Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 552 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 199 |
| AccII | CGCG | 1 cut(s) | 46 |
| AciI | CCGC | 2 cut(s) | 65, 74 |
| AclWI | GGATC | 6 cut(s) | 184, 244, 424, 430, 478, 491 |
| AcyI | GRCGYC | 1 cut(s) | 553 |
| AdeI | CACNNNGTG | 1 cut(s) | 13 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 199, 379, 462 |
| AflIII | ACRYGT | 1 cut(s) | 430 |
| AgeI | ACCGGT | 1 cut(s) | 90 |
| AgsI | TTSAA | 2 cut(s) | 221, 577 |
| AjiI | CACGTC | 1 cut(s) | 431 |
| AjnI | CCWGG | 1 cut(s) | 640 |
| AluBI | AGCT | 1 cut(s) | 158 |
| AluI | AGCT | 1 cut(s) | 158 |
| Alw26I | GTCTC | 2 cut(s) | 505, 619 |
| AlwI | GGATC | 6 cut(s) | 184, 244, 424, 430, 478, 491 |
| AoxI | GGCC | 2 cut(s) | 118, 370 |
| ApeKI | GCWGC | 1 cut(s) | 398 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 504, 536 |
| AsiGI | ACCGGT | 1 cut(s) | 90 |
| AspLEI | GCGC | 2 cut(s) | 46, 555 |
| AspS9I | GGNCC | 4 cut(s) | 119, 263, 317, 370 |
| AsuC2I | CCSGG | 2 cut(s) | 11, 321 |
| AsuHPI | GGTGA | 2 cut(s) | 533, 634 |
| AvaII | GGWCC | 2 cut(s) | 263, 317 |
| BaeGI | GKGCMC | 1 cut(s) | 327 |
| BamHI | GGATCC | 1 cut(s) | 483 |
| BanI | GGYRCC | 1 cut(s) | 552 |
| BauI | CACGAG | 1 cut(s) | 326 |
| BbsI | GAAGAC | 1 cut(s) | 377 |
| BbvI | GCAGC | 1 cut(s) | 385 |
| BccI | CCATC | 1 cut(s) | 280 |
| BceAI | ACGGC | 1 cut(s) | 57 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 274, 308, 434, 468 |
| BciT130I | CCWGG | 1 cut(s) | 642 |
| BcnI | CCSGG | 2 cut(s) | 11, 321 |
| BcoDI | GTCTC | 2 cut(s) | 505, 619 |
| BfaI | CTAG | 1 cut(s) | 296 |
| BfmI | CTRYAG | 1 cut(s) | 153 |
| BfoI | RGCGCY | 1 cut(s) | 556 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 117 |
| BisI | GCNGC | 2 cut(s) | 75, 399 |
| BlsI | GCNGC | 2 cut(s) | 76, 400 |
| Bme1390I | CCNGG | 3 cut(s) | 11, 321, 642 |
| Bme18I | GGWCC | 2 cut(s) | 263, 317 |
| BmgBI | CACGTC | 1 cut(s) | 431 |
| BmgT120I | GGNCC | 4 cut(s) | 119, 263, 317, 370 |
| BmiI | GGNNCC | 3 cut(s) | 333, 485, 554 |
| BmrFI | CCNGG | 3 cut(s) | 11, 321, 642 |
| BmsI | GCATC | 3 cut(s) | 349, 516, 627 |
| BpiI | GAAGAC | 1 cut(s) | 377 |
| BpuMI | CCSGG | 2 cut(s) | 11, 321 |
| BsaHI | GRCGYC | 1 cut(s) | 553 |
| BsaJI | CCNNGG | 2 cut(s) | 266, 320 |
| BsaWI | WCCGGW | 2 cut(s) | 90, 376 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 199, 379, 462 |
| Bse118I | RCCGGY | 1 cut(s) | 90 |
| BseBI | CCWGG | 1 cut(s) | 642 |
| BseDI | CCNNGG | 2 cut(s) | 266, 320 |
| BseGI | GGATG | 2 cut(s) | 531, 637 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 199, 379, 462 |
| BseSI | GKGCMC | 1 cut(s) | 327 |
| BseXI | GCAGC | 1 cut(s) | 385 |
| BsgI | GTGCAG | 1 cut(s) | 384 |
| Bsh1236I | CGCG | 1 cut(s) | 46 |
| BshFI | GGCC | 2 cut(s) | 120, 372 |
| BshNI | GGYRCC | 1 cut(s) | 552 |
| BshTI | ACCGGT | 1 cut(s) | 90 |
| BsiSI | CCGG | 4 cut(s) | 11, 91, 320, 377 |
| BslFI | GGGAC | 2 cut(s) | 163, 441 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 199, 379, 462 |
| BsmAI | GTCTC | 2 cut(s) | 505, 619 |
| BsmFI | GGGAC | 2 cut(s) | 163, 441 |
| BsnI | GGCC | 2 cut(s) | 120, 372 |
| Bsp1286I | GDGCHC | 1 cut(s) | 327 |
| Bsp143I | GATC | 6 cut(s) | 22, 189, 249, 416, 435, 483 |
| BspACI | CCGC | 2 cut(s) | 65, 74 |
| BspANI | GGCC | 2 cut(s) | 120, 372 |
| BspFNI | CGCG | 1 cut(s) | 46 |
| BspLI | GGNNCC | 3 cut(s) | 333, 485, 554 |
| BspPI | GGATC | 6 cut(s) | 184, 244, 424, 430, 478, 491 |
| BspQI | GCTCTTC | 1 cut(s) | 119 |
| BspT107I | GGYRCC | 1 cut(s) | 552 |
| BsrFI | RCCGGY | 1 cut(s) | 90 |
| BssAI | RCCGGY | 1 cut(s) | 90 |
| BssECI | CCNNGG | 2 cut(s) | 266, 320 |
| BssMI | GATC | 6 cut(s) | 22, 189, 249, 416, 435, 483 |
| BssNI | GRCGYC | 1 cut(s) | 553 |
| BssSI | CACGAG | 1 cut(s) | 326 |
| BssT1I | CCWWGG | 1 cut(s) | 266 |
| Bst2BI | CACGAG | 1 cut(s) | 326 |
| Bst2UI | CCWGG | 1 cut(s) | 642 |
| Bst4CI | ACNGT | 2 cut(s) | 549, 563 |
| Bst6I | CTCTTC | 1 cut(s) | 119 |
| BstACI | GRCGYC | 1 cut(s) | 553 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 3 cut(s) | 72, 84, 113 |
| BstDEI | CTNAG | 1 cut(s) | 515 |
| BstF5I | GGATG | 2 cut(s) | 531, 637 |
| BstFNI | CGCG | 1 cut(s) | 46 |
| BstH2I | RGCGCY | 1 cut(s) | 556 |
| BstHHI | GCGC | 2 cut(s) | 46, 555 |
| BstKTI | GATC | 6 cut(s) | 25, 192, 252, 419, 438, 486 |
| BstMAI | GTCTC | 2 cut(s) | 505, 619 |
| BstMBI | GATC | 6 cut(s) | 22, 189, 249, 416, 435, 483 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 41, 71, 83, 117, 126, 359 |
| BstNI | CCWGG | 1 cut(s) | 642 |
| BstSCI | CCNGG | 3 cut(s) | 9, 319, 640 |
| BstSFI | CTRYAG | 1 cut(s) | 153 |
| BstSLI | GKGCMC | 1 cut(s) | 327 |
| BstUI | CGCG | 1 cut(s) | 46 |
| BstV1I | GCAGC | 1 cut(s) | 385 |
| BstV2I | GAAGAC | 1 cut(s) | 377 |
| BstX2I | RGATCY | 2 cut(s) | 249, 483 |
| BstYI | RGATCY | 2 cut(s) | 249, 483 |
| BsuRI | GGCC | 2 cut(s) | 120, 372 |
| BtrI | CACGTC | 1 cut(s) | 431 |
| BtsCI | GGATG | 2 cut(s) | 531, 637 |
| BtsI | GCAGTG | 1 cut(s) | 335 |
| BtsIMutI | CAGTG | 2 cut(s) | 335, 401 |
| Cac8I | GCNNGC | 3 cut(s) | 72, 84, 113 |
| CfoI | GCGC | 2 cut(s) | 46, 555 |
| Cfr10I | RCCGGY | 1 cut(s) | 90 |
| Cfr13I | GGNCC | 4 cut(s) | 119, 263, 317, 370 |
| CpoI | CGGWCCG | 1 cut(s) | 317 |
| CspAI | ACCGGT | 1 cut(s) | 90 |
| CspI | CGGWCCG | 1 cut(s) | 317 |
| CviAII | CATG | 3 cut(s) | 194, 257, 354 |
| DdeI | CTNAG | 1 cut(s) | 515 |
| DinI | GGCGCC | 1 cut(s) | 554 |
| DpnI | GATC | 6 cut(s) | 24, 191, 251, 418, 437, 485 |
| DpnII | GATC | 6 cut(s) | 22, 189, 249, 416, 435, 483 |
| DraIII | CACNNNGTG | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 1 cut(s) | 119 |
| EarI | CTCTTC | 1 cut(s) | 119 |
| Eco130I | CCWWGG | 1 cut(s) | 266 |
| Eco47I | GGWCC | 2 cut(s) | 263, 317 |
| EcoO109I | RGGNCCY | 2 cut(s) | 263, 370 |
| EcoRII | CCWGG | 1 cut(s) | 640 |
| EcoT14I | CCWWGG | 1 cut(s) | 266 |
| EgeI | GGCGCC | 1 cut(s) | 554 |
| EheI | GGCGCC | 1 cut(s) | 554 |
| ErhI | CCWWGG | 1 cut(s) | 266 |
| FaeI | CATG | 3 cut(s) | 197, 260, 357 |
| FaqI | GGGAC | 2 cut(s) | 163, 441 |
| FatI | CATG | 3 cut(s) | 193, 256, 353 |
| FauI | CCCGC | 1 cut(s) | 58 |
| Fnu4HI | GCNGC | 2 cut(s) | 75, 399 |
| FokI | GGATG | 2 cut(s) | 538, 644 |
| Fsp4HI | GCNGC | 2 cut(s) | 75, 399 |
| FspBI | CTAG | 1 cut(s) | 296 |
| GlaI | GCGC | 2 cut(s) | 45, 554 |
| GluI | GCNGC | 2 cut(s) | 75, 399 |
| HaeII | RGCGCY | 1 cut(s) | 556 |
| HaeIII | GGCC | 2 cut(s) | 120, 372 |
| HapII | CCGG | 4 cut(s) | 11, 91, 320, 377 |
| HhaI | GCGC | 2 cut(s) | 46, 555 |
| Hin1I | GRCGYC | 1 cut(s) | 553 |
| Hin1II | CATG | 3 cut(s) | 197, 260, 357 |
| Hin6I | GCGC | 2 cut(s) | 44, 553 |
| HinP1I | GCGC | 2 cut(s) | 44, 553 |
| HpaII | CCGG | 4 cut(s) | 11, 91, 320, 377 |
| HphI | GGTGA | 2 cut(s) | 533, 634 |
| Hpy188I | TCNGA | 4 cut(s) | 465, 488, 586, 599 |
| Hpy188III | TCNNGA | 1 cut(s) | 180 |
| Hpy99I | CGWCG | 1 cut(s) | 510 |
| HpyAV | CCTTC | 2 cut(s) | 383, 460 |
| HpyCH4III | ACNGT | 2 cut(s) | 549, 563 |
| HpyCH4IV | ACGT | 1 cut(s) | 430 |
| HpyCH4V | TGCA | 6 cut(s) | 82, 256, 340, 362, 401, 618 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 41, 71, 83, 117, 126, 359 |
| HpyF3I | CTNAG | 1 cut(s) | 515 |
| HpySE526I | ACGT | 1 cut(s) | 430 |
| Hsp92I | GRCGYC | 1 cut(s) | 553 |
| Hsp92II | CATG | 3 cut(s) | 197, 260, 357 |
| HspAI | GCGC | 2 cut(s) | 44, 553 |
| KasI | GGCGCC | 1 cut(s) | 552 |
| Kzo9I | GATC | 6 cut(s) | 22, 189, 249, 416, 435, 483 |
| LguI | GCTCTTC | 1 cut(s) | 119 |
| Lsp1109I | GCAGC | 1 cut(s) | 385 |
| LweI | GCATC | 3 cut(s) | 349, 516, 627 |
| MaeI | CTAG | 1 cut(s) | 296 |
| MaeII | ACGT | 1 cut(s) | 430 |
| MalI | GATC | 6 cut(s) | 24, 191, 251, 418, 437, 485 |
| MboI | GATC | 6 cut(s) | 22, 189, 249, 416, 435, 483 |
| MboII | GAAGA | 2 cut(s) | 136, 377 |
| MflI | RGATCY | 2 cut(s) | 249, 483 |
| MhlI | GDGCHC | 1 cut(s) | 327 |
| MluCI | AATT | 1 cut(s) | 221 |
| Mly113I | GGCGCC | 1 cut(s) | 553 |
| MmeI | TCCRAC | 1 cut(s) | 577 |
| MnlI | CCTC | 5 cut(s) | 226, 254, 293, 322, 580 |
| MseI | TTAA | 2 cut(s) | 366, 569 |
| MspI | CCGG | 4 cut(s) | 11, 91, 320, 377 |
| MspR9I | CCNGG | 3 cut(s) | 11, 321, 642 |
| MvaI | CCWGG | 1 cut(s) | 642 |
| MvnI | CGCG | 1 cut(s) | 46 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 41, 71, 83, 117, 126, 359 |
| NarI | GGCGCC | 1 cut(s) | 553 |
| NciI | CCSGG | 2 cut(s) | 11, 321 |
| NdeII | GATC | 6 cut(s) | 22, 189, 249, 416, 435, 483 |
| NlaIII | CATG | 3 cut(s) | 197, 260, 357 |
| NlaIV | GGNNCC | 3 cut(s) | 333, 485, 554 |
| PciSI | GCTCTTC | 1 cut(s) | 119 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 436 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 199 |
| PinAI | ACCGGT | 1 cut(s) | 90 |
| PkrI | GCNGC | 2 cut(s) | 76, 400 |
| PluTI | GGCGCC | 1 cut(s) | 556 |
| PpuMI | RGGWCCY | 1 cut(s) | 263 |
| Psp5II | RGGWCCY | 1 cut(s) | 263 |
| Psp6I | CCWGG | 1 cut(s) | 640 |
| PspGI | CCWGG | 1 cut(s) | 640 |
| PspN4I | GGNNCC | 3 cut(s) | 333, 485, 554 |
| PspPI | GGNCC | 4 cut(s) | 119, 263, 317, 370 |
| PspPPI | RGGWCCY | 1 cut(s) | 263 |
| PsuI | RGATCY | 2 cut(s) | 249, 483 |
| Rsr2I | CGGWCCG | 1 cut(s) | 317 |
| RsrII | CGGWCCG | 1 cut(s) | 317 |
| SapI | GCTCTTC | 1 cut(s) | 119 |
| SaqAI | TTAA | 2 cut(s) | 366, 569 |
| SatI | GCNGC | 2 cut(s) | 75, 399 |
| Sau3AI | GATC | 6 cut(s) | 22, 189, 249, 416, 435, 483 |
| Sau96I | GGNCC | 4 cut(s) | 119, 263, 317, 370 |
| ScrFI | CCNGG | 3 cut(s) | 11, 321, 642 |
| SduI | GDGCHC | 1 cut(s) | 327 |
| SetI | ASST | 8 cut(s) | 160, 268, 304, 333, 433, 584, 591, 624 |
| SfaNI | GCATC | 3 cut(s) | 349, 516, 627 |
| SfcI | CTRYAG | 1 cut(s) | 153 |
| SfoI | GGCGCC | 1 cut(s) | 554 |
| SinI | GGWCC | 2 cut(s) | 263, 317 |
| Sse9I | AATT | 1 cut(s) | 221 |
| SsiI | CCGC | 2 cut(s) | 65, 74 |
| SspDI | GGCGCC | 1 cut(s) | 552 |
| SspMI | CTAG | 1 cut(s) | 296 |
| StyD4I | CCNGG | 3 cut(s) | 9, 319, 640 |
| StyI | CCWWGG | 1 cut(s) | 266 |
| TaaI | ACNGT | 2 cut(s) | 549, 563 |
| TaiI | ACGT | 1 cut(s) | 433 |
| TaqI | TCGA | 3 cut(s) | 444, 505, 534 |
| TaqII | GACCGA | 1 cut(s) | 305 |
| TasI | AATT | 1 cut(s) | 221 |
| TauI | GCSGC | 1 cut(s) | 77 |
| Tru1I | TTAA | 2 cut(s) | 366, 569 |
| Tru9I | TTAA | 2 cut(s) | 366, 569 |
| TscAI | CASTG | 2 cut(s) | 342, 408 |
| TseI | GCWGC | 1 cut(s) | 398 |
| TspDTI | ATGAA | 3 cut(s) | 133, 210, 321 |
| TspGWI | ACGGA | 2 cut(s) | 428, 523 |
| TspRI | CASTG | 2 cut(s) | 342, 408 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 199 |
| VpaK11BI | GGWCC | 2 cut(s) | 263, 317 |
| XspI | CTAG | 1 cut(s) | 296 |