
| BisI | GCNGC | 5 cut(s) | 47, 245, 392, 422, 425 |
| BlnI | CCTAGG | 1 cut(s) | 227 |
| BlsI | GCNGC | 5 cut(s) | 48, 246, 393, 423, 426 |
| Bme1390I | CCNGG | 1 cut(s) | 471 |
| BmeT110I | CYCGRG | 1 cut(s) | 510 |
| BmgBI | CACGTC | 1 cut(s) | 112 |
| BmiI | GGNNCC | 2 cut(s) | 30, 141 |
| BmrFI | CCNGG | 1 cut(s) | 471 |
| BmrI | ACTGGG | 1 cut(s) | 208 |
| BmsI | GCATC | 3 cut(s) | 104, 212, 408 |
| BmuI | ACTGGG | 1 cut(s) | 208 |
| BsaHI | GRCGYC | 1 cut(s) | 475 |
| BsaJI | CCNNGG | 3 cut(s) | 227, 470, 481 |
| BsaWI | WCCGGW | 1 cut(s) | 31 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 647, 677 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 38 |
| Bse1I | ACTGG | 1 cut(s) | 203 |
| BseAI | TCCGGA | 1 cut(s) | 31 |
| BseBI | CCWGG | 1 cut(s) | 471 |
| BseDI | CCNNGG | 3 cut(s) | 227, 470, 481 |
| BseGI | GGATG | 5 cut(s) | 91, 203, 215, 406, 532 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 38 |
| BseMII | CTCAG | 3 cut(s) | 168, 261, 378 |
| BseNI | ACTGG | 1 cut(s) | 203 |
| BseXI | GCAGC | 5 cut(s) | 33, 256, 378, 408, 436 |
| BseYI | CCCAGC | 1 cut(s) | 629 |
| BshNI | GGYRCC | 1 cut(s) | 139 |
| BsiHKAI | GWGCWC | 2 cut(s) | 57, 348 |
| BsiHKCI | CYCGRG | 1 cut(s) | 510 |
| BsiSI | CCGG | 1 cut(s) | 32 |
| BslFI | GGGAC | 3 cut(s) | 169, 462, 581 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 38 |
| BsmAI | GTCTC | 1 cut(s) | 669 |
| BsmFI | GGGAC | 3 cut(s) | 169, 462, 581 |
| BsoBI | CYCGRG | 1 cut(s) | 510 |
| Bsp1286I | GDGCHC | 3 cut(s) | 57, 323, 348 |
| Bsp13I | TCCGGA | 1 cut(s) | 31 |
| Bsp143I | GATC | 5 cut(s) | 28, 78, 234, 441, 615 |
| BspCNI | CTCAG | 3 cut(s) | 169, 262, 379 |
| BspEI | TCCGGA | 1 cut(s) | 31 |
| BspLI | GGNNCC | 2 cut(s) | 30, 141 |
| BspMAI | CTGCAG | 3 cut(s) | 51, 396, 426 |
| BspMI | ACCTGC | 2 cut(s) | 40, 385 |
| BspPI | GGATC | 3 cut(s) | 23, 36, 86 |
| BspQI | GCTCTTC | 1 cut(s) | 381 |
| BspT107I | GGYRCC | 1 cut(s) | 139 |
| BsrI | ACTGG | 1 cut(s) | 203 |
| BssECI | CCNNGG | 3 cut(s) | 227, 470, 481 |
| BssMI | GATC | 5 cut(s) | 28, 78, 234, 441, 615 |
| BssNI | GRCGYC | 1 cut(s) | 475 |
| BssT1I | CCWWGG | 1 cut(s) | 227 |
| Bst2UI | CCWGG | 1 cut(s) | 471 |
| Bst4CI | ACNGT | 1 cut(s) | 160 |
| Bst6I | CTCTTC | 3 cut(s) | 269, 381, 588 |
| BstACI | GRCGYC | 1 cut(s) | 475 |
| BstDEI | CTNAG | 6 cut(s) | 177, 261, 270, 351, 387, 456 |
| BstDSI | CCRYGG | 1 cut(s) | 481 |
| BstF5I | GGATG | 5 cut(s) | 91, 203, 215, 406, 532 |
| BstKTI | GATC | 5 cut(s) | 31, 81, 237, 444, 618 |
| BstMAI | GTCTC | 1 cut(s) | 669 |
| BstMBI | GATC | 5 cut(s) | 28, 78, 234, 441, 615 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 52, 61, 70, 529, 635 |
| BstNI | CCWGG | 1 cut(s) | 471 |
| BstSCI | CCNGG | 1 cut(s) | 469 |
| BstSFI | CTRYAG | 3 cut(s) | 47, 392, 422 |
| BstV1I | GCAGC | 5 cut(s) | 33, 256, 378, 408, 436 |
| BstX2I | RGATCY | 1 cut(s) | 28 |
| BstYI | RGATCY | 1 cut(s) | 28 |
| BtgI | CCRYGG | 1 cut(s) | 481 |
| BtgZI | GCGATG | 1 cut(s) | 299 |
| BtrI | CACGTC | 1 cut(s) | 112 |
| BtsCI | GGATG | 5 cut(s) | 91, 203, 215, 406, 532 |
| BtsIMutI | CAGTG | 1 cut(s) | 384 |
| BveI | ACCTGC | 2 cut(s) | 40, 385 |
| CseI | GACGC | 1 cut(s) | 464 |
| Csp6I | GTAC | 2 cut(s) | 140, 609 |
| CviAII | CATG | 5 cut(s) | 65, 92, 104, 163, 208 |
| CviQI | GTAC | 2 cut(s) | 140, 609 |
| DdeI | CTNAG | 6 cut(s) | 177, 261, 270, 351, 387, 456 |
| DpnI | GATC | 5 cut(s) | 30, 80, 236, 443, 617 |
| DpnII | GATC | 5 cut(s) | 28, 78, 234, 441, 615 |
| Eam1104I | CTCTTC | 3 cut(s) | 269, 381, 588 |
| EarI | CTCTTC | 3 cut(s) | 269, 381, 588 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 1 cut(s) | 227 |
| Eco24I | GRGCYC | 2 cut(s) | 323, 348 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| Eco88I | CYCGRG | 1 cut(s) | 510 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoRI | GAATTC | 1 cut(s) | 298 |
| EcoRII | CCWGG | 1 cut(s) | 469 |
| EcoT14I | CCWWGG | 1 cut(s) | 227 |
| EcoT22I | ATGCAT | 1 cut(s) | 97 |
| EcoT38I | GRGCYC | 2 cut(s) | 323, 348 |
| ErhI | CCWWGG | 1 cut(s) | 227 |
| FaeI | CATG | 5 cut(s) | 68, 95, 107, 166, 211 |
| FaqI | GGGAC | 3 cut(s) | 169, 462, 581 |
| FatI | CATG | 5 cut(s) | 64, 91, 103, 162, 207 |
| Fnu4HI | GCNGC | 5 cut(s) | 47, 245, 392, 422, 425 |
| FokI | GGATG | 5 cut(s) | 98, 190, 202, 413, 539 |
| FriOI | GRGCYC | 2 cut(s) | 323, 348 |
| Fsp4HI | GCNGC | 5 cut(s) | 47, 245, 392, 422, 425 |
| FspBI | CTAG | 1 cut(s) | 228 |
| GluI | GCNGC | 5 cut(s) | 47, 245, 392, 422, 425 |
| GsaI | CCCAGC | 1 cut(s) | 633 |
| HapII | CCGG | 1 cut(s) | 32 |
| HgaI | GACGC | 1 cut(s) | 464 |
| Hin1I | GRCGYC | 1 cut(s) | 475 |
| Hin1II | CATG | 5 cut(s) | 68, 95, 107, 166, 211 |
| HincII | GTYRAC | 2 cut(s) | 118, 174 |
| HindII | GTYRAC | 2 cut(s) | 118, 174 |
| HinfI | GANTC | 1 cut(s) | 662 |
| HpaII | CCGG | 1 cut(s) | 32 |
| HphI | GGTGA | 2 cut(s) | 244, 590 |
| Hpy166II | GTNNAC | 2 cut(s) | 118, 174 |
| Hpy188I | TCNGA | 1 cut(s) | 136 |
| Hpy188III | TCNNGA | 1 cut(s) | 32 |
| Hpy8I | GTNNAC | 2 cut(s) | 118, 174 |
| Hpy99I | CGWCG | 1 cut(s) | 616 |
| HpyAV | CCTTC | 3 cut(s) | 161, 638, 680 |
| HpyCH4III | ACNGT | 1 cut(s) | 160 |
| HpyCH4IV | ACGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 7 cut(s) | 49, 64, 95, 103, 244, 394, 424 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 52, 61, 70, 529, 635 |
| HpyF3I | CTNAG | 6 cut(s) | 177, 261, 270, 351, 387, 456 |
| HpySE526I | ACGT | 1 cut(s) | 111 |
| Hsp92I | GRCGYC | 1 cut(s) | 475 |
| Hsp92II | CATG | 5 cut(s) | 68, 95, 107, 166, 211 |
| Kpn2I | TCCGGA | 1 cut(s) | 31 |
| KpnI | GGTACC | 1 cut(s) | 143 |
| Kzo9I | GATC | 5 cut(s) | 28, 78, 234, 441, 615 |
| LguI | GCTCTTC | 1 cut(s) | 381 |
| Lsp1109I | GCAGC | 5 cut(s) | 33, 256, 378, 408, 436 |
| LweI | GCATC | 3 cut(s) | 104, 212, 408 |
| MaeI | CTAG | 1 cut(s) | 228 |
| MaeII | ACGT | 1 cut(s) | 111 |
| MalI | GATC | 5 cut(s) | 30, 80, 236, 443, 617 |
| MboI | GATC | 5 cut(s) | 28, 78, 234, 441, 615 |
| MboII | GAAGA | 6 cut(s) | 286, 368, 472, 475, 550, 605 |
| MflI | RGATCY | 1 cut(s) | 28 |
| MhlI | GDGCHC | 3 cut(s) | 57, 323, 348 |
| MluCI | AATT | 2 cut(s) | 184, 298 |
| MlyI | GAGTC | 1 cut(s) | 671 |
| MnlI | CCTC | 7 cut(s) | 100, 130, 172, 391, 555, 558, 649 |
| Mph1103I | ATGCAT | 1 cut(s) | 97 |
| MroI | TCCGGA | 1 cut(s) | 31 |
| MseI | TTAA | 3 cut(s) | 183, 192, 691 |
| MslI | CAYNNNNRTG | 1 cut(s) | 432 |
| MspI | CCGG | 1 cut(s) | 32 |
| MspR9I | CCNGG | 1 cut(s) | 471 |
| MvaI | CCWGG | 1 cut(s) | 471 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 52, 61, 70, 529, 635 |
| NdeII | GATC | 5 cut(s) | 28, 78, 234, 441, 615 |
| NlaIII | CATG | 5 cut(s) | 68, 95, 107, 166, 211 |
| NlaIV | GGNNCC | 2 cut(s) | 30, 141 |
| NsiI | ATGCAT | 1 cut(s) | 97 |
| PaeR7I | CTCGAG | 1 cut(s) | 510 |
| PaqCI | CACCTGC | 2 cut(s) | 40, 385 |
| PciSI | GCTCTTC | 1 cut(s) | 381 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 620 |
| PflFI | GACNNNGTC | 1 cut(s) | 113 |
| PkrI | GCNGC | 5 cut(s) | 48, 246, 393, 423, 426 |
| PleI | GAGTC | 1 cut(s) | 670 |
| PpsI | GAGTC | 1 cut(s) | 670 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| Psp6I | CCWGG | 1 cut(s) | 469 |
| PspFI | CCCAGC | 1 cut(s) | 629 |
| PspGI | CCWGG | 1 cut(s) | 469 |
| PspN4I | GGNNCC | 2 cut(s) | 30, 141 |
| PspXI | VCTCGAGB | 1 cut(s) | 510 |
| PstI | CTGCAG | 3 cut(s) | 51, 396, 426 |
| PsuI | RGATCY | 1 cut(s) | 28 |
| PsyI | GACNNNGTC | 1 cut(s) | 113 |
| RsaI | GTAC | 2 cut(s) | 141, 610 |
| RsaNI | GTAC | 2 cut(s) | 140, 609 |
| RseI | CAYNNNNRTG | 1 cut(s) | 432 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SapI | GCTCTTC | 1 cut(s) | 381 |
| SaqAI | TTAA | 3 cut(s) | 183, 192, 691 |
| SatI | GCNGC | 5 cut(s) | 47, 245, 392, 422, 425 |
| Sau3AI | GATC | 5 cut(s) | 28, 78, 234, 441, 615 |
| SchI | GAGTC | 1 cut(s) | 671 |
| ScrFI | CCNGG | 1 cut(s) | 471 |
| SduI | GDGCHC | 3 cut(s) | 57, 323, 348 |
| SfaNI | GCATC | 3 cut(s) | 104, 212, 408 |
| SfcI | CTRYAG | 3 cut(s) | 47, 392, 422 |
| Sfr274I | CTCGAG | 1 cut(s) | 510 |
| SlaI | CTCGAG | 1 cut(s) | 510 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 432 |
| SmlI | CTYRAG | 1 cut(s) | 510 |
| SmoI | CTYRAG | 1 cut(s) | 510 |
| Sse9I | AATT | 2 cut(s) | 184, 298 |
| SspMI | CTAG | 1 cut(s) | 228 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StyD4I | CCNGG | 1 cut(s) | 469 |
| StyI | CCWWGG | 1 cut(s) | 227 |
| TaaI | ACNGT | 1 cut(s) | 160 |
| TaiI | ACGT | 1 cut(s) | 114 |
| TaqI | TCGA | 4 cut(s) | 57, 302, 323, 511 |
| TasI | AATT | 2 cut(s) | 184, 298 |
| Tru1I | TTAA | 3 cut(s) | 183, 192, 691 |
| Tru9I | TTAA | 3 cut(s) | 183, 192, 691 |
| TscAI | CASTG | 1 cut(s) | 391 |
| TseI | GCWGC | 5 cut(s) | 46, 244, 391, 421, 424 |
| TspDTI | ATGAA | 1 cut(s) | 417 |
| TspRI | CASTG | 1 cut(s) | 391 |
| Tth111I | GACNNNGTC | 1 cut(s) | 113 |
| XapI | RAATTY | 1 cut(s) | 298 |
| XhoI | CTCGAG | 1 cut(s) | 510 |
| XmaJI | CCTAGG | 1 cut(s) | 227 |
| XspI | CTAG | 1 cut(s) | 228 |
| Zsp2I | ATGCAT | 1 cut(s) | 97 |