Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 200 |
| Acc36I | ACCTGC | 1 cut(s) | 200 |
| AccB1I | GGYRCC | 1 cut(s) | 340 |
| AccI | GTMKAC | 1 cut(s) | 96 |
| AclWI | GGATC | 1 cut(s) | 445 |
| AcuI | CTGAAG | 1 cut(s) | 261 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 334 |
| AgsI | TTSAA | 3 cut(s) | 8, 154, 230 |
| AluBI | AGCT | 2 cut(s) | 137, 245 |
| AluI | AGCT | 2 cut(s) | 137, 245 |
| Alw26I | GTCTC | 2 cut(s) | 230, 326 |
| AlwI | GGATC | 1 cut(s) | 445 |
| AoxI | GGCC | 3 cut(s) | 10, 126, 190 |
| ApeKI | GCWGC | 2 cut(s) | 71, 83 |
| AspLEI | GCGC | 1 cut(s) | 412 |
| AspS9I | GGNCC | 3 cut(s) | 127, 190, 272 |
| AsuC2I | CCSGG | 2 cut(s) | 147, 329 |
| AsuHPI | GGTGA | 2 cut(s) | 224, 385 |
| AsuII | TTCGAA | 1 cut(s) | 23 |
| AvaII | GGWCC | 1 cut(s) | 272 |
| AxyI | CCTNAGG | 1 cut(s) | 433 |
| BanI | GGYRCC | 1 cut(s) | 340 |
| BbvI | GCAGC | 2 cut(s) | 58, 70 |
| BccI | CCATC | 4 cut(s) | 206, 311, 349, 436 |
| BclI | TGATCA | 1 cut(s) | 36 |
| BcnI | CCSGG | 2 cut(s) | 147, 329 |
| BcoDI | GTCTC | 2 cut(s) | 230, 326 |
| BfaI | CTAG | 1 cut(s) | 138 |
| BfmI | CTRYAG | 1 cut(s) | 72 |
| BfoI | RGCGCY | 1 cut(s) | 413 |
| BfuAI | ACCTGC | 1 cut(s) | 200 |
| BisI | GCNGC | 2 cut(s) | 72, 84 |
| BlsI | GCNGC | 2 cut(s) | 73, 85 |
| Bme1390I | CCNGG | 2 cut(s) | 147, 329 |
| Bme18I | GGWCC | 1 cut(s) | 272 |
| BmgT120I | GGNCC | 3 cut(s) | 127, 190, 272 |
| BmiI | GGNNCC | 4 cut(s) | 129, 160, 273, 342 |
| BmrFI | CCNGG | 2 cut(s) | 147, 329 |
| BmrI | ACTGGG | 1 cut(s) | 74 |
| BmuI | ACTGGG | 1 cut(s) | 74 |
| Bpu14I | TTCGAA | 1 cut(s) | 23 |
| BpuMI | CCSGG | 2 cut(s) | 147, 329 |
| Bsa29I | ATCGAT | 1 cut(s) | 440 |
| BsaI | GGTCTC | 1 cut(s) | 326 |
| BsaJI | CCNNGG | 3 cut(s) | 54, 146, 275 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 334 |
| Bse1I | ACTGG | 1 cut(s) | 69 |
| Bse21I | CCTNAGG | 1 cut(s) | 433 |
| BseCI | ATCGAT | 1 cut(s) | 440 |
| BseDI | CCNNGG | 3 cut(s) | 54, 146, 275 |
| BseGI | GGATG | 2 cut(s) | 50, 198 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 334 |
| BseMII | CTCAG | 3 cut(s) | 196, 337, 386 |
| BseNI | ACTGG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 1 cut(s) | 350 |
| BseXI | GCAGC | 2 cut(s) | 58, 70 |
| BshFI | GGCC | 3 cut(s) | 12, 128, 192 |
| BshNI | GGYRCC | 1 cut(s) | 340 |
| BshVI | ATCGAT | 1 cut(s) | 440 |
| BsiSI | CCGG | 2 cut(s) | 146, 329 |
| BslFI | GGGAC | 1 cut(s) | 393 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 334 |
| BsmAI | GTCTC | 2 cut(s) | 230, 326 |
| BsmFI | GGGAC | 1 cut(s) | 393 |
| BsnI | GGCC | 3 cut(s) | 12, 128, 192 |
| Bso31I | GGTCTC | 1 cut(s) | 326 |
| Bsp119I | TTCGAA | 1 cut(s) | 23 |
| Bsp143I | GATC | 3 cut(s) | 36, 185, 437 |
| BspANI | GGCC | 3 cut(s) | 12, 128, 192 |
| BspCNI | CTCAG | 3 cut(s) | 195, 336, 387 |
| BspDI | ATCGAT | 1 cut(s) | 440 |
| BspLI | GGNNCC | 4 cut(s) | 129, 160, 273, 342 |
| BspMAI | CTGCAG | 1 cut(s) | 76 |
| BspMI | ACCTGC | 1 cut(s) | 200 |
| BspPI | GGATC | 1 cut(s) | 445 |
| BspT104I | TTCGAA | 1 cut(s) | 23 |
| BspT107I | GGYRCC | 1 cut(s) | 340 |
| BspTNI | GGTCTC | 1 cut(s) | 326 |
| BsrI | ACTGG | 1 cut(s) | 69 |
| BssECI | CCNNGG | 3 cut(s) | 54, 146, 275 |
| BssMI | GATC | 3 cut(s) | 36, 185, 437 |
| BssT1I | CCWWGG | 2 cut(s) | 54, 275 |
| Bst4CI | ACNGT | 1 cut(s) | 384 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 80 |
| BstBI | TTCGAA | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 1 cut(s) | 414 |
| BstDEI | CTNAG | 4 cut(s) | 182, 323, 395, 433 |
| BstF5I | GGATG | 2 cut(s) | 50, 198 |
| BstH2I | RGCGCY | 1 cut(s) | 413 |
| BstHHI | GCGC | 1 cut(s) | 412 |
| BstKTI | GATC | 3 cut(s) | 39, 188, 440 |
| BstMAI | GTCTC | 2 cut(s) | 230, 326 |
| BstMBI | GATC | 3 cut(s) | 36, 185, 437 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 68, 80, 134 |
| BstSCI | CCNGG | 2 cut(s) | 145, 327 |
| BstSFI | CTRYAG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 2 cut(s) | 58, 70 |
| Bsu15I | ATCGAT | 1 cut(s) | 440 |
| Bsu36I | CCTNAGG | 1 cut(s) | 433 |
| BsuRI | GGCC | 3 cut(s) | 12, 128, 192 |
| BsuTUI | ATCGAT | 1 cut(s) | 440 |
| BtsCI | GGATG | 2 cut(s) | 50, 198 |
| BtsIMutI | CAGTG | 1 cut(s) | 62 |
| BveI | ACCTGC | 1 cut(s) | 200 |
| Cac8I | GCNNGC | 1 cut(s) | 414 |
| CfoI | GCGC | 1 cut(s) | 412 |
| Cfr13I | GGNCC | 3 cut(s) | 127, 190, 272 |
| ClaI | ATCGAT | 1 cut(s) | 440 |
| CseI | GACGC | 3 cut(s) | 126, 215, 417 |
| CviAII | CATG | 3 cut(s) | 266, 352, 363 |
| DdeI | CTNAG | 4 cut(s) | 182, 323, 395, 433 |
| DpnI | GATC | 3 cut(s) | 38, 187, 439 |
| DpnII | GATC | 3 cut(s) | 36, 185, 437 |
| Eco130I | CCWWGG | 2 cut(s) | 54, 275 |
| Eco147I | AGGCCT | 1 cut(s) | 12 |
| Eco31I | GGTCTC | 1 cut(s) | 326 |
| Eco47I | GGWCC | 1 cut(s) | 272 |
| Eco57I | CTGAAG | 1 cut(s) | 261 |
| Eco81I | CCTNAGG | 1 cut(s) | 433 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| EcoT14I | CCWWGG | 2 cut(s) | 54, 275 |
| ErhI | CCWWGG | 2 cut(s) | 54, 275 |
| FaeI | CATG | 3 cut(s) | 269, 355, 366 |
| FaiI | YATR | 9 cut(s) | 164, 175, 248, 267, 288, 296, 315, 353, 364 |
| FaqI | GGGAC | 1 cut(s) | 393 |
| FatI | CATG | 3 cut(s) | 265, 351, 362 |
| FbaI | TGATCA | 1 cut(s) | 36 |
| FblI | GTMKAC | 1 cut(s) | 96 |
| Fnu4HI | GCNGC | 2 cut(s) | 72, 84 |
| FokI | GGATG | 2 cut(s) | 37, 185 |
| Fsp4HI | GCNGC | 2 cut(s) | 72, 84 |
| FspBI | CTAG | 1 cut(s) | 138 |
| GlaI | GCGC | 1 cut(s) | 411 |
| GluI | GCNGC | 2 cut(s) | 72, 84 |
| HaeII | RGCGCY | 1 cut(s) | 413 |
| HaeIII | GGCC | 3 cut(s) | 12, 128, 192 |
| HapII | CCGG | 2 cut(s) | 146, 329 |
| HgaI | GACGC | 3 cut(s) | 126, 215, 417 |
| HhaI | GCGC | 1 cut(s) | 412 |
| Hin1II | CATG | 3 cut(s) | 269, 355, 366 |
| Hin6I | GCGC | 1 cut(s) | 410 |
| HinP1I | GCGC | 1 cut(s) | 410 |
| HincII | GTYRAC | 1 cut(s) | 97 |
| HindII | GTYRAC | 1 cut(s) | 97 |
| HinfI | GANTC | 3 cut(s) | 20, 47, 359 |
| HpaII | CCGG | 2 cut(s) | 146, 329 |
| HphI | GGTGA | 2 cut(s) | 224, 385 |
| Hpy166II | GTNNAC | 1 cut(s) | 97 |
| Hpy188I | TCNGA | 3 cut(s) | 46, 185, 449 |
| Hpy8I | GTNNAC | 1 cut(s) | 97 |
| Hpy99I | CGWCG | 1 cut(s) | 172 |
| HpyAV | CCTTC | 2 cut(s) | 370, 400 |
| HpyCH4III | ACNGT | 1 cut(s) | 384 |
| HpyCH4V | TGCA | 2 cut(s) | 62, 74 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 68, 80, 134 |
| HpyF3I | CTNAG | 4 cut(s) | 182, 323, 395, 433 |
| Hsp92II | CATG | 3 cut(s) | 269, 355, 366 |
| HspAI | GCGC | 1 cut(s) | 410 |
| Ksp22I | TGATCA | 1 cut(s) | 36 |
| Kzo9I | GATC | 3 cut(s) | 36, 185, 437 |
| LmnI | GCTCC | 1 cut(s) | 425 |
| LpnPI | CCDG | 7 cut(s) | 50, 60, 77, 95, 159, 195, 342 |
| Lsp1109I | GCAGC | 2 cut(s) | 58, 70 |
| MaeI | CTAG | 1 cut(s) | 138 |
| MalI | GATC | 3 cut(s) | 38, 187, 439 |
| MboI | GATC | 3 cut(s) | 36, 185, 437 |
| MluCI | AATT | 2 cut(s) | 40, 230 |
| MlyI | GAGTC | 1 cut(s) | 41 |
| MmeI | TCCRAC | 1 cut(s) | 94 |
| MnlI | CCTC | 3 cut(s) | 171, 328, 331 |
| MspI | CCGG | 2 cut(s) | 146, 329 |
| MspR9I | CCNGG | 2 cut(s) | 147, 329 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 68, 80, 134 |
| NciI | CCSGG | 2 cut(s) | 147, 329 |
| NdeII | GATC | 3 cut(s) | 36, 185, 437 |
| NlaIII | CATG | 3 cut(s) | 269, 355, 366 |
| NlaIV | GGNNCC | 4 cut(s) | 129, 160, 273, 342 |
| NspV | TTCGAA | 1 cut(s) | 23 |
| PaqCI | CACCTGC | 1 cut(s) | 200 |
| PceI | AGGCCT | 1 cut(s) | 12 |
| PfeI | GAWTC | 2 cut(s) | 20, 359 |
| PkrI | GCNGC | 2 cut(s) | 73, 85 |
| PleI | GAGTC | 1 cut(s) | 41 |
| PpsI | GAGTC | 1 cut(s) | 41 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| PspN4I | GGNNCC | 4 cut(s) | 129, 160, 273, 342 |
| PspPI | GGNCC | 3 cut(s) | 127, 190, 272 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| PstI | CTGCAG | 1 cut(s) | 76 |
| SalI | GTCGAC | 1 cut(s) | 95 |
| SatI | GCNGC | 2 cut(s) | 72, 84 |
| Sau3AI | GATC | 3 cut(s) | 36, 185, 437 |
| Sau96I | GGNCC | 3 cut(s) | 127, 190, 272 |
| SchI | GAGTC | 1 cut(s) | 41 |
| ScrFI | CCNGG | 2 cut(s) | 147, 329 |
| SetI | ASST | 5 cut(s) | 96, 139, 214, 247, 342 |
| SfcI | CTRYAG | 1 cut(s) | 72 |
| SfuI | TTCGAA | 1 cut(s) | 23 |
| SinI | GGWCC | 1 cut(s) | 272 |
| Sse9I | AATT | 2 cut(s) | 40, 230 |
| SseBI | AGGCCT | 1 cut(s) | 12 |
| SspMI | CTAG | 1 cut(s) | 138 |
| StuI | AGGCCT | 1 cut(s) | 12 |
| StyD4I | CCNGG | 2 cut(s) | 145, 327 |
| StyI | CCWWGG | 2 cut(s) | 54, 275 |
| TaaI | ACNGT | 1 cut(s) | 384 |
| TaqI | TCGA | 4 cut(s) | 23, 96, 167, 440 |
| TasI | AATT | 2 cut(s) | 40, 230 |
| TfiI | GAWTC | 2 cut(s) | 20, 359 |
| TscAI | CASTG | 1 cut(s) | 69 |
| TseI | GCWGC | 2 cut(s) | 71, 83 |
| TspRI | CASTG | 1 cut(s) | 69 |
| VpaK11BI | GGWCC | 1 cut(s) | 272 |
| XmiI | GTMKAC | 1 cut(s) | 96 |
| XspI | CTAG | 1 cut(s) | 138 |