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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 166 |
| AccB1I | GGYRCC | 3 cut(s) | 151, 166, 293 |
| AccBSI | CCGCTC | 1 cut(s) | 205 |
| AciI | CCGC | 2 cut(s) | 205, 312 |
| AclWI | GGATC | 3 cut(s) | 94, 275, 379 |
| AcuI | CTGAAG | 2 cut(s) | 393, 444 |
| AfaI | GTAC | 3 cut(s) | 91, 168, 357 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 290, 332, 344 |
| AgeI | ACCGGT | 1 cut(s) | 163 |
| AgsI | TTSAA | 1 cut(s) | 226 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 273 |
| AhlI | ACTAGT | 1 cut(s) | 8 |
| AluBI | AGCT | 3 cut(s) | 32, 59, 251 |
| AluI | AGCT | 3 cut(s) | 32, 59, 251 |
| Alw21I | GWGCWC | 2 cut(s) | 61, 82 |
| Alw26I | GTCTC | 1 cut(s) | 235 |
| AlwI | GGATC | 3 cut(s) | 94, 275, 379 |
| ApeKI | GCWGC | 1 cut(s) | 429 |
| AsiGI | ACCGGT | 1 cut(s) | 163 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 240, 438 |
| Asp718I | GGTACC | 1 cut(s) | 166 |
| AspS9I | GGNCC | 1 cut(s) | 335 |
| AsuHPI | GGTGA | 1 cut(s) | 124 |
| AvaII | GGWCC | 1 cut(s) | 335 |
| BanI | GGYRCC | 3 cut(s) | 151, 166, 293 |
| BanII | GRGCYC | 1 cut(s) | 61 |
| BbsI | GAAGAC | 1 cut(s) | 312 |
| Bbv12I | GWGCWC | 2 cut(s) | 61, 82 |
| BbvI | GCAGC | 1 cut(s) | 416 |
| BccI | CCATC | 1 cut(s) | 11 |
| BceAI | ACGGC | 1 cut(s) | 325 |
| BciVI | GTATCC | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 235 |
| BcuI | ACTAGT | 1 cut(s) | 8 |
| BfaI | CTAG | 5 cut(s) | 9, 23, 219, 248, 290 |
| BfuI | GTATCC | 1 cut(s) | 181 |
| BisI | GCNGC | 2 cut(s) | 313, 430 |
| BlsI | GCNGC | 2 cut(s) | 314, 431 |
| Bme18I | GGWCC | 1 cut(s) | 335 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 273 |
| BmgT120I | GGNCC | 1 cut(s) | 335 |
| BmiI | GGNNCC | 3 cut(s) | 153, 168, 295 |
| BmrI | ACTGGG | 1 cut(s) | 148 |
| BmuI | ACTGGG | 1 cut(s) | 148 |
| BpiI | GAAGAC | 1 cut(s) | 312 |
| BsaI | GGTCTC | 1 cut(s) | 235 |
| BsaJI | CCNNGG | 1 cut(s) | 147 |
| BsaWI | WCCGGW | 1 cut(s) | 163 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 290, 332, 344 |
| Bse118I | RCCGGY | 1 cut(s) | 163 |
| Bse1I | ACTGG | 3 cut(s) | 108, 143, 384 |
| BseDI | CCNNGG | 1 cut(s) | 147 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 290, 332, 344 |
| BseMII | CTCAG | 2 cut(s) | 84, 246 |
| BseNI | ACTGG | 3 cut(s) | 108, 143, 384 |
| BseXI | GCAGC | 1 cut(s) | 416 |
| BshNI | GGYRCC | 3 cut(s) | 151, 166, 293 |
| BshTI | ACCGGT | 1 cut(s) | 163 |
| BsiHKAI | GWGCWC | 2 cut(s) | 61, 82 |
| BsiSI | CCGG | 1 cut(s) | 164 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 290, 332, 344 |
| BsmAI | GTCTC | 1 cut(s) | 235 |
| Bso31I | GGTCTC | 1 cut(s) | 235 |
| Bsp1286I | GDGCHC | 2 cut(s) | 61, 82 |
| Bsp143I | GATC | 4 cut(s) | 99, 280, 371, 414 |
| Bsp19I | CCATGG | 1 cut(s) | 147 |
| BspACI | CCGC | 2 cut(s) | 205, 312 |
| BspCNI | CTCAG | 2 cut(s) | 85, 245 |
| BspHI | TCATGA | 1 cut(s) | 277 |
| BspLI | GGNNCC | 3 cut(s) | 153, 168, 295 |
| BspPI | GGATC | 3 cut(s) | 94, 275, 379 |
| BspT107I | GGYRCC | 3 cut(s) | 151, 166, 293 |
| BspTNI | GGTCTC | 1 cut(s) | 235 |
| BsrBI | CCGCTC | 1 cut(s) | 205 |
| BsrFI | RCCGGY | 1 cut(s) | 163 |
| BsrI | ACTGG | 3 cut(s) | 108, 143, 384 |
| BssAI | RCCGGY | 1 cut(s) | 163 |
| BssECI | CCNNGG | 1 cut(s) | 147 |
| BssMI | GATC | 4 cut(s) | 99, 280, 371, 414 |
| BssT1I | CCWWGG | 1 cut(s) | 147 |
| Bst4CI | ACNGT | 1 cut(s) | 398 |
| BstDEI | CTNAG | 2 cut(s) | 93, 232 |
| BstDSI | CCRYGG | 1 cut(s) | 147 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 288, 330, 342 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstKTI | GATC | 4 cut(s) | 102, 283, 374, 417 |
| BstMAI | GTCTC | 1 cut(s) | 235 |
| BstMBI | GATC | 4 cut(s) | 99, 280, 371, 414 |
| BstV1I | GCAGC | 1 cut(s) | 416 |
| BstV2I | GAAGAC | 1 cut(s) | 312 |
| BstX2I | RGATCY | 2 cut(s) | 99, 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 199 |
| BstYI | RGATCY | 2 cut(s) | 99, 371 |
| BsuI | GTATCC | 1 cut(s) | 181 |
| BtgI | CCRYGG | 1 cut(s) | 147 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| BtsIMutI | CAGTG | 1 cut(s) | 417 |
| CciI | TCATGA | 1 cut(s) | 277 |
| Cfr10I | RCCGGY | 1 cut(s) | 163 |
| Cfr13I | GGNCC | 1 cut(s) | 335 |
| CseI | GACGC | 1 cut(s) | 27 |
| Csp6I | GTAC | 3 cut(s) | 90, 167, 356 |
| CspAI | ACCGGT | 1 cut(s) | 163 |
| CviAII | CATG | 5 cut(s) | 35, 47, 74, 148, 278 |
| CviJI | RGCY | 6 cut(s) | 22, 32, 59, 143, 251, 429 |
| CviKI_1 | RGCY | 6 cut(s) | 22, 32, 59, 143, 251, 429 |
| CviQI | GTAC | 3 cut(s) | 90, 167, 356 |
| DdeI | CTNAG | 2 cut(s) | 93, 232 |
| DpnI | GATC | 4 cut(s) | 101, 282, 373, 416 |
| DpnII | GATC | 4 cut(s) | 99, 280, 371, 414 |
| DriI | GACNNNNNGTC | 1 cut(s) | 273 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 273 |
| Ecl136II | GAGCTC | 1 cut(s) | 59 |
| Eco130I | CCWWGG | 1 cut(s) | 147 |
| Eco24I | GRGCYC | 1 cut(s) | 61 |
| Eco31I | GGTCTC | 1 cut(s) | 235 |
| Eco32I | GATATC | 1 cut(s) | 350 |
| Eco47I | GGWCC | 1 cut(s) | 335 |
| Eco53kI | GAGCTC | 1 cut(s) | 59 |
| Eco57I | CTGAAG | 2 cut(s) | 393, 444 |
| EcoICRI | GAGCTC | 1 cut(s) | 59 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 288, 330, 342 |
| EcoO109I | RGGNCCY | 1 cut(s) | 335 |
| EcoRV | GATATC | 1 cut(s) | 350 |
| EcoT14I | CCWWGG | 1 cut(s) | 147 |
| EcoT38I | GRGCYC | 1 cut(s) | 61 |
| ErhI | CCWWGG | 1 cut(s) | 147 |
| FaeI | CATG | 5 cut(s) | 38, 50, 77, 151, 281 |
| FaiI | YATR | 9 cut(s) | 36, 48, 53, 68, 75, 149, 214, 279, 321 |
| FatI | CATG | 5 cut(s) | 34, 46, 73, 147, 277 |
| Fnu4HI | GCNGC | 2 cut(s) | 313, 430 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 1 cut(s) | 61 |
| Fsp4HI | GCNGC | 2 cut(s) | 313, 430 |
| FspBI | CTAG | 5 cut(s) | 9, 23, 219, 248, 290 |
| GluI | GCNGC | 2 cut(s) | 313, 430 |
| HapII | CCGG | 1 cut(s) | 164 |
| HgaI | GACGC | 1 cut(s) | 27 |
| Hin1II | CATG | 5 cut(s) | 38, 50, 77, 151, 281 |
| HpaII | CCGG | 1 cut(s) | 164 |
| HphI | GGTGA | 1 cut(s) | 124 |
| Hpy188I | TCNGA | 1 cut(s) | 235 |
| Hpy188III | TCNNGA | 2 cut(s) | 265, 278 |
| HpyAV | CCTTC | 5 cut(s) | 93, 165, 220, 419, 455 |
| HpyCH4III | ACNGT | 1 cut(s) | 398 |
| HpyCH4IV | ACGT | 1 cut(s) | 255 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 2 cut(s) | 93, 232 |
| HpySE526I | ACGT | 1 cut(s) | 255 |
| Hsp92II | CATG | 5 cut(s) | 38, 50, 77, 151, 281 |
| KpnI | GGTACC | 1 cut(s) | 170 |
| Kzo9I | GATC | 4 cut(s) | 99, 280, 371, 414 |
| LmnI | GCTCC | 3 cut(s) | 56, 85, 202 |
| LpnPI | CCDG | 6 cut(s) | 72, 121, 124, 177, 330, 397 |
| Lsp1109I | GCAGC | 1 cut(s) | 416 |
| MaeI | CTAG | 5 cut(s) | 9, 23, 219, 248, 290 |
| MaeII | ACGT | 1 cut(s) | 255 |
| MaeIII | GTNAC | 2 cut(s) | 39, 116 |
| MalI | GATC | 4 cut(s) | 101, 282, 373, 416 |
| MbiI | CCGCTC | 1 cut(s) | 205 |
| MboI | GATC | 4 cut(s) | 99, 280, 371, 414 |
| MboII | GAAGA | 4 cut(s) | 236, 317, 399, 431 |
| MflI | RGATCY | 2 cut(s) | 99, 371 |
| MhlI | GDGCHC | 2 cut(s) | 61, 82 |
| MluCI | AATT | 4 cut(s) | 124, 173, 209, 236 |
| MmeI | TCCRAC | 1 cut(s) | 346 |
| MnlI | CCTC | 3 cut(s) | 113, 272, 362 |
| MroXI | GAANNNNTTC | 2 cut(s) | 240, 438 |
| MslI | CAYNNNNRTG | 1 cut(s) | 276 |
| MspI | CCGG | 1 cut(s) | 164 |
| NcoI | CCATGG | 1 cut(s) | 147 |
| NdeII | GATC | 4 cut(s) | 99, 280, 371, 414 |
| NlaIII | CATG | 5 cut(s) | 38, 50, 77, 151, 281 |
| NlaIV | GGNNCC | 3 cut(s) | 153, 168, 295 |
| NmuCI | GTSAC | 2 cut(s) | 39, 116 |
| PagI | TCATGA | 1 cut(s) | 277 |
| PdmI | GAANNNNTTC | 2 cut(s) | 240, 438 |
| PinAI | ACCGGT | 1 cut(s) | 163 |
| PkrI | GCNGC | 2 cut(s) | 314, 431 |
| PpuMI | RGGWCCY | 1 cut(s) | 335 |
| Psp124BI | GAGCTC | 1 cut(s) | 61 |
| Psp5II | RGGWCCY | 1 cut(s) | 335 |
| PspN4I | GGNNCC | 3 cut(s) | 153, 168, 295 |
| PspPI | GGNCC | 1 cut(s) | 335 |
| PspPPI | RGGWCCY | 1 cut(s) | 335 |
| PsuI | RGATCY | 2 cut(s) | 99, 371 |
| RsaI | GTAC | 3 cut(s) | 91, 168, 357 |
| RsaNI | GTAC | 3 cut(s) | 90, 167, 356 |
| RseI | CAYNNNNRTG | 1 cut(s) | 276 |
| SacI | GAGCTC | 1 cut(s) | 61 |
| SatI | GCNGC | 2 cut(s) | 313, 430 |
| Sau3AI | GATC | 4 cut(s) | 99, 280, 371, 414 |
| Sau96I | GGNCC | 1 cut(s) | 335 |
| SduI | GDGCHC | 2 cut(s) | 61, 82 |
| SetI | ASST | 9 cut(s) | 34, 61, 172, 201, 231, 253, 258, 295, 340 |
| SinI | GGWCC | 1 cut(s) | 335 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 276 |
| SpeI | ACTAGT | 1 cut(s) | 8 |
| Sse9I | AATT | 4 cut(s) | 124, 173, 209, 236 |
| SsiI | CCGC | 2 cut(s) | 205, 312 |
| SspMI | CTAG | 5 cut(s) | 9, 23, 219, 248, 290 |
| SstI | GAGCTC | 1 cut(s) | 61 |
| StyI | CCWWGG | 1 cut(s) | 147 |
| TaaI | ACNGT | 1 cut(s) | 398 |
| TaiI | ACGT | 1 cut(s) | 258 |
| TaqI | TCGA | 2 cut(s) | 352, 401 |
| TasI | AATT | 4 cut(s) | 124, 173, 209, 236 |
| TatI | WGTACW | 1 cut(s) | 355 |
| TauI | GCSGC | 1 cut(s) | 315 |
| TscAI | CASTG | 1 cut(s) | 417 |
| TseFI | GTSAC | 2 cut(s) | 39, 116 |
| TseI | GCWGC | 1 cut(s) | 429 |
| Tsp45I | GTSAC | 2 cut(s) | 39, 116 |
| TspGWI | ACGGA | 2 cut(s) | 135, 438 |
| TspRI | CASTG | 1 cut(s) | 417 |
| VpaK11BI | GGWCC | 1 cut(s) | 335 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 288, 330, 342 |
| XmnI | GAANNNNTTC | 2 cut(s) | 240, 438 |
| XspI | CTAG | 5 cut(s) | 9, 23, 219, 248, 290 |