Rorug02G0239900

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
24563824 .. 24567261
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0239900.1

Sequence Viewer

Length: 2472 bp
ATGATTATTGTGTTGCAACATATTTTAACTTCGCGAAGTTATGAATTACTTAGAGCTCTTGAAGAGCCTGGTGTTGATATAACTGTTGCAGGTCATATACCATATGAGATTGGTTATCTTCCAAATTTAGAGAAATTGTCGCTCATTCAAAATAATCTAATTGGCGATATCCCATCCTCAATCTTCAATATCTCCACAATAACAACATTAGGTCTCAACTTCAATCAGCTTTCAGGTAGCCTCCCAACAGACATAGGGCTTGCGCTTCCAAAACTAGAAGTGTTCTATGCAGGAGTGAATCACCTCAGTGGAGTAATCCCCAAATCCATCTCCAATGCTTCTAAGCTTCGGAATCTAGACCTGGGACGTAACTCTTTTTCTGGATTTATTCCAACCACTCTGTGCCTCTTGACAAACCTTGAAGTGCTCGGATTGGTCGAGAATAATTTGACCATTGATACCTCTACTCCAGAAGTTAATATTTTTTCTTGTCTGCCAAATCTTAGAAATTTGAGGAGATTAGGCTTCCAAGACAATCCATTAAATACCAAGCTTCTGATTTCCTTCAGTAATTTCTCTGCATCACTTCAAAAGCTTTATTTAGGAAATTGCAGATTTAGAGGTAACATCCCCAATGACATTGGGAATTTGAGTAGCTTGATACTTTTAACCCTGGGAGGCAATCAATTGAGCGGGCCAATTCCAAGCTCAATGGGAAGACTACATAATCTTCAAGGTTTGGATATGAGTGATAACACATTGCAAGGATACATTCCAGATGAACTTTGTCAACTAGAAAACTTATTTTATTTGTCCTTGTGTGGGAATCAACTCTCTGGTTCTGTACCTTCCTGCTTGGGTAATCTAACAGCATCTCTTAGATATCTATGCTTATATTCCAATTTGTTGAATTCCACAATACCATCTACCTTGTGGGGACTTACAGATATCTTGCAACTAGACTTGTCATCCAATTCTCTAATTGGACCTCTATCAGGTGCTGTTGGTAATTTGAAAGCTGCTGTATACATAAATGTATCATACAACCAATTATCTGGTAGTGTACCAAGTAGCATTGGGAGTTTAGTGAGTTTGGTCAATCTCTCCTTAGCACATAACAATCTAGAAGGCCCTATTCCTAGTTCCTTTGCAGATTGTGTAAGCTTAGAAGGATTGGATTTATCTCGAAATAGTTTCACTGGAGTGATTCCAAAGTCTCTAGAAGCACTCTCACATCTCAAGTACCTGAATTTGTCTTTCAACAGACTCCAAGGAGAAATTCCAAGCAGCGGTCCTTTCAAAAACTTCTCTGCTGAATCATTTGTTTCAAACCATGGACTCTGTGGTGGATCCCAATTTCAAGTTCCACCATGCAAAAGAAAAACTAGCATATCTATCTTCAAGTATGTTATTCCGGGGATCTTGTCAGCAATGCTTCTAGCGGCCTCCATATTTTGGATGTTGATGTTACGCAGAAAAAAGAATGCAACAGCTGCAGCACATACTATCTTGACACCTCAAGTTTTCTGGAGAAGAGTTTCATACCTAGAGCTCCTACATGCAACAGATGGATTCAATGAAAGCAACTTACTTGGTACTGGGGGTTTTGGCTCAGTATATAAAGGAACATTGTCAGATGGGATAGACGTTGCGATAAAGGTTTTCAATTTGGACTTAGAAAGGGCATTTACAAGTTTTGAGGTTGAATGTGAAGTGCTAAGTAATGTTCGTCATAGAAATCTTGTCAAAGTCATCAGTTGCTGCAGTCAAATTGATTTCAAAGGTCTTGTATTGAATTACATGCCTAATGGGAGCCTTGAGAAGTGGTTGTATTCTCAGAATTCTTCTTTGCACATAATGCAGAGGTTGGATATAATGATAGATGTTGCATCGGCATTAGAGTACCATCATCATGGTTATGAAGTACCTATTGTCCATTGTGATTTGAAGCCAAGCAACATCCTACTAGATGATGATATGGTTGCACATGTTGCTGATTTTGGTATTGCGAGACTCTTGGGTGGAGGAGATTCTATGACTCAAACCATGACTCTAGCCACAATTGGGTATATTGCTCCAGAGTATGGAATGGAAGGAATAGTGACCAGAAGAGGGGATGTGTATAGTTTTGGTATTGTAGTGATGGAAACATTCACAAGAAGGAAGCCAACCGATGAGATCTTCATTGGGGACATGAGATTTAATCAATGGGTTGCAAGTTTTCTAGATGCGGATGCTATAGCTGAAGTTGTGGATGCTACTTTACTTGGAACCGAGGAGGATCATGAATTTGTGAGCAAGAGGGAGTGCTTATCATCCATTATGAGATTAGCTGTTGCTTGTTCAGCAGAATCACCGGAAGAGAGGATAAACATGCAAGAGGCTGTAGCCATGCTTAAAACAATCAAGATCAAGTTTTCAAAGCACGCTGCTGCAGGAGGTGAGGTGTTGAACTGTCGTCCTGTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

823

Amino Acids

89.94

Weight (kDa)

5.74

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 11 - 205 6e-08 Leucine-rich repeat region
LRR_14 PF23598 183 - 322 4e-09 Leucine-rich repeat region
LRR_8 PF13855 221 - 278 1.7e-06 Leucine rich repeat
LRR_8 PF13855 367 - 423 1.3e-09 Leucine rich repeat
Pkinase PF00069 526 - 797 6.9e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 529 - 798 4.6e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
AccB7I CCANNNNNTGG 2 cut(s) 1455, 2084
AccBSI CCGCTC 1 cut(s) 693
AccI GTMKAC 1 cut(s) 1026
AccII CGCG 1 cut(s) 34
AciI CCGC 4 cut(s) 693, 1290, 1442, 2231
AclWI GGATC 4 cut(s) 1344, 1357, 1427, 2289
AcsI RAATTY 8 cut(s) 124, 508, 646, 910, 1249, 1278, 1840, 2288
AcuI CTGAAG 2 cut(s) 550, 2265
AdeI CACNNNGTG 1 cut(s) 402
AfaI GTAC 6 cut(s) 846, 1065, 1244, 1597, 1904, 1926
AfiI CCNNNNNNNGG 7 cut(s) 822, 995, 1289, 1455, 2064, 2084, 2112
AflIII ACRYGT 1 cut(s) 1987
AjnI CCWGG 3 cut(s) 67, 360, 672
AjuI GAANNNNNNNTTGG 4 cut(s) 1263, 1295, 1347, 1379
AleI CACNNNNGTG 2 cut(s) 306, 1202
Alw21I GWGCWC 3 cut(s) 58, 429, 1554
Alw26I GTCTC 3 cut(s) 218, 1221, 2005
AlwI GGATC 4 cut(s) 1344, 1357, 1427, 2289
AlwNI CAGNNNCTG 2 cut(s) 1001, 1761
AoxI GGCC 3 cut(s) 695, 1129, 1443
ApeKI GCWGC 7 cut(s) 1019, 1287, 1493, 1496, 1761, 2429, 2432
ApoI RAATTY 8 cut(s) 124, 508, 646, 910, 1249, 1278, 1840, 2288
Asp700I GAANNNNTTC 1 cut(s) 1537
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 4 cut(s) 695, 986, 1130, 1292
AsuC2I CCSGG 1 cut(s) 1416
AsuHPI GGTGA 3 cut(s) 293, 2346, 2453
AvaII GGWCC 2 cut(s) 986, 1292
BamHI GGATCC 1 cut(s) 1349
BanII GRGCYC 2 cut(s) 58, 1554
BbsI GAAGAC 1 cut(s) 724
Bbv12I GWGCWC 3 cut(s) 58, 429, 1554
BbvI GCAGC 7 cut(s) 1006, 1299, 1480, 1508, 1748, 2416, 2419
BccI CCATC 7 cut(s) 181, 335, 931, 1562, 1631, 1914, 2137
BciT130I CCWGG 3 cut(s) 69, 362, 674
BciVI GTATCC 1 cut(s) 761
BcnI CCSGG 1 cut(s) 1416
BcoDI GTCTC 3 cut(s) 218, 1221, 2005
BfmI CTRYAG 5 cut(s) 1494, 1762, 2238, 2385, 2433
BfuAI ACCTGC 1 cut(s) 80
BfuI GTATCC 1 cut(s) 761
BglII AGATCT 1 cut(s) 2178
BisI GCNGC 8 cut(s) 1020, 1288, 1443, 1494, 1497, 1762, 2430, 2433
BlsI GCNGC 8 cut(s) 1021, 1289, 1444, 1495, 1498, 1763, 2431, 2434
Bme1390I CCNGG 4 cut(s) 69, 362, 674, 1416
Bme18I GGWCC 2 cut(s) 986, 1292
BmgT120I GGNCC 4 cut(s) 695, 986, 1130, 1292
BmiI GGNNCC 3 cut(s) 1351, 1814, 2272
BmrFI CCNGG 4 cut(s) 69, 362, 674, 1416
BmrI ACTGGG 1 cut(s) 1608
BmsI GCATC 6 cut(s) 590, 881, 1898, 2218, 2224, 2245
BmuI ACTGGG 1 cut(s) 1608
BpiI GAAGAC 1 cut(s) 724
BpmI CTGGAG 4 cut(s) 453, 1221, 1549, 2061
Bpu10I CCTNAGC 1 cut(s) 1108
BpuEI CTTGAG 3 cut(s) 1223, 1503, 1838
BpuMI CCSGG 1 cut(s) 1416
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 7 cut(s) 361, 672, 673, 1270, 1333, 1415, 2274
BsaWI WCCGGW 1 cut(s) 2356
BsaXI ACNNNNNCTCC 4 cut(s) 451, 481, 2430, 2460
Bsc4I CCNNNNNNNGG 7 cut(s) 822, 995, 1289, 1455, 2064, 2084, 2112
Bse1I ACTGG 2 cut(s) 1204, 1603
Bse3DI GCAATG 2 cut(s) 758, 1437
BseBI CCWGG 3 cut(s) 69, 362, 674
BseDI CCNNGG 7 cut(s) 361, 672, 673, 1270, 1333, 1415, 2274
BseGI GGATG 9 cut(s) 173, 627, 968, 1464, 1959, 2122, 2239, 2260, 2315
BseLI CCNNNNNNNGG 7 cut(s) 822, 995, 1289, 1455, 2064, 2084, 2112
BseMI GCAATG 2 cut(s) 758, 1437
BseMII CTCAG 3 cut(s) 319, 1626, 1850
BseNI ACTGG 2 cut(s) 1204, 1603
BseRI GAGGAG 3 cut(s) 529, 2040, 2291
BseXI GCAGC 7 cut(s) 1006, 1299, 1480, 1508, 1748, 2416, 2419
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 3 cut(s) 697, 1131, 1445
BsiHKAI GWGCWC 3 cut(s) 58, 429, 1554
BsiSI CCGG 2 cut(s) 1415, 2357
BslFI GGGAC 3 cut(s) 378, 951, 2204
BslI CCNNNNNNNGG 7 cut(s) 822, 995, 1289, 1455, 2064, 2084, 2112
BsmAI GTCTC 3 cut(s) 218, 1221, 2005
BsmFI GGGAC 3 cut(s) 378, 951, 2204
BsmI GAATGC 1 cut(s) 1489
BsnI GGCC 3 cut(s) 697, 1131, 1445
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 3 cut(s) 58, 429, 1554
Bsp143I GATC 5 cut(s) 1349, 1419, 2178, 2281, 2409
Bsp19I CCATGG 1 cut(s) 1333
Bsp68I TCGCGA 1 cut(s) 34
BspACI CCGC 4 cut(s) 693, 1290, 1442, 2231
BspANI GGCC 3 cut(s) 697, 1131, 1445
BspCNI CTCAG 3 cut(s) 318, 1625, 1849
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 2284
BspLI GGNNCC 3 cut(s) 1351, 1814, 2272
BspMAI CTGCAG 3 cut(s) 1498, 1766, 2437
BspMI ACCTGC 1 cut(s) 80
BspPI GGATC 4 cut(s) 1344, 1357, 1427, 2289
BspQI GCTCTTC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 693
BsrDI GCAATG 2 cut(s) 758, 1437
BsrI ACTGG 2 cut(s) 1204, 1603
BssECI CCNNGG 7 cut(s) 361, 672, 673, 1270, 1333, 1415, 2274
BssMI GATC 5 cut(s) 1349, 1419, 2178, 2281, 2409
BssNAI GTATAC 1 cut(s) 1027
BssT1I CCWWGG 2 cut(s) 1270, 1333
Bst1107I GTATAC 1 cut(s) 1027
Bst2UI CCWGG 3 cut(s) 69, 362, 674
Bst4CI ACNGT 2 cut(s) 85, 2456
Bst6I CTCTTC 4 cut(s) 57, 1528, 2104, 2355
BstAPI GCANNNNNTGC 3 cut(s) 1493, 1858, 1991
BstC8I GCNNGC 3 cut(s) 261, 695, 2427
BstDSI CCRYGG 1 cut(s) 1333
BstENI CCTNNNNNAGG 1 cut(s) 993
BstF5I GGATG 9 cut(s) 173, 627, 968, 1464, 1959, 2122, 2239, 2260, 2315
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 5 cut(s) 1352, 1422, 2181, 2284, 2412
BstMAI GTCTC 3 cut(s) 218, 1221, 2005
BstMBI GATC 5 cut(s) 1349, 1419, 2178, 2281, 2409
BstMWI GCNNNNNNNGC 4 cut(s) 1493, 1858, 1991, 2345
BstNI CCWGG 3 cut(s) 69, 362, 674
BstNSI RCATGY 4 cut(s) 1562, 1804, 1991, 2377
BstSCI CCNGG 4 cut(s) 67, 360, 672, 1414
BstSFI CTRYAG 5 cut(s) 1494, 1762, 2238, 2385, 2433
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 7 cut(s) 1006, 1299, 1480, 1508, 1748, 2416, 2419
BstV2I GAAGAC 1 cut(s) 724
BstX2I RGATCY 3 cut(s) 1349, 1419, 2178
BstXI CCANNNNNNTGG 2 cut(s) 1055, 1913
BstYI RGATCY 3 cut(s) 1349, 1419, 2178
BstZ17I GTATAC 1 cut(s) 1027
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 3 cut(s) 697, 1131, 1445
BtgI CCRYGG 1 cut(s) 1333
BtsCI GGATG 9 cut(s) 173, 627, 968, 1464, 1959, 2122, 2239, 2260, 2315
BtsIMutI CAGTG 2 cut(s) 313, 1197
BtuMI TCGCGA 1 cut(s) 34
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 3 cut(s) 261, 695, 2427
CaiI CAGNNNCTG 2 cut(s) 1001, 1761
CciI TCATGA 1 cut(s) 2284
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 4 cut(s) 695, 986, 1130, 1292
Csp6I GTAC 6 cut(s) 845, 1064, 1243, 1596, 1903, 1925
CviQI GTAC 6 cut(s) 845, 1064, 1243, 1596, 1903, 1925
DpnI GATC 5 cut(s) 1351, 1421, 2180, 2283, 2411
DpnII GATC 5 cut(s) 1349, 1419, 2178, 2281, 2409
DraIII CACNNNGTG 1 cut(s) 402
Eam1104I CTCTTC 4 cut(s) 57, 1528, 2104, 2355
EarI CTCTTC 4 cut(s) 57, 1528, 2104, 2355
Ecl136II GAGCTC 2 cut(s) 56, 1552
Eco130I CCWWGG 2 cut(s) 1270, 1333
Eco24I GRGCYC 2 cut(s) 58, 1554
Eco31I GGTCTC 1 cut(s) 218
Eco32I GATATC 3 cut(s) 169, 884, 949
Eco47I GGWCC 2 cut(s) 986, 1292
Eco53kI GAGCTC 2 cut(s) 56, 1552
Eco57I CTGAAG 2 cut(s) 550, 2265
EcoICRI GAGCTC 2 cut(s) 56, 1552
EcoNI CCTNNNNNAGG 1 cut(s) 993
EcoO109I RGGNCCY 1 cut(s) 1130
EcoRI GAATTC 2 cut(s) 910, 1840
EcoRII CCWGG 3 cut(s) 67, 360, 672
EcoRV GATATC 3 cut(s) 169, 884, 949
EcoT14I CCWWGG 2 cut(s) 1270, 1333
EcoT38I GRGCYC 2 cut(s) 58, 1554
ErhI CCWWGG 2 cut(s) 1270, 1333
FaqI GGGAC 3 cut(s) 378, 951, 2204
FauI CCCGC 1 cut(s) 686
FauNDI CATATG 1 cut(s) 103
FblI GTMKAC 1 cut(s) 1026
Fnu4HI GCNGC 8 cut(s) 1020, 1288, 1443, 1494, 1497, 1762, 2430, 2433
FokI GGATG 9 cut(s) 160, 614, 955, 1471, 1946, 2129, 2246, 2267, 2302
FriOI GRGCYC 2 cut(s) 58, 1554
Fsp4HI GCNGC 8 cut(s) 1020, 1288, 1443, 1494, 1497, 1762, 2430, 2433
GlaI GCGC 1 cut(s) 264
GluI GCNGC 8 cut(s) 1020, 1288, 1443, 1494, 1497, 1762, 2430, 2433
GsuI CTGGAG 4 cut(s) 453, 1221, 1549, 2061
HaeIII GGCC 3 cut(s) 697, 1131, 1445
HapII CCGG 2 cut(s) 1415, 2357
HhaI GCGC 1 cut(s) 265
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 791
HindII GTYRAC 1 cut(s) 791
HindIII AAGCTT 4 cut(s) 344, 551, 593, 1162
HpaII CCGG 2 cut(s) 1415, 2357
HphI GGTGA 3 cut(s) 293, 2346, 2453
Hpy166II GTNNAC 3 cut(s) 791, 1027, 1064
Hpy188I TCNGA 5 cut(s) 351, 431, 558, 1636, 1839
Hpy8I GTNNAC 3 cut(s) 791, 1027, 1064
HpyAV CCTTC 6 cut(s) 574, 858, 1121, 1163, 2087, 2154
HpyCH4III ACNGT 2 cut(s) 85, 2456
HpyCH4IV ACGT 2 cut(s) 367, 1647
HpyF10VI GCNNNNNNNGC 4 cut(s) 1493, 1858, 1991, 2345
HpySE526I ACGT 2 cut(s) 367, 1647
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 5 cut(s) 1349, 1419, 2178, 2281, 2409
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 1557, 1812, 2080
Lsp1109I GCAGC 7 cut(s) 1006, 1299, 1480, 1508, 1748, 2416, 2419
LweI GCATC 6 cut(s) 590, 881, 1898, 2218, 2224, 2245
MaeII ACGT 2 cut(s) 367, 1647
MaeIII GTNAC 4 cut(s) 368, 623, 1467, 2101
MalI GATC 5 cut(s) 1351, 1421, 2180, 2283, 2411
MbiI CCGCTC 1 cut(s) 693
MboI GATC 5 cut(s) 1349, 1419, 2178, 2281, 2409
MfeI CAATTG 2 cut(s) 686, 2061
MflI RGATCY 3 cut(s) 1349, 1419, 2178
MhlI GDGCHC 3 cut(s) 58, 429, 1554
MlyI GAGTC 5 cut(s) 1260, 1332, 2007, 2032, 2044
MmeI TCCRAC 2 cut(s) 416, 1848
MroXI GAANNNNTTC 1 cut(s) 1537
MseI TTAA 6 cut(s) 26, 477, 542, 668, 2202, 2397
MslI CAYNNNNRTG 4 cut(s) 306, 1202, 1911, 1917
MspA1I CMGCKG 2 cut(s) 1290, 1493
MspI CCGG 2 cut(s) 1415, 2357
MspR9I CCNGG 4 cut(s) 69, 362, 674, 1416
MunI CAATTG 2 cut(s) 686, 2061
Mva1269I GAATGC 1 cut(s) 1489
MvaI CCWGG 3 cut(s) 69, 362, 674
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 1493, 1858, 1991, 2345
NciI CCSGG 1 cut(s) 1416
NcoI CCATGG 1 cut(s) 1333
NdeI CATATG 1 cut(s) 103
NdeII GATC 5 cut(s) 1349, 1419, 2178, 2281, 2409
NlaIV GGNNCC 3 cut(s) 1351, 1814, 2272
NmuCI GTSAC 1 cut(s) 2101
NruI TCGCGA 1 cut(s) 34
NspI RCATGY 4 cut(s) 1562, 1804, 1991, 2377
OliI CACNNNNGTG 2 cut(s) 306, 1202
PagI TCATGA 1 cut(s) 2284
PasI CCCWGGG 1 cut(s) 673
PciI ACATGT 1 cut(s) 1987
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 1489
PdmI GAANNNNTTC 1 cut(s) 1537
PfeI GAWTC 8 cut(s) 298, 352, 826, 1207, 1316, 1572, 2030, 2351
PflMI CCANNNNNTGG 2 cut(s) 1455, 2084
PkrI GCNGC 8 cut(s) 1021, 1289, 1444, 1495, 1498, 1763, 2431, 2434
PleI GAGTC 5 cut(s) 1260, 1332, 2007, 2032, 2044
PpsI GAGTC 5 cut(s) 1260, 1332, 2007, 2032, 2044
PscI ACATGT 1 cut(s) 1987
Psp124BI GAGCTC 2 cut(s) 58, 1554
Psp6I CCWGG 3 cut(s) 67, 360, 672
PspGI CCWGG 3 cut(s) 67, 360, 672
PspN4I GGNNCC 3 cut(s) 1351, 1814, 2272
PspPI GGNCC 4 cut(s) 695, 986, 1130, 1292
PstI CTGCAG 3 cut(s) 1498, 1766, 2437
PstNI CAGNNNCTG 2 cut(s) 1001, 1761
PsuI RGATCY 3 cut(s) 1349, 1419, 2178
PvuII CAGCTG 1 cut(s) 1493
RruI TCGCGA 1 cut(s) 34
RsaI GTAC 6 cut(s) 846, 1065, 1244, 1597, 1904, 1926
RsaNI GTAC 6 cut(s) 845, 1064, 1243, 1596, 1903, 1925
RseI CAYNNNNRTG 4 cut(s) 306, 1202, 1911, 1917
SacI GAGCTC 2 cut(s) 58, 1554
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 6 cut(s) 26, 477, 542, 668, 2202, 2397
SatI GCNGC 8 cut(s) 1020, 1288, 1443, 1494, 1497, 1762, 2430, 2433
Sau3AI GATC 5 cut(s) 1349, 1419, 2178, 2281, 2409
Sau96I GGNCC 4 cut(s) 695, 986, 1130, 1292
SchI GAGTC 5 cut(s) 1260, 1332, 2007, 2032, 2044
ScrFI CCNGG 4 cut(s) 69, 362, 674, 1416
SduI GDGCHC 3 cut(s) 58, 429, 1554
SfaNI GCATC 6 cut(s) 590, 881, 1898, 2218, 2224, 2245
SfcI CTRYAG 5 cut(s) 1494, 1762, 2238, 2385, 2433
SinI GGWCC 2 cut(s) 986, 1292
SmiMI CAYNNNNRTG 4 cut(s) 306, 1202, 1911, 1917
SmlI CTYRAG 3 cut(s) 1238, 1518, 1817
SmoI CTYRAG 3 cut(s) 1238, 1518, 1817
SsiI CCGC 4 cut(s) 693, 1290, 1442, 2231
SspI AATATT 1 cut(s) 481
SstI GAGCTC 2 cut(s) 58, 1554
StyD4I CCNGG 4 cut(s) 67, 360, 672, 1414
StyI CCWWGG 2 cut(s) 1270, 1333
TaaI ACNGT 2 cut(s) 85, 2456
TaiI ACGT 2 cut(s) 370, 1650
TaqI TCGA 2 cut(s) 438, 1186
TauI GCSGC 1 cut(s) 1445
TfiI GAWTC 8 cut(s) 298, 352, 826, 1207, 1316, 1572, 2030, 2351
Tru1I TTAA 6 cut(s) 26, 477, 542, 668, 2202, 2397
Tru9I TTAA 6 cut(s) 26, 477, 542, 668, 2202, 2397
TscAI CASTG 2 cut(s) 313, 1204
TseFI GTSAC 1 cut(s) 2101
TseI GCWGC 7 cut(s) 1019, 1287, 1493, 1496, 1761, 2429, 2432
Tsp45I GTSAC 1 cut(s) 2101
TspDTI ATGAA 7 cut(s) 57, 795, 1530, 1593, 1935, 2173, 2301
TspRI CASTG 2 cut(s) 313, 1204
Van91I CCANNNNNTGG 2 cut(s) 1455, 2084
VpaK11BI GGWCC 2 cut(s) 986, 1292
XagI CCTNNNNNAGG 1 cut(s) 993
XapI RAATTY 8 cut(s) 124, 508, 646, 910, 1249, 1278, 1840, 2288
XbaI TCTAGA 4 cut(s) 355, 1123, 1219, 2224
XceI RCATGY 4 cut(s) 1562, 1804, 1991, 2377
XcmI CCANNNNNNNNNTGG 2 cut(s) 930, 1340
XmiI GTMKAC 1 cut(s) 1026
XmnI GAANNNNTTC 1 cut(s) 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.