Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 394 |
| AccB1I | GGYRCC | 1 cut(s) | 46 |
| AciI | CCGC | 4 cut(s) | 178, 413, 440, 489 |
| AclWI | GGATC | 3 cut(s) | 151, 168, 206 |
| AcsI | RAATTY | 1 cut(s) | 251 |
| AcyI | GRCGYC | 1 cut(s) | 856 |
| AfaI | GTAC | 2 cut(s) | 231, 235 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 40, 195, 652 |
| AgsI | TTSAA | 4 cut(s) | 251, 771, 957, 1024 |
| AjnI | CCWGG | 3 cut(s) | 236, 463, 645 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 737, 769 |
| AluBI | AGCT | 7 cut(s) | 358, 612, 700, 738, 823, 941, 961 |
| AluI | AGCT | 7 cut(s) | 358, 612, 700, 738, 823, 941, 961 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| AlwI | GGATC | 3 cut(s) | 151, 168, 206 |
| AoxI | GGCC | 1 cut(s) | 186 |
| ApeKI | GCWGC | 2 cut(s) | 175, 697 |
| ApoI | RAATTY | 1 cut(s) | 251 |
| AspS9I | GGNCC | 2 cut(s) | 151, 580 |
| AsuHPI | GGTGA | 6 cut(s) | 91, 277, 322, 355, 825, 1070 |
| AvaII | GGWCC | 2 cut(s) | 151, 580 |
| BanI | GGYRCC | 1 cut(s) | 46 |
| BbvI | GCAGC | 2 cut(s) | 187, 709 |
| BccI | CCATC | 6 cut(s) | 17, 31, 55, 142, 463, 550 |
| BceAI | ACGGC | 1 cut(s) | 76 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 598, 632, 1029, 1063 |
| BciT130I | CCWGG | 3 cut(s) | 238, 465, 647 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 6 cut(s) | 444, 701, 851, 987, 1052, 1085 |
| BfmI | CTRYAG | 1 cut(s) | 1038 |
| BglII | AGATCT | 1 cut(s) | 446 |
| BisI | GCNGC | 3 cut(s) | 176, 441, 698 |
| BlsI | GCNGC | 3 cut(s) | 177, 442, 699 |
| Bme1390I | CCNGG | 3 cut(s) | 238, 465, 647 |
| Bme18I | GGWCC | 2 cut(s) | 151, 580 |
| BmgT120I | GGNCC | 2 cut(s) | 151, 580 |
| BmiI | GGNNCC | 2 cut(s) | 48, 550 |
| BmrFI | CCNGG | 3 cut(s) | 238, 465, 647 |
| BmsI | GCATC | 2 cut(s) | 328, 372 |
| BpmI | CTGGAG | 1 cut(s) | 243 |
| Bsa29I | ATCGAT | 1 cut(s) | 146 |
| BsaAI | YACGTR | 1 cut(s) | 233 |
| BsaHI | GRCGYC | 1 cut(s) | 856 |
| BsaI | GGTCTC | 1 cut(s) | 32 |
| BsaJI | CCNNGG | 4 cut(s) | 138, 408, 646, 888 |
| BsaWI | WCCGGW | 1 cut(s) | 271 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 40, 195, 652 |
| Bse1I | ACTGG | 1 cut(s) | 260 |
| BseBI | CCWGG | 3 cut(s) | 238, 465, 647 |
| BseCI | ATCGAT | 1 cut(s) | 146 |
| BseDI | CCNNGG | 4 cut(s) | 138, 408, 646, 888 |
| BseGI | GGATG | 1 cut(s) | 680 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 40, 195, 652 |
| BseMII | CTCAG | 2 cut(s) | 43, 92 |
| BseNI | ACTGG | 1 cut(s) | 260 |
| BseRI | GAGGAG | 3 cut(s) | 56, 392, 797 |
| BseXI | GCAGC | 2 cut(s) | 187, 709 |
| BseYI | CCCAGC | 1 cut(s) | 515 |
| BsgI | GTGCAG | 1 cut(s) | 194 |
| BshFI | GGCC | 1 cut(s) | 188 |
| BshNI | GGYRCC | 1 cut(s) | 46 |
| BshVI | ATCGAT | 1 cut(s) | 146 |
| BsiSI | CCGG | 1 cut(s) | 272 |
| BslFI | GGGAC | 3 cut(s) | 99, 437, 552 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 40, 195, 652 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 3 cut(s) | 99, 437, 552 |
| BsmI | GAATGC | 1 cut(s) | 172 |
| BsnI | GGCC | 1 cut(s) | 188 |
| Bso31I | GGTCTC | 1 cut(s) | 32 |
| Bsp143I | GATC | 5 cut(s) | 143, 160, 198, 446, 828 |
| Bsp19I | CCATGG | 1 cut(s) | 408 |
| BspACI | CCGC | 4 cut(s) | 178, 413, 440, 489 |
| BspANI | GGCC | 1 cut(s) | 188 |
| BspCNI | CTCAG | 2 cut(s) | 42, 93 |
| BspDI | ATCGAT | 1 cut(s) | 146 |
| BspLI | GGNNCC | 2 cut(s) | 48, 550 |
| BspMAI | CTGCAG | 1 cut(s) | 1042 |
| BspPI | GGATC | 3 cut(s) | 151, 168, 206 |
| BspT107I | GGYRCC | 1 cut(s) | 46 |
| BspTNI | GGTCTC | 1 cut(s) | 32 |
| BsrI | ACTGG | 1 cut(s) | 260 |
| BssECI | CCNNGG | 4 cut(s) | 138, 408, 646, 888 |
| BssMI | GATC | 5 cut(s) | 143, 160, 198, 446, 828 |
| BssNI | GRCGYC | 1 cut(s) | 856 |
| BssT1I | CCWWGG | 3 cut(s) | 138, 408, 888 |
| Bst2UI | CCWGG | 3 cut(s) | 238, 465, 647 |
| Bst4CI | ACNGT | 1 cut(s) | 391 |
| Bst6I | CTCTTC | 1 cut(s) | 515 |
| BstACI | GRCGYC | 1 cut(s) | 856 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 512 |
| BstBAI | YACGTR | 1 cut(s) | 233 |
| BstC8I | GCNNGC | 2 cut(s) | 610, 821 |
| BstDEI | CTNAG | 2 cut(s) | 29, 101 |
| BstDSI | CCRYGG | 1 cut(s) | 408 |
| BstF5I | GGATG | 1 cut(s) | 680 |
| BstKTI | GATC | 5 cut(s) | 146, 163, 201, 449, 831 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 5 cut(s) | 143, 160, 198, 446, 828 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 512, 694 |
| BstNI | CCWGG | 3 cut(s) | 238, 465, 647 |
| BstNSI | RCATGY | 1 cut(s) | 998 |
| BstSCI | CCNGG | 3 cut(s) | 236, 463, 645 |
| BstSFI | CTRYAG | 1 cut(s) | 1038 |
| BstSNI | TACGTA | 1 cut(s) | 233 |
| BstV1I | GCAGC | 2 cut(s) | 187, 709 |
| BstX2I | RGATCY | 1 cut(s) | 446 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 559, 577, 691 |
| BstYI | RGATCY | 1 cut(s) | 446 |
| Bsu15I | ATCGAT | 1 cut(s) | 146 |
| BsuRI | GGCC | 1 cut(s) | 188 |
| BsuTUI | ATCGAT | 1 cut(s) | 146 |
| BtgI | CCRYGG | 1 cut(s) | 408 |
| BtsCI | GGATG | 1 cut(s) | 680 |
| BtsI | GCAGTG | 1 cut(s) | 540 |
| BtsIMutI | CAGTG | 4 cut(s) | 50, 267, 438, 540 |
| Cac8I | GCNNGC | 2 cut(s) | 610, 821 |
| Cfr13I | GGNCC | 2 cut(s) | 151, 580 |
| ClaI | ATCGAT | 1 cut(s) | 146 |
| CseI | GACGC | 3 cut(s) | 123, 845, 917 |
| Csp6I | GTAC | 2 cut(s) | 230, 234 |
| CviAII | CATG | 7 cut(s) | 58, 69, 335, 409, 530, 685, 995 |
| CviQI | GTAC | 2 cut(s) | 230, 234 |
| DdeI | CTNAG | 2 cut(s) | 29, 101 |
| DpnI | GATC | 5 cut(s) | 145, 162, 200, 448, 830 |
| DpnII | GATC | 5 cut(s) | 143, 160, 198, 446, 828 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 394 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 394 |
| Eam1104I | CTCTTC | 1 cut(s) | 515 |
| EarI | CTCTTC | 1 cut(s) | 515 |
| Eco105I | TACGTA | 1 cut(s) | 233 |
| Eco130I | CCWWGG | 3 cut(s) | 138, 408, 888 |
| Eco31I | GGTCTC | 1 cut(s) | 32 |
| Eco47I | GGWCC | 2 cut(s) | 151, 580 |
| EcoRII | CCWGG | 3 cut(s) | 236, 463, 645 |
| EcoT14I | CCWWGG | 3 cut(s) | 138, 408, 888 |
| ErhI | CCWWGG | 3 cut(s) | 138, 408, 888 |
| FaeI | CATG | 7 cut(s) | 61, 72, 338, 412, 533, 688, 998 |
| FaqI | GGGAC | 3 cut(s) | 99, 437, 552 |
| FatI | CATG | 7 cut(s) | 57, 68, 334, 408, 529, 684, 994 |
| FauI | CCCGC | 2 cut(s) | 406, 482 |
| Fnu4HI | GCNGC | 3 cut(s) | 176, 441, 698 |
| FokI | GGATG | 1 cut(s) | 667 |
| Fsp4HI | GCNGC | 3 cut(s) | 176, 441, 698 |
| FspBI | CTAG | 6 cut(s) | 444, 701, 851, 987, 1052, 1085 |
| GluI | GCNGC | 3 cut(s) | 176, 441, 698 |
| GsaI | CCCAGC | 1 cut(s) | 519 |
| GsuI | CTGGAG | 1 cut(s) | 243 |
| HaeIII | GGCC | 1 cut(s) | 188 |
| HapII | CCGG | 1 cut(s) | 272 |
| HgaI | GACGC | 3 cut(s) | 123, 845, 917 |
| Hin1I | GRCGYC | 1 cut(s) | 856 |
| Hin1II | CATG | 7 cut(s) | 61, 72, 338, 412, 533, 688, 998 |
| HincII | GTYRAC | 1 cut(s) | 279 |
| HindII | GTYRAC | 1 cut(s) | 279 |
| HindIII | AAGCTT | 4 cut(s) | 356, 821, 939, 959 |
| HpaII | CCGG | 1 cut(s) | 272 |
| HphI | GGTGA | 6 cut(s) | 91, 277, 322, 355, 825, 1070 |
| Hpy166II | GTNNAC | 2 cut(s) | 279, 330 |
| Hpy188I | TCNGA | 4 cut(s) | 155, 165, 766, 979 |
| Hpy188III | TCNNGA | 2 cut(s) | 314, 497 |
| Hpy8I | GTNNAC | 2 cut(s) | 279, 330 |
| Hpy99I | CGWCG | 3 cut(s) | 225, 228, 933 |
| HpyAV | CCTTC | 8 cut(s) | 76, 106, 235, 289, 292, 475, 1018, 1049 |
| HpyCH4III | ACNGT | 1 cut(s) | 391 |
| HpyCH4IV | ACGT | 1 cut(s) | 232 |
| HpyCH4V | TGCA | 9 cut(s) | 175, 341, 385, 533, 619, 688, 805, 994, 1040 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 512, 694 |
| HpyF3I | CTNAG | 2 cut(s) | 29, 101 |
| HpySE526I | ACGT | 1 cut(s) | 232 |
| Hsp92I | GRCGYC | 1 cut(s) | 856 |
| Hsp92II | CATG | 7 cut(s) | 61, 72, 338, 412, 533, 688, 998 |
| Kzo9I | GATC | 5 cut(s) | 143, 160, 198, 446, 828 |
| LmnI | GCTCC | 2 cut(s) | 131, 694 |
| Lsp1109I | GCAGC | 2 cut(s) | 187, 709 |
| LweI | GCATC | 2 cut(s) | 328, 372 |
| MaeI | CTAG | 6 cut(s) | 444, 701, 851, 987, 1052, 1085 |
| MaeII | ACGT | 1 cut(s) | 232 |
| MaeIII | GTNAC | 3 cut(s) | 459, 1012, 1065 |
| MalI | GATC | 5 cut(s) | 145, 162, 200, 448, 830 |
| MboI | GATC | 5 cut(s) | 143, 160, 198, 446, 828 |
| MboII | GAAGA | 5 cut(s) | 532, 668, 757, 853, 856 |
| MfeI | CAATTG | 1 cut(s) | 771 |
| MflI | RGATCY | 1 cut(s) | 446 |
| MluCI | AATT | 3 cut(s) | 251, 507, 771 |
| MlyI | GAGTC | 3 cut(s) | 574, 1037, 1073 |
| MmeI | TCCRAC | 1 cut(s) | 744 |
| MseI | TTAA | 2 cut(s) | 300, 969 |
| MslI | CAYNNNNRTG | 2 cut(s) | 689, 813 |
| MspA1I | CMGCKG | 1 cut(s) | 178 |
| MspI | CCGG | 1 cut(s) | 272 |
| MspR9I | CCNGG | 3 cut(s) | 238, 465, 647 |
| MunI | CAATTG | 1 cut(s) | 771 |
| Mva1269I | GAATGC | 1 cut(s) | 172 |
| MvaI | CCWGG | 3 cut(s) | 238, 465, 647 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 512, 694 |
| NcoI | CCATGG | 1 cut(s) | 408 |
| NdeII | GATC | 5 cut(s) | 143, 160, 198, 446, 828 |
| NlaIII | CATG | 7 cut(s) | 61, 72, 338, 412, 533, 688, 998 |
| NlaIV | GGNNCC | 2 cut(s) | 48, 550 |
| NmuCI | GTSAC | 1 cut(s) | 1065 |
| NspI | RCATGY | 1 cut(s) | 998 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 229 |
| PctI | GAATGC | 1 cut(s) | 172 |
| PfeI | GAWTC | 7 cut(s) | 65, 493, 767, 799, 913, 953, 974 |
| PkrI | GCNGC | 3 cut(s) | 177, 442, 699 |
| PleI | GAGTC | 3 cut(s) | 573, 1036, 1072 |
| PpsI | GAGTC | 3 cut(s) | 573, 1036, 1072 |
| Ppu21I | YACGTR | 1 cut(s) | 233 |
| Psp6I | CCWGG | 3 cut(s) | 236, 463, 645 |
| PspFI | CCCAGC | 1 cut(s) | 515 |
| PspGI | CCWGG | 3 cut(s) | 236, 463, 645 |
| PspN4I | GGNNCC | 2 cut(s) | 48, 550 |
| PspPI | GGNCC | 2 cut(s) | 151, 580 |
| PstI | CTGCAG | 1 cut(s) | 1042 |
| PsuI | RGATCY | 1 cut(s) | 446 |
| RsaI | GTAC | 2 cut(s) | 231, 235 |
| RsaNI | GTAC | 2 cut(s) | 230, 234 |
| RseI | CAYNNNNRTG | 2 cut(s) | 689, 813 |
| SaqAI | TTAA | 2 cut(s) | 300, 969 |
| SatI | GCNGC | 3 cut(s) | 176, 441, 698 |
| Sau3AI | GATC | 5 cut(s) | 143, 160, 198, 446, 828 |
| Sau96I | GGNCC | 2 cut(s) | 151, 580 |
| SchI | GAGTC | 3 cut(s) | 574, 1037, 1073 |
| ScrFI | CCNGG | 3 cut(s) | 238, 465, 647 |
| SfaNI | GCATC | 2 cut(s) | 328, 372 |
| SfcI | CTRYAG | 1 cut(s) | 1038 |
| SinI | GGWCC | 2 cut(s) | 151, 580 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 689, 813 |
| SnaBI | TACGTA | 1 cut(s) | 233 |
| Sse9I | AATT | 3 cut(s) | 251, 507, 771 |
| SsiI | CCGC | 4 cut(s) | 178, 413, 440, 489 |
| SspI | AATATT | 1 cut(s) | 752 |
| SspMI | CTAG | 6 cut(s) | 444, 701, 851, 987, 1052, 1085 |
| StyD4I | CCNGG | 3 cut(s) | 236, 463, 645 |
| StyI | CCWWGG | 3 cut(s) | 138, 408, 888 |
| TaaI | ACNGT | 1 cut(s) | 391 |
| TaiI | ACGT | 1 cut(s) | 235 |
| TaqI | TCGA | 3 cut(s) | 146, 213, 315 |
| TasI | AATT | 3 cut(s) | 251, 507, 771 |
| TauI | GCSGC | 1 cut(s) | 443 |
| TfiI | GAWTC | 7 cut(s) | 65, 493, 767, 799, 913, 953, 974 |
| Tru1I | TTAA | 2 cut(s) | 300, 969 |
| Tru9I | TTAA | 2 cut(s) | 300, 969 |
| TscAI | CASTG | 4 cut(s) | 57, 267, 438, 540 |
| TseFI | GTSAC | 1 cut(s) | 1065 |
| TseI | GCWGC | 2 cut(s) | 175, 697 |
| Tsp45I | GTSAC | 1 cut(s) | 1065 |
| TspDTI | ATGAA | 4 cut(s) | 274, 669, 896, 987 |
| TspGWI | ACGGA | 1 cut(s) | 388 |
| TspRI | CASTG | 4 cut(s) | 57, 267, 438, 540 |
| VpaK11BI | GGWCC | 2 cut(s) | 151, 580 |
| XapI | RAATTY | 1 cut(s) | 251 |
| XceI | RCATGY | 1 cut(s) | 998 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 341 |
| XspI | CTAG | 6 cut(s) | 444, 701, 851, 987, 1052, 1085 |