Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 11 - 58 | 1.2e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 160 |
| AciI | CCGC | 2 cut(s) | 89, 141 |
| AcsI | RAATTY | 1 cut(s) | 94 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 160, 502 |
| AflII | CTTAAG | 1 cut(s) | 407 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 487 |
| AjnI | CCWGG | 2 cut(s) | 353, 420 |
| AluBI | AGCT | 3 cut(s) | 509, 525, 552 |
| AluI | AGCT | 3 cut(s) | 509, 525, 552 |
| Alw21I | GWGCWC | 1 cut(s) | 527 |
| ApeKI | GCWGC | 2 cut(s) | 168, 395 |
| ApoI | RAATTY | 1 cut(s) | 94 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 33, 65 |
| AsuHPI | GGTGA | 3 cut(s) | 40, 298, 377 |
| BanII | GRGCYC | 1 cut(s) | 527 |
| Bbv12I | GWGCWC | 1 cut(s) | 527 |
| BbvI | GCAGC | 2 cut(s) | 155, 407 |
| BccI | CCATC | 2 cut(s) | 203, 256 |
| BceAI | ACGGC | 1 cut(s) | 462 |
| BciT130I | CCWGG | 2 cut(s) | 355, 422 |
| BfaI | CTAG | 4 cut(s) | 39, 318, 345, 371 |
| BfrI | CTTAAG | 1 cut(s) | 407 |
| BisI | GCNGC | 2 cut(s) | 169, 396 |
| BlsI | GCNGC | 2 cut(s) | 170, 397 |
| Bme1390I | CCNGG | 2 cut(s) | 355, 422 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 487 |
| BmiI | GGNNCC | 2 cut(s) | 216, 419 |
| BmrFI | CCNGG | 2 cut(s) | 355, 422 |
| BmsI | GCATC | 2 cut(s) | 283, 502 |
| BpmI | CTGGAG | 1 cut(s) | 348 |
| BsaJI | CCNNGG | 1 cut(s) | 353 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 188, 218 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 160, 502 |
| Bse1I | ACTGG | 2 cut(s) | 30, 218 |
| Bse3DI | GCAATG | 1 cut(s) | 234 |
| BseBI | CCWGG | 2 cut(s) | 355, 422 |
| BseDI | CCNNGG | 1 cut(s) | 353 |
| BseGI | GGATG | 2 cut(s) | 10, 150 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 160, 502 |
| BseMI | GCAATG | 1 cut(s) | 234 |
| BseNI | ACTGG | 2 cut(s) | 30, 218 |
| BseXI | GCAGC | 2 cut(s) | 155, 407 |
| BsiHKAI | GWGCWC | 1 cut(s) | 527 |
| BslFI | GGGAC | 2 cut(s) | 283, 325 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 160, 502 |
| BsmFI | GGGAC | 2 cut(s) | 283, 325 |
| Bsp1286I | GDGCHC | 1 cut(s) | 527 |
| Bsp143I | GATC | 3 cut(s) | 30, 268, 367 |
| BspACI | CCGC | 2 cut(s) | 89, 141 |
| BspLI | GGNNCC | 2 cut(s) | 216, 419 |
| BspQI | GCTCTTC | 1 cut(s) | 3 |
| BspTI | CTTAAG | 1 cut(s) | 407 |
| BsrDI | GCAATG | 1 cut(s) | 234 |
| BsrI | ACTGG | 2 cut(s) | 30, 218 |
| BssECI | CCNNGG | 1 cut(s) | 353 |
| BssMI | GATC | 3 cut(s) | 30, 268, 367 |
| Bst2UI | CCWGG | 2 cut(s) | 355, 422 |
| Bst4CI | ACNGT | 1 cut(s) | 286 |
| Bst6I | CTCTTC | 1 cut(s) | 3 |
| BstAFI | CTTAAG | 1 cut(s) | 407 |
| BstC8I | GCNNGC | 1 cut(s) | 350 |
| BstF5I | GGATG | 2 cut(s) | 10, 150 |
| BstKTI | GATC | 3 cut(s) | 33, 271, 370 |
| BstMBI | GATC | 3 cut(s) | 30, 268, 367 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 401, 558 |
| BstNI | CCWGG | 2 cut(s) | 355, 422 |
| BstNSI | RCATGY | 1 cut(s) | 83 |
| BstSCI | CCNGG | 2 cut(s) | 353, 420 |
| BstV1I | GCAGC | 2 cut(s) | 155, 407 |
| BtgZI | GCGATG | 1 cut(s) | 275 |
| BtsCI | GGATG | 2 cut(s) | 10, 150 |
| Cac8I | GCNNGC | 1 cut(s) | 350 |
| CseI | GACGC | 1 cut(s) | 285 |
| CviAII | CATG | 2 cut(s) | 80, 155 |
| DpnI | GATC | 3 cut(s) | 32, 270, 369 |
| DpnII | GATC | 3 cut(s) | 30, 268, 367 |
| DriI | GACNNNNNGTC | 1 cut(s) | 487 |
| Eam1104I | CTCTTC | 1 cut(s) | 3 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 487 |
| EarI | CTCTTC | 1 cut(s) | 3 |
| Ecl136II | GAGCTC | 1 cut(s) | 525 |
| Eco24I | GRGCYC | 1 cut(s) | 527 |
| Eco53kI | GAGCTC | 1 cut(s) | 525 |
| EcoICRI | GAGCTC | 1 cut(s) | 525 |
| EcoRII | CCWGG | 2 cut(s) | 353, 420 |
| EcoT38I | GRGCYC | 1 cut(s) | 527 |
| FaeI | CATG | 2 cut(s) | 83, 158 |
| FaiI | YATR | 7 cut(s) | 81, 111, 156, 176, 380, 414, 536 |
| FaqI | GGGAC | 2 cut(s) | 283, 325 |
| FatI | CATG | 2 cut(s) | 79, 154 |
| Fnu4HI | GCNGC | 2 cut(s) | 169, 396 |
| FokI | GGATG | 2 cut(s) | 17, 137 |
| FriOI | GRGCYC | 1 cut(s) | 527 |
| Fsp4HI | GCNGC | 2 cut(s) | 169, 396 |
| FspBI | CTAG | 4 cut(s) | 39, 318, 345, 371 |
| GluI | GCNGC | 2 cut(s) | 169, 396 |
| GsuI | CTGGAG | 1 cut(s) | 348 |
| HgaI | GACGC | 1 cut(s) | 285 |
| Hin1II | CATG | 2 cut(s) | 83, 158 |
| HinfI | GANTC | 1 cut(s) | 18 |
| HphI | GGTGA | 3 cut(s) | 40, 298, 377 |
| Hpy188I | TCNGA | 2 cut(s) | 23, 208 |
| Hpy188III | TCNNGA | 1 cut(s) | 327 |
| Hpy99I | CGWCG | 1 cut(s) | 286 |
| HpyAV | CCTTC | 1 cut(s) | 315 |
| HpyCH4III | ACNGT | 1 cut(s) | 286 |
| HpyCH4IV | ACGT | 1 cut(s) | 338 |
| HpyCH4V | TGCA | 3 cut(s) | 79, 227, 515 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 401, 558 |
| HpySE526I | ACGT | 1 cut(s) | 338 |
| Hsp92II | CATG | 2 cut(s) | 83, 158 |
| Kzo9I | GATC | 3 cut(s) | 30, 268, 367 |
| LguI | GCTCTTC | 1 cut(s) | 3 |
| LmnI | GCTCC | 2 cut(s) | 190, 522 |
| Lsp1109I | GCAGC | 2 cut(s) | 155, 407 |
| LweI | GCATC | 2 cut(s) | 283, 502 |
| MaeI | CTAG | 4 cut(s) | 39, 318, 345, 371 |
| MaeII | ACGT | 1 cut(s) | 338 |
| MaeIII | GTNAC | 1 cut(s) | 334 |
| MalI | GATC | 3 cut(s) | 32, 270, 369 |
| MboI | GATC | 3 cut(s) | 30, 268, 367 |
| MboII | GAAGA | 3 cut(s) | 20, 424, 487 |
| MhlI | GDGCHC | 1 cut(s) | 527 |
| MluCI | AATT | 1 cut(s) | 94 |
| MmeI | TCCRAC | 1 cut(s) | 335 |
| MnlI | CCTC | 3 cut(s) | 157, 190, 495 |
| MseI | TTAA | 2 cut(s) | 120, 408 |
| MspCI | CTTAAG | 1 cut(s) | 407 |
| MspR9I | CCNGG | 2 cut(s) | 355, 422 |
| MvaI | CCWGG | 2 cut(s) | 355, 422 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 401, 558 |
| NdeII | GATC | 3 cut(s) | 30, 268, 367 |
| NlaIII | CATG | 2 cut(s) | 83, 158 |
| NlaIV | GGNNCC | 2 cut(s) | 216, 419 |
| NspI | RCATGY | 1 cut(s) | 83 |
| PciSI | GCTCTTC | 1 cut(s) | 3 |
| PfeI | GAWTC | 1 cut(s) | 18 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 160 |
| PkrI | GCNGC | 2 cut(s) | 170, 397 |
| Psp124BI | GAGCTC | 1 cut(s) | 527 |
| Psp6I | CCWGG | 2 cut(s) | 353, 420 |
| PspGI | CCWGG | 2 cut(s) | 353, 420 |
| PspN4I | GGNNCC | 2 cut(s) | 216, 419 |
| SacI | GAGCTC | 1 cut(s) | 527 |
| SapI | GCTCTTC | 1 cut(s) | 3 |
| SaqAI | TTAA | 2 cut(s) | 120, 408 |
| SatI | GCNGC | 2 cut(s) | 169, 396 |
| Sau3AI | GATC | 3 cut(s) | 30, 268, 367 |
| ScrFI | CCNGG | 2 cut(s) | 355, 422 |
| SduI | GDGCHC | 1 cut(s) | 527 |
| SetI | ASST | 4 cut(s) | 341, 511, 527, 554 |
| SfaNI | GCATC | 2 cut(s) | 283, 502 |
| SmlI | CTYRAG | 1 cut(s) | 407 |
| SmoI | CTYRAG | 1 cut(s) | 407 |
| Sse9I | AATT | 1 cut(s) | 94 |
| SsiI | CCGC | 2 cut(s) | 89, 141 |
| SspMI | CTAG | 4 cut(s) | 39, 318, 345, 371 |
| SstI | GAGCTC | 1 cut(s) | 527 |
| StyD4I | CCNGG | 2 cut(s) | 353, 420 |
| TaaI | ACNGT | 1 cut(s) | 286 |
| TaiI | ACGT | 1 cut(s) | 341 |
| TaqI | TCGA | 2 cut(s) | 33, 275 |
| TasI | AATT | 1 cut(s) | 94 |
| TfiI | GAWTC | 1 cut(s) | 18 |
| Tru1I | TTAA | 2 cut(s) | 120, 408 |
| Tru9I | TTAA | 2 cut(s) | 120, 408 |
| TseI | GCWGC | 2 cut(s) | 168, 395 |
| TspDTI | ATGAA | 4 cut(s) | 21, 126, 139, 488 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 160 |
| Vha464I | CTTAAG | 1 cut(s) | 407 |
| XapI | RAATTY | 1 cut(s) | 94 |
| XceI | RCATGY | 1 cut(s) | 83 |
| XspI | CTAG | 4 cut(s) | 39, 318, 345, 371 |