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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 400 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 376 |
| AccII | CGCG | 1 cut(s) | 354 |
| AciI | CCGC | 1 cut(s) | 77 |
| AclWI | GGATC | 2 cut(s) | 315, 328 |
| AfaI | GTAC | 1 cut(s) | 391 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 376 |
| AgsI | TTSAA | 1 cut(s) | 294 |
| AjnI | CCWGG | 1 cut(s) | 12 |
| AluBI | AGCT | 3 cut(s) | 191, 229, 239 |
| AluI | AGCT | 3 cut(s) | 191, 229, 239 |
| Alw26I | GTCTC | 2 cut(s) | 80, 313 |
| AlwI | GGATC | 2 cut(s) | 315, 328 |
| AspLEI | GCGC | 2 cut(s) | 330, 354 |
| AsuC2I | CCSGG | 2 cut(s) | 261, 398 |
| AsuHPI | GGTGA | 3 cut(s) | 52, 223, 325 |
| BamHI | GGATCC | 1 cut(s) | 320 |
| BanI | GGYRCC | 1 cut(s) | 400 |
| BbsI | GAAGAC | 1 cut(s) | 428 |
| BccI | CCATC | 3 cut(s) | 409, 421, 464 |
| BceAI | ACGGC | 1 cut(s) | 198 |
| BciT130I | CCWGG | 1 cut(s) | 14 |
| BcnI | CCSGG | 2 cut(s) | 261, 398 |
| BcoDI | GTCTC | 2 cut(s) | 80, 313 |
| BfaI | CTAG | 2 cut(s) | 236, 507 |
| BfmI | CTRYAG | 1 cut(s) | 201 |
| BisI | GCNGC | 1 cut(s) | 78 |
| BlsI | GCNGC | 1 cut(s) | 79 |
| Bme1390I | CCNGG | 3 cut(s) | 14, 261, 398 |
| BmiI | GGNNCC | 4 cut(s) | 11, 246, 322, 402 |
| BmrFI | CCNGG | 3 cut(s) | 14, 261, 398 |
| BmsI | GCATC | 3 cut(s) | 7, 475, 506 |
| BpiI | GAAGAC | 1 cut(s) | 428 |
| BpmI | CTGGAG | 3 cut(s) | 87, 191, 291 |
| Bpu10I | CCTNAGC | 1 cut(s) | 93 |
| BpuEI | CTTGAG | 2 cut(s) | 171, 390 |
| BpuMI | CCSGG | 2 cut(s) | 261, 398 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 264, 294 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 376 |
| Bse118I | RCCGGY | 1 cut(s) | 73 |
| Bse3DI | GCAATG | 2 cut(s) | 87, 517 |
| BseBI | CCWGG | 1 cut(s) | 14 |
| BseGI | GGATG | 5 cut(s) | 22, 227, 475, 490, 497 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 376 |
| BseMI | GCAATG | 2 cut(s) | 87, 517 |
| BseMII | CTCAG | 1 cut(s) | 107 |
| BseRI | GAGGAG | 1 cut(s) | 470 |
| Bsh1236I | CGCG | 1 cut(s) | 354 |
| BshNI | GGYRCC | 1 cut(s) | 400 |
| BsiSI | CCGG | 4 cut(s) | 74, 248, 260, 397 |
| BslFI | GGGAC | 1 cut(s) | 289 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 376 |
| BsmAI | GTCTC | 2 cut(s) | 80, 313 |
| BsmFI | GGGAC | 1 cut(s) | 289 |
| Bsp143I | GATC | 1 cut(s) | 320 |
| BspACI | CCGC | 1 cut(s) | 77 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspFNI | CGCG | 1 cut(s) | 354 |
| BspLI | GGNNCC | 4 cut(s) | 11, 246, 322, 402 |
| BspPI | GGATC | 2 cut(s) | 315, 328 |
| BspT107I | GGYRCC | 1 cut(s) | 400 |
| BsrDI | GCAATG | 2 cut(s) | 87, 517 |
| BsrFI | RCCGGY | 1 cut(s) | 73 |
| BssAI | RCCGGY | 1 cut(s) | 73 |
| BssMI | GATC | 1 cut(s) | 320 |
| Bst2UI | CCWGG | 1 cut(s) | 14 |
| Bst4CI | ACNGT | 1 cut(s) | 280 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 494 |
| BstDEI | CTNAG | 1 cut(s) | 93 |
| BstF5I | GGATG | 5 cut(s) | 22, 227, 475, 490, 497 |
| BstFNI | CGCG | 1 cut(s) | 354 |
| BstHHI | GCGC | 2 cut(s) | 330, 354 |
| BstKTI | GATC | 1 cut(s) | 323 |
| BstMAI | GTCTC | 2 cut(s) | 80, 313 |
| BstMBI | GATC | 1 cut(s) | 320 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 494 |
| BstNI | CCWGG | 1 cut(s) | 14 |
| BstNSI | RCATGY | 1 cut(s) | 464 |
| BstSCI | CCNGG | 3 cut(s) | 12, 259, 396 |
| BstSFI | CTRYAG | 1 cut(s) | 201 |
| BstUI | CGCG | 1 cut(s) | 354 |
| BstV2I | GAAGAC | 1 cut(s) | 428 |
| BstX2I | RGATCY | 1 cut(s) | 320 |
| BstYI | RGATCY | 1 cut(s) | 320 |
| BtsCI | GGATG | 5 cut(s) | 22, 227, 475, 490, 497 |
| CfoI | GCGC | 2 cut(s) | 330, 354 |
| Cfr10I | RCCGGY | 1 cut(s) | 73 |
| Csp6I | GTAC | 1 cut(s) | 390 |
| CviAII | CATG | 2 cut(s) | 461, 466 |
| CviJI | RGCY | 9 cut(s) | 65, 151, 185, 191, 229, 239, 267, 335, 445 |
| CviKI_1 | RGCY | 9 cut(s) | 65, 151, 185, 191, 229, 239, 267, 335, 445 |
| CviQI | GTAC | 1 cut(s) | 390 |
| DdeI | CTNAG | 1 cut(s) | 93 |
| DpnI | GATC | 1 cut(s) | 322 |
| DpnII | GATC | 1 cut(s) | 320 |
| EcoRII | CCWGG | 1 cut(s) | 12 |
| FaeI | CATG | 2 cut(s) | 464, 469 |
| FaiI | YATR | 5 cut(s) | 203, 299, 338, 462, 467 |
| FaqI | GGGAC | 1 cut(s) | 289 |
| FatI | CATG | 2 cut(s) | 460, 465 |
| Fnu4HI | GCNGC | 1 cut(s) | 78 |
| FokI | GGATG | 5 cut(s) | 29, 234, 482, 484, 497 |
| Fsp4HI | GCNGC | 1 cut(s) | 78 |
| FspBI | CTAG | 2 cut(s) | 236, 507 |
| GlaI | GCGC | 2 cut(s) | 329, 353 |
| GluI | GCNGC | 1 cut(s) | 78 |
| GsuI | CTGGAG | 3 cut(s) | 87, 191, 291 |
| HapII | CCGG | 4 cut(s) | 74, 248, 260, 397 |
| HhaI | GCGC | 2 cut(s) | 330, 354 |
| Hin1II | CATG | 2 cut(s) | 464, 469 |
| Hin6I | GCGC | 2 cut(s) | 328, 352 |
| HinP1I | GCGC | 2 cut(s) | 328, 352 |
| HinfI | GANTC | 2 cut(s) | 154, 290 |
| HpaII | CCGG | 4 cut(s) | 74, 248, 260, 397 |
| HphI | GGTGA | 3 cut(s) | 52, 223, 325 |
| Hpy166II | GTNNAC | 1 cut(s) | 390 |
| Hpy188III | TCNNGA | 2 cut(s) | 170, 270 |
| Hpy8I | GTNNAC | 1 cut(s) | 390 |
| HpyCH4III | ACNGT | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 4 cut(s) | 20, 134, 488, 497 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 494 |
| HpyF3I | CTNAG | 1 cut(s) | 93 |
| Hsp92II | CATG | 2 cut(s) | 464, 469 |
| HspAI | GCGC | 2 cut(s) | 328, 352 |
| Kzo9I | GATC | 1 cut(s) | 320 |
| LmnI | GCTCC | 2 cut(s) | 349, 457 |
| LweI | GCATC | 3 cut(s) | 7, 475, 506 |
| MaeI | CTAG | 2 cut(s) | 236, 507 |
| MaeIII | GTNAC | 1 cut(s) | 250 |
| MalI | GATC | 1 cut(s) | 322 |
| MboI | GATC | 1 cut(s) | 320 |
| MboII | GAAGA | 1 cut(s) | 433 |
| MflI | RGATCY | 1 cut(s) | 320 |
| MluCI | AATT | 1 cut(s) | 489 |
| MmeI | TCCRAC | 3 cut(s) | 158, 267, 327 |
| MnlI | CCTC | 9 cut(s) | 16, 55, 243, 266, 294, 355, 414, 448, 511 |
| MseI | TTAA | 1 cut(s) | 517 |
| MspI | CCGG | 4 cut(s) | 74, 248, 260, 397 |
| MspR9I | CCNGG | 3 cut(s) | 14, 261, 398 |
| MvaI | CCWGG | 1 cut(s) | 14 |
| MvnI | CGCG | 1 cut(s) | 354 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 494 |
| NciI | CCSGG | 2 cut(s) | 261, 398 |
| NdeII | GATC | 1 cut(s) | 320 |
| NlaIII | CATG | 2 cut(s) | 464, 469 |
| NlaIV | GGNNCC | 4 cut(s) | 11, 246, 322, 402 |
| NspI | RCATGY | 1 cut(s) | 464 |
| PfeI | GAWTC | 2 cut(s) | 154, 290 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 376 |
| PkrI | GCNGC | 1 cut(s) | 79 |
| Psp6I | CCWGG | 1 cut(s) | 12 |
| PspGI | CCWGG | 1 cut(s) | 12 |
| PspN4I | GGNNCC | 4 cut(s) | 11, 246, 322, 402 |
| PsuI | RGATCY | 1 cut(s) | 320 |
| RsaI | GTAC | 1 cut(s) | 391 |
| RsaNI | GTAC | 1 cut(s) | 390 |
| SaqAI | TTAA | 1 cut(s) | 517 |
| SatI | GCNGC | 1 cut(s) | 78 |
| Sau3AI | GATC | 1 cut(s) | 320 |
| ScrFI | CCNGG | 3 cut(s) | 14, 261, 398 |
| SetI | ASST | 7 cut(s) | 99, 130, 139, 193, 231, 235, 241 |
| SfaNI | GCATC | 3 cut(s) | 7, 475, 506 |
| SfcI | CTRYAG | 1 cut(s) | 201 |
| SmlI | CTYRAG | 2 cut(s) | 186, 405 |
| SmoI | CTYRAG | 2 cut(s) | 186, 405 |
| Sse9I | AATT | 1 cut(s) | 489 |
| SsiI | CCGC | 1 cut(s) | 77 |
| SspI | AATATT | 2 cut(s) | 439, 450 |
| SspMI | CTAG | 2 cut(s) | 236, 507 |
| StyD4I | CCNGG | 3 cut(s) | 12, 259, 396 |
| TaaI | ACNGT | 1 cut(s) | 280 |
| TaqI | TCGA | 3 cut(s) | 114, 196, 413 |
| TasI | AATT | 1 cut(s) | 489 |
| TatI | WGTACW | 1 cut(s) | 389 |
| TauI | GCSGC | 1 cut(s) | 80 |
| TfiI | GAWTC | 2 cut(s) | 154, 290 |
| Tru1I | TTAA | 1 cut(s) | 517 |
| Tru9I | TTAA | 1 cut(s) | 517 |
| TspDTI | ATGAA | 1 cut(s) | 89 |
| TspGWI | ACGGA | 1 cut(s) | 375 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 376 |
| XceI | RCATGY | 1 cut(s) | 464 |
| XspI | CTAG | 2 cut(s) | 236, 507 |