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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 520 |
| AccB1I | GGYRCC | 1 cut(s) | 520 |
| AccII | CGCG | 2 cut(s) | 195, 245 |
| AciI | CCGC | 5 cut(s) | 21, 158, 193, 285, 615 |
| AclI | AACGTT | 1 cut(s) | 231 |
| AclWI | GGATC | 1 cut(s) | 615 |
| AcoI | YGGCCR | 2 cut(s) | 182, 616 |
| AcuI | CTGAAG | 3 cut(s) | 131, 618, 831 |
| AcyI | GRCGYC | 2 cut(s) | 89, 299 |
| AfaI | GTAC | 2 cut(s) | 202, 522 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 517, 586 |
| AflIII | ACRYGT | 1 cut(s) | 268 |
| AgsI | TTSAA | 3 cut(s) | 236, 542, 725 |
| AhlI | ACTAGT | 1 cut(s) | 203 |
| AjnI | CCWGG | 1 cut(s) | 373 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 829, 861 |
| AluBI | AGCT | 7 cut(s) | 128, 151, 311, 545, 822, 845, 878 |
| AluI | AGCT | 7 cut(s) | 128, 151, 311, 545, 822, 845, 878 |
| Alw26I | GTCTC | 1 cut(s) | 70 |
| AlwI | GGATC | 1 cut(s) | 615 |
| AoxI | GGCC | 4 cut(s) | 182, 371, 401, 616 |
| ApeKI | GCWGC | 2 cut(s) | 282, 473 |
| Asp718I | GGTACC | 1 cut(s) | 520 |
| AspS9I | GGNCC | 1 cut(s) | 371 |
| AsuC2I | CCSGG | 1 cut(s) | 654 |
| AsuHPI | GGTGA | 1 cut(s) | 824 |
| BanI | GGYRCC | 1 cut(s) | 520 |
| BanII | GRGCYC | 2 cut(s) | 457, 835 |
| BbvI | GCAGC | 2 cut(s) | 294, 460 |
| BccI | CCATC | 5 cut(s) | 215, 241, 272, 454, 863 |
| BceAI | ACGGC | 2 cut(s) | 169, 890 |
| BciT130I | CCWGG | 1 cut(s) | 375 |
| BcnI | CCSGG | 1 cut(s) | 654 |
| BcoDI | GTCTC | 1 cut(s) | 70 |
| BcuI | ACTAGT | 1 cut(s) | 203 |
| BfaI | CTAG | 4 cut(s) | 125, 152, 204, 407 |
| BisI | GCNGC | 4 cut(s) | 283, 286, 474, 616 |
| BlsI | GCNGC | 4 cut(s) | 284, 287, 475, 617 |
| Bme1390I | CCNGG | 2 cut(s) | 375, 654 |
| BmgT120I | GGNCC | 1 cut(s) | 371 |
| BmiI | GGNNCC | 4 cut(s) | 346, 456, 522, 832 |
| BmrFI | CCNGG | 2 cut(s) | 375, 654 |
| BmsI | GCATC | 1 cut(s) | 280 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 50, 82, 329, 361 |
| BpuMI | CCSGG | 1 cut(s) | 654 |
| BsaHI | GRCGYC | 2 cut(s) | 89, 299 |
| BsaI | GGTCTC | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 2 cut(s) | 357, 906 |
| BsaWI | WCCGGW | 1 cut(s) | 699 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 517, 586 |
| Bse1I | ACTGG | 1 cut(s) | 48 |
| BseBI | CCWGG | 1 cut(s) | 375 |
| BseDI | CCNNGG | 2 cut(s) | 357, 906 |
| BseGI | GGATG | 2 cut(s) | 874, 892 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 517, 586 |
| BseMII | CTCAG | 2 cut(s) | 624, 625 |
| BseNI | ACTGG | 1 cut(s) | 48 |
| BseRI | GAGGAG | 2 cut(s) | 74, 350 |
| BseXI | GCAGC | 2 cut(s) | 294, 460 |
| BseYI | CCCAGC | 2 cut(s) | 307, 878 |
| BsgI | GTGCAG | 1 cut(s) | 509 |
| Bsh1236I | CGCG | 2 cut(s) | 195, 245 |
| BshFI | GGCC | 4 cut(s) | 184, 373, 403, 618 |
| BshNI | GGYRCC | 1 cut(s) | 520 |
| BsiSI | CCGG | 2 cut(s) | 654, 700 |
| BslFI | GGGAC | 1 cut(s) | 175 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 517, 586 |
| BsmAI | GTCTC | 1 cut(s) | 70 |
| BsmFI | GGGAC | 1 cut(s) | 175 |
| BsnI | GGCC | 4 cut(s) | 184, 373, 403, 618 |
| Bso31I | GGTCTC | 1 cut(s) | 70 |
| Bsp1286I | GDGCHC | 2 cut(s) | 457, 835 |
| Bsp143I | GATC | 1 cut(s) | 607 |
| BspACI | CCGC | 5 cut(s) | 21, 158, 193, 285, 615 |
| BspANI | GGCC | 4 cut(s) | 184, 373, 403, 618 |
| BspCNI | CTCAG | 2 cut(s) | 624, 625 |
| BspFNI | CGCG | 2 cut(s) | 195, 245 |
| BspLI | GGNNCC | 4 cut(s) | 346, 456, 522, 832 |
| BspPI | GGATC | 1 cut(s) | 615 |
| BspT107I | GGYRCC | 1 cut(s) | 520 |
| BspTNI | GGTCTC | 1 cut(s) | 70 |
| BsrI | ACTGG | 1 cut(s) | 48 |
| BssECI | CCNNGG | 2 cut(s) | 357, 906 |
| BssMI | GATC | 1 cut(s) | 607 |
| BssNI | GRCGYC | 2 cut(s) | 89, 299 |
| BssT1I | CCWWGG | 1 cut(s) | 357 |
| Bst2UI | CCWGG | 1 cut(s) | 375 |
| Bst4CI | ACNGT | 4 cut(s) | 10, 80, 137, 200 |
| BstACI | GRCGYC | 2 cut(s) | 89, 299 |
| BstDEI | CTNAG | 4 cut(s) | 611, 633, 684, 705 |
| BstDSI | CCRYGG | 1 cut(s) | 906 |
| BstF5I | GGATG | 2 cut(s) | 874, 892 |
| BstFNI | CGCG | 2 cut(s) | 195, 245 |
| BstKTI | GATC | 1 cut(s) | 610 |
| BstMAI | GTCTC | 1 cut(s) | 70 |
| BstMBI | GATC | 1 cut(s) | 607 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 370 |
| BstNI | CCWGG | 1 cut(s) | 375 |
| BstNSI | RCATGY | 1 cut(s) | 272 |
| BstSCI | CCNGG | 2 cut(s) | 373, 652 |
| BstUI | CGCG | 2 cut(s) | 195, 245 |
| BstV1I | GCAGC | 2 cut(s) | 294, 460 |
| BstX2I | RGATCY | 1 cut(s) | 607 |
| BstYI | RGATCY | 1 cut(s) | 607 |
| BsuRI | GGCC | 4 cut(s) | 184, 373, 403, 618 |
| BtgI | CCRYGG | 1 cut(s) | 906 |
| BtgZI | GCGATG | 2 cut(s) | 260, 303 |
| BtsCI | GGATG | 2 cut(s) | 874, 892 |
| BtsI | GCAGTG | 1 cut(s) | 747 |
| BtsIMutI | CAGTG | 3 cut(s) | 223, 594, 747 |
| Cfr13I | GGNCC | 1 cut(s) | 371 |
| CseI | GACGC | 3 cut(s) | 78, 288, 650 |
| Csp6I | GTAC | 2 cut(s) | 201, 521 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 583, 618 |
| CviAII | CATG | 2 cut(s) | 269, 275 |
| CviQI | GTAC | 2 cut(s) | 201, 521 |
| DdeI | CTNAG | 4 cut(s) | 611, 633, 684, 705 |
| DpnI | GATC | 1 cut(s) | 609 |
| DpnII | GATC | 1 cut(s) | 607 |
| EaeI | YGGCCR | 2 cut(s) | 182, 616 |
| Eco130I | CCWWGG | 1 cut(s) | 357 |
| Eco147I | AGGCCT | 1 cut(s) | 403 |
| Eco24I | GRGCYC | 2 cut(s) | 457, 835 |
| Eco31I | GGTCTC | 1 cut(s) | 70 |
| Eco57I | CTGAAG | 3 cut(s) | 131, 618, 831 |
| EcoRII | CCWGG | 1 cut(s) | 373 |
| EcoT14I | CCWWGG | 1 cut(s) | 357 |
| EcoT38I | GRGCYC | 2 cut(s) | 457, 835 |
| ErhI | CCWWGG | 1 cut(s) | 357 |
| FaeI | CATG | 2 cut(s) | 272, 278 |
| FaiI | YATR | 9 cut(s) | 170, 270, 276, 515, 527, 621, 731, 875, 948 |
| FaqI | GGGAC | 1 cut(s) | 175 |
| FatI | CATG | 2 cut(s) | 268, 274 |
| FauI | CCCGC | 1 cut(s) | 200 |
| Fnu4HI | GCNGC | 4 cut(s) | 283, 286, 474, 616 |
| FokI | GGATG | 2 cut(s) | 881, 899 |
| FriOI | GRGCYC | 2 cut(s) | 457, 835 |
| Fsp4HI | GCNGC | 4 cut(s) | 283, 286, 474, 616 |
| FspBI | CTAG | 4 cut(s) | 125, 152, 204, 407 |
| GluI | GCNGC | 4 cut(s) | 283, 286, 474, 616 |
| GsaI | CCCAGC | 2 cut(s) | 311, 882 |
| HaeIII | GGCC | 4 cut(s) | 184, 373, 403, 618 |
| HapII | CCGG | 2 cut(s) | 654, 700 |
| HgaI | GACGC | 3 cut(s) | 78, 288, 650 |
| Hin1I | GRCGYC | 2 cut(s) | 89, 299 |
| Hin1II | CATG | 2 cut(s) | 272, 278 |
| HincII | GTYRAC | 1 cut(s) | 576 |
| HindII | GTYRAC | 1 cut(s) | 576 |
| HindIII | AAGCTT | 1 cut(s) | 543 |
| HinfI | GANTC | 3 cut(s) | 503, 590, 780 |
| HpaII | CCGG | 2 cut(s) | 654, 700 |
| HphI | GGTGA | 1 cut(s) | 824 |
| Hpy166II | GTNNAC | 1 cut(s) | 576 |
| Hpy188I | TCNGA | 4 cut(s) | 133, 304, 459, 850 |
| Hpy188III | TCNNGA | 2 cut(s) | 93, 784 |
| Hpy8I | GTNNAC | 1 cut(s) | 576 |
| Hpy99I | CGWCG | 2 cut(s) | 141, 868 |
| HpyAV | CCTTC | 4 cut(s) | 230, 556, 760, 877 |
| HpyCH4III | ACNGT | 4 cut(s) | 10, 80, 137, 200 |
| HpyCH4IV | ACGT | 1 cut(s) | 231 |
| HpyCH4V | TGCA | 2 cut(s) | 108, 490 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 370 |
| HpyF3I | CTNAG | 4 cut(s) | 611, 633, 684, 705 |
| HpySE526I | ACGT | 1 cut(s) | 231 |
| Hsp92I | GRCGYC | 2 cut(s) | 89, 299 |
| Hsp92II | CATG | 2 cut(s) | 272, 278 |
| KpnI | GGTACC | 1 cut(s) | 524 |
| Kzo9I | GATC | 1 cut(s) | 607 |
| LmnI | GCTCC | 5 cut(s) | 350, 460, 685, 830, 842 |
| Lsp1109I | GCAGC | 2 cut(s) | 294, 460 |
| LweI | GCATC | 1 cut(s) | 280 |
| MaeI | CTAG | 4 cut(s) | 125, 152, 204, 407 |
| MaeII | ACGT | 1 cut(s) | 231 |
| MaeIII | GTNAC | 3 cut(s) | 74, 264, 742 |
| MalI | GATC | 1 cut(s) | 609 |
| MboI | GATC | 1 cut(s) | 607 |
| MboII | GAAGA | 5 cut(s) | 137, 512, 571, 737, 827 |
| MflI | RGATCY | 1 cut(s) | 607 |
| MhlI | GDGCHC | 2 cut(s) | 457, 835 |
| MluCI | AATT | 4 cut(s) | 381, 788, 851, 917 |
| MlyI | GAGTC | 2 cut(s) | 584, 789 |
| MmeI | TCCRAC | 1 cut(s) | 752 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspA1I | CMGCKG | 2 cut(s) | 285, 615 |
| MspI | CCGG | 2 cut(s) | 654, 700 |
| MspR9I | CCNGG | 2 cut(s) | 375, 654 |
| MvaI | CCWGG | 1 cut(s) | 375 |
| MvnI | CGCG | 2 cut(s) | 195, 245 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 370 |
| NciI | CCSGG | 1 cut(s) | 654 |
| NdeII | GATC | 1 cut(s) | 607 |
| NlaIII | CATG | 2 cut(s) | 272, 278 |
| NlaIV | GGNNCC | 4 cut(s) | 346, 456, 522, 832 |
| NmuCI | GTSAC | 2 cut(s) | 74, 742 |
| NspI | RCATGY | 1 cut(s) | 272 |
| PceI | AGGCCT | 1 cut(s) | 403 |
| PciI | ACATGT | 1 cut(s) | 268 |
| PfeI | GAWTC | 1 cut(s) | 503 |
| PkrI | GCNGC | 4 cut(s) | 284, 287, 475, 617 |
| PleI | GAGTC | 2 cut(s) | 584, 788 |
| PpsI | GAGTC | 2 cut(s) | 584, 788 |
| PscI | ACATGT | 1 cut(s) | 268 |
| Psp1406I | AACGTT | 1 cut(s) | 231 |
| Psp6I | CCWGG | 1 cut(s) | 373 |
| PspFI | CCCAGC | 2 cut(s) | 307, 878 |
| PspGI | CCWGG | 1 cut(s) | 373 |
| PspN4I | GGNNCC | 4 cut(s) | 346, 456, 522, 832 |
| PspPI | GGNCC | 1 cut(s) | 371 |
| PsuI | RGATCY | 1 cut(s) | 607 |
| RsaI | GTAC | 2 cut(s) | 202, 522 |
| RsaNI | GTAC | 2 cut(s) | 201, 521 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SatI | GCNGC | 4 cut(s) | 283, 286, 474, 616 |
| Sau3AI | GATC | 1 cut(s) | 607 |
| Sau96I | GGNCC | 1 cut(s) | 371 |
| SchI | GAGTC | 2 cut(s) | 584, 789 |
| ScrFI | CCNGG | 2 cut(s) | 375, 654 |
| SduI | GDGCHC | 2 cut(s) | 457, 835 |
| SfaNI | GCATC | 1 cut(s) | 280 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SpeI | ACTAGT | 1 cut(s) | 203 |
| Sse9I | AATT | 4 cut(s) | 381, 788, 851, 917 |
| SseBI | AGGCCT | 1 cut(s) | 403 |
| SsiI | CCGC | 5 cut(s) | 21, 158, 193, 285, 615 |
| SspI | AATATT | 1 cut(s) | 937 |
| SspMI | CTAG | 4 cut(s) | 125, 152, 204, 407 |
| StuI | AGGCCT | 1 cut(s) | 403 |
| StyD4I | CCNGG | 2 cut(s) | 373, 652 |
| StyI | CCWWGG | 1 cut(s) | 357 |
| TaaI | ACNGT | 4 cut(s) | 10, 80, 137, 200 |
| TaiI | ACGT | 1 cut(s) | 234 |
| TaqI | TCGA | 2 cut(s) | 857, 863 |
| TaqII | GACCGA | 1 cut(s) | 110 |
| TasI | AATT | 4 cut(s) | 381, 788, 851, 917 |
| TatI | WGTACW | 1 cut(s) | 200 |
| TauI | GCSGC | 2 cut(s) | 288, 618 |
| TfiI | GAWTC | 1 cut(s) | 503 |
| TscAI | CASTG | 3 cut(s) | 223, 601, 747 |
| TseFI | GTSAC | 2 cut(s) | 74, 742 |
| TseI | GCWGC | 2 cut(s) | 282, 473 |
| Tsp45I | GTSAC | 2 cut(s) | 74, 742 |
| TspDTI | ATGAA | 3 cut(s) | 185, 572, 903 |
| TspGWI | ACGGA | 1 cut(s) | 881 |
| TspRI | CASTG | 3 cut(s) | 223, 601, 747 |
| XceI | RCATGY | 1 cut(s) | 272 |
| XspI | CTAG | 4 cut(s) | 125, 152, 204, 407 |