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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 22 |
| AccBSI | CCGCTC | 1 cut(s) | 123 |
| AccIII | TCCGGA | 1 cut(s) | 235 |
| AciI | CCGC | 2 cut(s) | 123, 251 |
| AclWI | GGATC | 2 cut(s) | 22, 47 |
| AcsI | RAATTY | 1 cut(s) | 146 |
| AcyI | GRCGYC | 1 cut(s) | 331 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 80 |
| AgsI | TTSAA | 2 cut(s) | 43, 140 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 254, 286 |
| AluBI | AGCT | 4 cut(s) | 13, 92, 223, 416 |
| AluI | AGCT | 4 cut(s) | 13, 92, 223, 416 |
| Alw26I | GTCTC | 2 cut(s) | 310, 461 |
| AlwI | GGATC | 2 cut(s) | 22, 47 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 166 |
| Aor13HI | TCCGGA | 1 cut(s) | 235 |
| ApeKI | GCWGC | 1 cut(s) | 455 |
| ApoI | RAATTY | 1 cut(s) | 146 |
| AspA2I | CCTAGG | 1 cut(s) | 311 |
| AspLEI | GCGC | 1 cut(s) | 166 |
| AspS9I | GGNCC | 1 cut(s) | 104 |
| AsuHPI | GGTGA | 3 cut(s) | 300, 552, 563 |
| AvaII | GGWCC | 1 cut(s) | 104 |
| AvrII | CCTAGG | 1 cut(s) | 311 |
| BanI | GGYRCC | 1 cut(s) | 22 |
| BbsI | GAAGAC | 1 cut(s) | 50 |
| BbvCI | CCTCAGC | 1 cut(s) | 459 |
| BbvI | GCAGC | 1 cut(s) | 442 |
| BccI | CCATC | 1 cut(s) | 13 |
| BceAI | ACGGC | 1 cut(s) | 500 |
| BcoDI | GTCTC | 2 cut(s) | 310, 461 |
| BfaI | CTAG | 2 cut(s) | 192, 312 |
| BfoI | RGCGCY | 1 cut(s) | 167 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 213 |
| BisI | GCNGC | 1 cut(s) | 456 |
| BlnI | CCTAGG | 1 cut(s) | 311 |
| BlsI | GCNGC | 1 cut(s) | 457 |
| Bme18I | GGWCC | 1 cut(s) | 104 |
| BmgT120I | GGNCC | 1 cut(s) | 104 |
| BmiI | GGNNCC | 3 cut(s) | 24, 105, 510 |
| BmrI | ACTGGG | 1 cut(s) | 480 |
| BmuI | ACTGGG | 1 cut(s) | 480 |
| BpiI | GAAGAC | 1 cut(s) | 50 |
| Bpu10I | CCTNAGC | 1 cut(s) | 459 |
| BsaHI | GRCGYC | 1 cut(s) | 331 |
| BsaI | GGTCTC | 1 cut(s) | 310 |
| BsaJI | CCNNGG | 2 cut(s) | 270, 311 |
| BsaWI | WCCGGW | 1 cut(s) | 235 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 80 |
| Bse118I | RCCGGY | 2 cut(s) | 73, 207 |
| Bse1I | ACTGG | 3 cut(s) | 107, 306, 475 |
| Bse3DI | GCAATG | 1 cut(s) | 204 |
| BseAI | TCCGGA | 1 cut(s) | 235 |
| BseDI | CCNNGG | 2 cut(s) | 270, 311 |
| BseGI | GGATG | 1 cut(s) | 469 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 80 |
| BseMI | GCAATG | 1 cut(s) | 204 |
| BseMII | CTCAG | 1 cut(s) | 450 |
| BseNI | ACTGG | 3 cut(s) | 107, 306, 475 |
| BseRI | GAGGAG | 1 cut(s) | 518 |
| BseXI | GCAGC | 1 cut(s) | 442 |
| BshNI | GGYRCC | 1 cut(s) | 22 |
| BsiSI | CCGG | 3 cut(s) | 74, 208, 236 |
| BslFI | GGGAC | 1 cut(s) | 18 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 80 |
| BsmAI | GTCTC | 2 cut(s) | 310, 461 |
| BsmFI | GGGAC | 1 cut(s) | 18 |
| Bso31I | GGTCTC | 1 cut(s) | 310 |
| Bsp13I | TCCGGA | 1 cut(s) | 235 |
| Bsp143I | GATC | 2 cut(s) | 27, 52 |
| BspACI | CCGC | 2 cut(s) | 123, 251 |
| BspCNI | CTCAG | 1 cut(s) | 451 |
| BspEI | TCCGGA | 1 cut(s) | 235 |
| BspHI | TCATGA | 1 cut(s) | 111 |
| BspLI | GGNNCC | 3 cut(s) | 24, 105, 510 |
| BspPI | GGATC | 2 cut(s) | 22, 47 |
| BspT107I | GGYRCC | 1 cut(s) | 22 |
| BspTNI | GGTCTC | 1 cut(s) | 310 |
| BsrBI | CCGCTC | 1 cut(s) | 123 |
| BsrDI | GCAATG | 1 cut(s) | 204 |
| BsrFI | RCCGGY | 2 cut(s) | 73, 207 |
| BsrI | ACTGG | 3 cut(s) | 107, 306, 475 |
| BssAI | RCCGGY | 2 cut(s) | 73, 207 |
| BssECI | CCNNGG | 2 cut(s) | 270, 311 |
| BssMI | GATC | 2 cut(s) | 27, 52 |
| BssNI | GRCGYC | 1 cut(s) | 331 |
| BssT1I | CCWWGG | 2 cut(s) | 270, 311 |
| Bst4CI | ACNGT | 1 cut(s) | 39 |
| Bst6I | CTCTTC | 3 cut(s) | 123, 372, 495 |
| BstACI | GRCGYC | 1 cut(s) | 331 |
| BstC8I | GCNNGC | 1 cut(s) | 162 |
| BstDEI | CTNAG | 2 cut(s) | 226, 459 |
| BstF5I | GGATG | 1 cut(s) | 469 |
| BstH2I | RGCGCY | 1 cut(s) | 167 |
| BstHHI | GCGC | 1 cut(s) | 166 |
| BstKTI | GATC | 2 cut(s) | 30, 55 |
| BstMAI | GTCTC | 2 cut(s) | 310, 461 |
| BstMBI | GATC | 2 cut(s) | 27, 52 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 213, 455 |
| BstV1I | GCAGC | 1 cut(s) | 442 |
| BstV2I | GAAGAC | 1 cut(s) | 50 |
| BtsCI | GGATG | 1 cut(s) | 469 |
| Cac8I | GCNNGC | 1 cut(s) | 162 |
| CaiI | CAGNNNCTG | 1 cut(s) | 166 |
| CciI | TCATGA | 1 cut(s) | 111 |
| CfoI | GCGC | 1 cut(s) | 166 |
| Cfr10I | RCCGGY | 2 cut(s) | 73, 207 |
| Cfr13I | GGNCC | 1 cut(s) | 104 |
| CseI | GACGC | 1 cut(s) | 320 |
| CviAII | CATG | 3 cut(s) | 112, 157, 476 |
| CviJI | RGCY | 9 cut(s) | 13, 73, 92, 98, 191, 207, 223, 416, 509 |
| CviKI_1 | RGCY | 9 cut(s) | 13, 73, 92, 98, 191, 207, 223, 416, 509 |
| DdeI | CTNAG | 2 cut(s) | 226, 459 |
| DpnI | GATC | 2 cut(s) | 29, 54 |
| DpnII | GATC | 2 cut(s) | 27, 52 |
| Eam1104I | CTCTTC | 3 cut(s) | 123, 372, 495 |
| EarI | CTCTTC | 3 cut(s) | 123, 372, 495 |
| Eco130I | CCWWGG | 2 cut(s) | 270, 311 |
| Eco31I | GGTCTC | 1 cut(s) | 310 |
| Eco47I | GGWCC | 1 cut(s) | 104 |
| EcoT14I | CCWWGG | 2 cut(s) | 270, 311 |
| ErhI | CCWWGG | 2 cut(s) | 270, 311 |
| FaeI | CATG | 3 cut(s) | 115, 160, 479 |
| FaiI | YATR | 4 cut(s) | 113, 158, 399, 477 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 209, 241 |
| FaqI | GGGAC | 1 cut(s) | 18 |
| FatI | CATG | 3 cut(s) | 111, 156, 475 |
| FauI | CCCGC | 1 cut(s) | 116 |
| Fnu4HI | GCNGC | 1 cut(s) | 456 |
| FokI | GGATG | 1 cut(s) | 476 |
| Fsp4HI | GCNGC | 1 cut(s) | 456 |
| FspBI | CTAG | 2 cut(s) | 192, 312 |
| GlaI | GCGC | 1 cut(s) | 165 |
| GluI | GCNGC | 1 cut(s) | 456 |
| HaeII | RGCGCY | 1 cut(s) | 167 |
| HapII | CCGG | 3 cut(s) | 74, 208, 236 |
| HgaI | GACGC | 1 cut(s) | 320 |
| HhaI | GCGC | 1 cut(s) | 166 |
| Hin1I | GRCGYC | 1 cut(s) | 331 |
| Hin1II | CATG | 3 cut(s) | 115, 160, 479 |
| Hin6I | GCGC | 1 cut(s) | 164 |
| HinP1I | GCGC | 1 cut(s) | 164 |
| HindIII | AAGCTT | 1 cut(s) | 90 |
| HinfI | GANTC | 4 cut(s) | 46, 239, 388, 428 |
| HpaII | CCGG | 3 cut(s) | 74, 208, 236 |
| HphI | GGTGA | 3 cut(s) | 300, 552, 563 |
| Hpy188I | TCNGA | 2 cut(s) | 336, 528 |
| Hpy188III | TCNNGA | 3 cut(s) | 50, 112, 236 |
| HpyAV | CCTTC | 3 cut(s) | 331, 542, 573 |
| HpyCH4III | ACNGT | 1 cut(s) | 39 |
| HpyCH4V | TGCA | 3 cut(s) | 160, 280, 533 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 213, 455 |
| HpyF3I | CTNAG | 2 cut(s) | 226, 459 |
| Hsp92I | GRCGYC | 1 cut(s) | 331 |
| Hsp92II | CATG | 3 cut(s) | 115, 160, 479 |
| HspAI | GCGC | 1 cut(s) | 164 |
| Kpn2I | TCCGGA | 1 cut(s) | 235 |
| Kzo9I | GATC | 2 cut(s) | 27, 52 |
| LmnI | GCTCC | 2 cut(s) | 120, 514 |
| Lsp1109I | GCAGC | 1 cut(s) | 442 |
| MaeI | CTAG | 2 cut(s) | 192, 312 |
| MalI | GATC | 2 cut(s) | 29, 54 |
| MbiI | CCGCTC | 1 cut(s) | 123 |
| MboI | GATC | 2 cut(s) | 27, 52 |
| MluCI | AATT | 4 cut(s) | 146, 296, 360, 579 |
| MlyI | GAGTC | 3 cut(s) | 40, 233, 422 |
| MmeI | TCCRAC | 1 cut(s) | 235 |
| MnlI | CCTC | 8 cut(s) | 171, 361, 399, 454, 490, 496, 499, 529 |
| MroI | TCCGGA | 1 cut(s) | 235 |
| MseI | TTAA | 3 cut(s) | 357, 578, 583 |
| MslI | CAYNNNNRTG | 1 cut(s) | 288 |
| MspA1I | CMGCKG | 1 cut(s) | 13 |
| MspI | CCGG | 3 cut(s) | 74, 208, 236 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 213, 455 |
| NdeII | GATC | 2 cut(s) | 27, 52 |
| NlaIII | CATG | 3 cut(s) | 115, 160, 479 |
| NlaIV | GGNNCC | 3 cut(s) | 24, 105, 510 |
| PagI | TCATGA | 1 cut(s) | 111 |
| PfeI | GAWTC | 1 cut(s) | 388 |
| PkrI | GCNGC | 1 cut(s) | 457 |
| PleI | GAGTC | 3 cut(s) | 40, 233, 422 |
| PpsI | GAGTC | 3 cut(s) | 40, 233, 422 |
| PspN4I | GGNNCC | 3 cut(s) | 24, 105, 510 |
| PspPI | GGNCC | 1 cut(s) | 104 |
| PstNI | CAGNNNCTG | 1 cut(s) | 166 |
| PvuII | CAGCTG | 1 cut(s) | 13 |
| RseI | CAYNNNNRTG | 1 cut(s) | 288 |
| SaqAI | TTAA | 3 cut(s) | 357, 578, 583 |
| SatI | GCNGC | 1 cut(s) | 456 |
| Sau3AI | GATC | 2 cut(s) | 27, 52 |
| Sau96I | GGNCC | 1 cut(s) | 104 |
| SchI | GAGTC | 3 cut(s) | 40, 233, 422 |
| SetI | ASST | 8 cut(s) | 15, 94, 225, 313, 357, 418, 553, 565 |
| SinI | GGWCC | 1 cut(s) | 104 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 288 |
| Sse9I | AATT | 4 cut(s) | 146, 296, 360, 579 |
| SsiI | CCGC | 2 cut(s) | 123, 251 |
| SspI | AATATT | 1 cut(s) | 136 |
| SspMI | CTAG | 2 cut(s) | 192, 312 |
| StyI | CCWWGG | 2 cut(s) | 270, 311 |
| TaaI | ACNGT | 1 cut(s) | 39 |
| TaqI | TCGA | 1 cut(s) | 86 |
| TasI | AATT | 4 cut(s) | 146, 296, 360, 579 |
| TfiI | GAWTC | 1 cut(s) | 388 |
| Tru1I | TTAA | 3 cut(s) | 357, 578, 583 |
| Tru9I | TTAA | 3 cut(s) | 357, 578, 583 |
| TseI | GCWGC | 1 cut(s) | 455 |
| TspDTI | ATGAA | 1 cut(s) | 128 |
| VpaK11BI | GGWCC | 1 cut(s) | 104 |
| XapI | RAATTY | 1 cut(s) | 146 |
| XmaJI | CCTAGG | 1 cut(s) | 311 |
| XspI | CTAG | 2 cut(s) | 192, 312 |