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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 232 |
| AccB1I | GGYRCC | 1 cut(s) | 184 |
| AclWI | GGATC | 1 cut(s) | 70 |
| AcsI | RAATTY | 1 cut(s) | 210 |
| AcuI | CTGAAG | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 385, 451 |
| AflIII | ACRYGT | 1 cut(s) | 32 |
| AgsI | TTSAA | 4 cut(s) | 370, 426, 530, 546 |
| AjnI | CCWGG | 1 cut(s) | 67 |
| AluBI | AGCT | 2 cut(s) | 313, 374 |
| AluI | AGCT | 2 cut(s) | 313, 374 |
| AlwI | GGATC | 1 cut(s) | 70 |
| AoxI | GGCC | 1 cut(s) | 514 |
| ApeKI | GCWGC | 1 cut(s) | 146 |
| ApoI | RAATTY | 1 cut(s) | 210 |
| AspS9I | GGNCC | 2 cut(s) | 25, 514 |
| AsuHPI | GGTGA | 3 cut(s) | 55, 83, 427 |
| AvaII | GGWCC | 1 cut(s) | 25 |
| BanI | GGYRCC | 1 cut(s) | 184 |
| BbvI | GCAGC | 1 cut(s) | 133 |
| BccI | CCATC | 4 cut(s) | 95, 229, 469, 493 |
| BceAI | ACGGC | 1 cut(s) | 192 |
| BciT130I | CCWGG | 1 cut(s) | 69 |
| BclI | TGATCA | 1 cut(s) | 156 |
| BfaI | CTAG | 2 cut(s) | 215, 314 |
| BfuAI | ACCTGC | 1 cut(s) | 232 |
| BisI | GCNGC | 1 cut(s) | 147 |
| BlsI | GCNGC | 1 cut(s) | 148 |
| Bme1390I | CCNGG | 1 cut(s) | 69 |
| Bme18I | GGWCC | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 2 cut(s) | 25, 514 |
| BmiI | GGNNCC | 2 cut(s) | 186, 363 |
| BmrFI | CCNGG | 1 cut(s) | 69 |
| BmsI | GCATC | 3 cut(s) | 98, 102, 471 |
| Bpu10I | CCTNAGC | 2 cut(s) | 180, 240 |
| BsaAI | YACGTR | 1 cut(s) | 35 |
| BsaWI | WCCGGW | 1 cut(s) | 229 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 385, 451 |
| BseBI | CCWGG | 1 cut(s) | 69 |
| BseGI | GGATG | 1 cut(s) | 466 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 385, 451 |
| BseRI | GAGGAG | 1 cut(s) | 425 |
| BseXI | GCAGC | 1 cut(s) | 133 |
| BsgI | GTGCAG | 1 cut(s) | 210 |
| BshFI | GGCC | 1 cut(s) | 516 |
| BshNI | GGYRCC | 1 cut(s) | 184 |
| BsiSI | CCGG | 1 cut(s) | 230 |
| BslFI | GGGAC | 2 cut(s) | 306, 428 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 385, 451 |
| BsmFI | GGGAC | 2 cut(s) | 306, 428 |
| BsnI | GGCC | 1 cut(s) | 516 |
| Bsp143I | GATC | 4 cut(s) | 62, 73, 156, 280 |
| BspANI | GGCC | 1 cut(s) | 516 |
| BspLI | GGNNCC | 2 cut(s) | 186, 363 |
| BspMI | ACCTGC | 1 cut(s) | 232 |
| BspPI | GGATC | 1 cut(s) | 70 |
| BspT107I | GGYRCC | 1 cut(s) | 184 |
| BssMI | GATC | 4 cut(s) | 62, 73, 156, 280 |
| Bst2UI | CCWGG | 1 cut(s) | 69 |
| Bst6I | CTCTTC | 1 cut(s) | 465 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 224 |
| BstBAI | YACGTR | 1 cut(s) | 35 |
| BstDEI | CTNAG | 2 cut(s) | 180, 240 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 383 |
| BstF5I | GGATG | 1 cut(s) | 466 |
| BstKTI | GATC | 4 cut(s) | 65, 76, 159, 283 |
| BstMBI | GATC | 4 cut(s) | 62, 73, 156, 280 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 224 |
| BstNI | CCWGG | 1 cut(s) | 69 |
| BstNSI | RCATGY | 1 cut(s) | 11 |
| BstSCI | CCNGG | 1 cut(s) | 67 |
| BstV1I | GCAGC | 1 cut(s) | 133 |
| BstX2I | RGATCY | 1 cut(s) | 62 |
| BstYI | RGATCY | 1 cut(s) | 62 |
| BsuRI | GGCC | 1 cut(s) | 516 |
| BtsCI | GGATG | 1 cut(s) | 466 |
| BtsIMutI | CAGTG | 1 cut(s) | 166 |
| BveI | ACCTGC | 1 cut(s) | 232 |
| Cfr13I | GGNCC | 2 cut(s) | 25, 514 |
| CviAII | CATG | 2 cut(s) | 8, 579 |
| CviJI | RGCY | 6 cut(s) | 105, 179, 239, 313, 374, 516 |
| CviKI_1 | RGCY | 6 cut(s) | 105, 179, 239, 313, 374, 516 |
| DdeI | CTNAG | 2 cut(s) | 180, 240 |
| DpnI | GATC | 4 cut(s) | 64, 75, 158, 282 |
| DpnII | GATC | 4 cut(s) | 62, 73, 156, 280 |
| Eam1104I | CTCTTC | 1 cut(s) | 465 |
| EarI | CTCTTC | 1 cut(s) | 465 |
| Eco47I | GGWCC | 1 cut(s) | 25 |
| Eco57I | CTGAAG | 1 cut(s) | 137 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 383 |
| EcoO109I | RGGNCCY | 1 cut(s) | 514 |
| EcoRII | CCWGG | 1 cut(s) | 67 |
| FaeI | CATG | 2 cut(s) | 11, 582 |
| FaiI | YATR | 4 cut(s) | 9, 191, 467, 580 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 363, 395 |
| FaqI | GGGAC | 2 cut(s) | 306, 428 |
| FatI | CATG | 2 cut(s) | 7, 578 |
| FbaI | TGATCA | 1 cut(s) | 156 |
| Fnu4HI | GCNGC | 1 cut(s) | 147 |
| FokI | GGATG | 1 cut(s) | 473 |
| Fsp4HI | GCNGC | 1 cut(s) | 147 |
| FspBI | CTAG | 2 cut(s) | 215, 314 |
| GluI | GCNGC | 1 cut(s) | 147 |
| HaeIII | GGCC | 1 cut(s) | 516 |
| HapII | CCGG | 1 cut(s) | 230 |
| Hin1II | CATG | 2 cut(s) | 11, 582 |
| HinfI | GANTC | 2 cut(s) | 196, 434 |
| HpaII | CCGG | 1 cut(s) | 230 |
| HphI | GGTGA | 3 cut(s) | 55, 83, 427 |
| Hpy166II | GTNNAC | 2 cut(s) | 164, 540 |
| Hpy188I | TCNGA | 2 cut(s) | 439, 490 |
| Hpy188III | TCNNGA | 1 cut(s) | 530 |
| Hpy8I | GTNNAC | 2 cut(s) | 164, 540 |
| HpyAV | CCTTC | 1 cut(s) | 27 |
| HpyCH4IV | ACGT | 2 cut(s) | 34, 561 |
| HpyCH4V | TGCA | 2 cut(s) | 227, 578 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 224 |
| HpyF3I | CTNAG | 2 cut(s) | 180, 240 |
| HpySE526I | ACGT | 2 cut(s) | 34, 561 |
| Hsp92II | CATG | 2 cut(s) | 11, 582 |
| Ksp22I | TGATCA | 1 cut(s) | 156 |
| Kzo9I | GATC | 4 cut(s) | 62, 73, 156, 280 |
| LpnPI | CCDG | 7 cut(s) | 26, 54, 81, 237, 243, 299, 366 |
| Lsp1109I | GCAGC | 1 cut(s) | 133 |
| LweI | GCATC | 3 cut(s) | 98, 102, 471 |
| MaeI | CTAG | 2 cut(s) | 215, 314 |
| MaeII | ACGT | 2 cut(s) | 34, 561 |
| MalI | GATC | 4 cut(s) | 64, 75, 158, 282 |
| MboI | GATC | 4 cut(s) | 62, 73, 156, 280 |
| MboII | GAAGA | 3 cut(s) | 319, 482, 566 |
| MfeI | CAATTG | 2 cut(s) | 405, 546 |
| MflI | RGATCY | 1 cut(s) | 62 |
| MluCI | AATT | 4 cut(s) | 49, 210, 405, 546 |
| MlyI | GAGTC | 1 cut(s) | 205 |
| MnlI | CCTC | 8 cut(s) | 24, 241, 279, 403, 406, 445, 526, 544 |
| MseI | TTAA | 1 cut(s) | 332 |
| MslI | CAYNNNNRTG | 1 cut(s) | 276 |
| MspI | CCGG | 1 cut(s) | 230 |
| MspR9I | CCNGG | 1 cut(s) | 69 |
| MunI | CAATTG | 2 cut(s) | 405, 546 |
| MvaI | CCWGG | 1 cut(s) | 69 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 224 |
| NdeII | GATC | 4 cut(s) | 62, 73, 156, 280 |
| NlaIII | CATG | 2 cut(s) | 11, 582 |
| NlaIV | GGNNCC | 2 cut(s) | 186, 363 |
| NspI | RCATGY | 1 cut(s) | 11 |
| PfeI | GAWTC | 1 cut(s) | 434 |
| PflFI | GACNNNGTC | 1 cut(s) | 380 |
| PkrI | GCNGC | 1 cut(s) | 148 |
| PleI | GAGTC | 1 cut(s) | 204 |
| PpsI | GAGTC | 1 cut(s) | 204 |
| Ppu21I | YACGTR | 1 cut(s) | 35 |
| Psp6I | CCWGG | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 2 cut(s) | 186, 363 |
| PspPI | GGNCC | 2 cut(s) | 25, 514 |
| PsuI | RGATCY | 1 cut(s) | 62 |
| PsyI | GACNNNGTC | 1 cut(s) | 380 |
| RseI | CAYNNNNRTG | 1 cut(s) | 276 |
| SaqAI | TTAA | 1 cut(s) | 332 |
| SatI | GCNGC | 1 cut(s) | 147 |
| Sau3AI | GATC | 4 cut(s) | 62, 73, 156, 280 |
| Sau96I | GGNCC | 2 cut(s) | 25, 514 |
| SchI | GAGTC | 1 cut(s) | 205 |
| ScrFI | CCNGG | 1 cut(s) | 69 |
| SfaNI | GCATC | 3 cut(s) | 98, 102, 471 |
| SinI | GGWCC | 1 cut(s) | 25 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 276 |
| Sse9I | AATT | 4 cut(s) | 49, 210, 405, 546 |
| SspMI | CTAG | 2 cut(s) | 215, 314 |
| StyD4I | CCNGG | 1 cut(s) | 67 |
| TaiI | ACGT | 2 cut(s) | 37, 564 |
| TaqI | TCGA | 1 cut(s) | 246 |
| TasI | AATT | 4 cut(s) | 49, 210, 405, 546 |
| TfiI | GAWTC | 1 cut(s) | 434 |
| Tru1I | TTAA | 1 cut(s) | 332 |
| Tru9I | TTAA | 1 cut(s) | 332 |
| TscAI | CASTG | 1 cut(s) | 166 |
| TseI | GCWGC | 1 cut(s) | 146 |
| TspRI | CASTG | 1 cut(s) | 166 |
| Tth111I | GACNNNGTC | 1 cut(s) | 380 |
| VpaK11BI | GGWCC | 1 cut(s) | 25 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 383 |
| XapI | RAATTY | 1 cut(s) | 210 |
| XceI | RCATGY | 1 cut(s) | 11 |
| XspI | CTAG | 2 cut(s) | 215, 314 |