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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 67 |
| AccIII | TCCGGA | 1 cut(s) | 88 |
| AciI | CCGC | 4 cut(s) | 107, 170, 382, 542 |
| AclWI | GGATC | 2 cut(s) | 267, 523 |
| AcoI | YGGCCR | 1 cut(s) | 349 |
| AcuI | CTGAAG | 1 cut(s) | 608 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 88, 627 |
| AgsI | TTSAA | 4 cut(s) | 31, 182, 687, 708 |
| AjnI | CCWGG | 3 cut(s) | 225, 385, 471 |
| AluBI | AGCT | 6 cut(s) | 78, 234, 298, 332, 580, 592 |
| AluI | AGCT | 6 cut(s) | 78, 234, 298, 332, 580, 592 |
| Alw26I | GTCTC | 3 cut(s) | 90, 164, 305 |
| AlwI | GGATC | 2 cut(s) | 267, 523 |
| Ama87I | CYCGRG | 1 cut(s) | 555 |
| Aor13HI | TCCGGA | 1 cut(s) | 88 |
| AoxI | GGCC | 2 cut(s) | 349, 383 |
| ApeKI | GCWGC | 1 cut(s) | 167 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 8, 77 |
| AspS9I | GGNCC | 1 cut(s) | 200 |
| AsuC2I | CCSGG | 2 cut(s) | 198, 255 |
| AsuHPI | GGTGA | 3 cut(s) | 243, 670, 709 |
| AvaI | CYCGRG | 1 cut(s) | 555 |
| AvaII | GGWCC | 1 cut(s) | 200 |
| BalI | TGGCCA | 1 cut(s) | 351 |
| BanI | GGYRCC | 1 cut(s) | 67 |
| BanII | GRGCYC | 1 cut(s) | 55 |
| BbvI | GCAGC | 1 cut(s) | 154 |
| BccI | CCATC | 2 cut(s) | 211, 712 |
| BciT130I | CCWGG | 3 cut(s) | 227, 387, 473 |
| BcnI | CCSGG | 2 cut(s) | 198, 255 |
| BcoDI | GTCTC | 3 cut(s) | 90, 164, 305 |
| BfaI | CTAG | 4 cut(s) | 39, 48, 302, 426 |
| BfmI | CTRYAG | 1 cut(s) | 666 |
| BisI | GCNGC | 3 cut(s) | 108, 168, 383 |
| BlsI | GCNGC | 3 cut(s) | 109, 169, 384 |
| Bme1390I | CCNGG | 5 cut(s) | 198, 227, 255, 387, 473 |
| Bme18I | GGWCC | 1 cut(s) | 200 |
| BmeT110I | CYCGRG | 1 cut(s) | 555 |
| BmgT120I | GGNCC | 1 cut(s) | 200 |
| BmiI | GGNNCC | 3 cut(s) | 69, 201, 213 |
| BmrFI | CCNGG | 5 cut(s) | 198, 227, 255, 387, 473 |
| BmsI | GCATC | 2 cut(s) | 124, 541 |
| BpuEI | CTTGAG | 3 cut(s) | 146, 617, 630 |
| BpuMI | CCSGG | 2 cut(s) | 198, 255 |
| BsaI | GGTCTC | 1 cut(s) | 164 |
| BsaJI | CCNNGG | 2 cut(s) | 254, 510 |
| BsaWI | WCCGGW | 1 cut(s) | 88 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 390, 420 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 88, 627 |
| Bse1I | ACTGG | 2 cut(s) | 64, 405 |
| BseAI | TCCGGA | 1 cut(s) | 88 |
| BseBI | CCWGG | 3 cut(s) | 227, 387, 473 |
| BseDI | CCNNGG | 2 cut(s) | 254, 510 |
| BseGI | GGATG | 3 cut(s) | 469, 505, 556 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 88, 627 |
| BseMII | CTCAG | 2 cut(s) | 308, 470 |
| BseNI | ACTGG | 2 cut(s) | 64, 405 |
| BseRI | GAGGAG | 3 cut(s) | 614, 617, 620 |
| BseXI | GCAGC | 1 cut(s) | 154 |
| BshFI | GGCC | 2 cut(s) | 351, 385 |
| BshNI | GGYRCC | 1 cut(s) | 67 |
| BsiHKCI | CYCGRG | 1 cut(s) | 555 |
| BsiSI | CCGG | 3 cut(s) | 89, 197, 254 |
| BslFI | GGGAC | 1 cut(s) | 213 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 88, 627 |
| BsmAI | GTCTC | 3 cut(s) | 90, 164, 305 |
| BsmFI | GGGAC | 1 cut(s) | 213 |
| BsmI | GAATGC | 1 cut(s) | 10 |
| BsnI | GGCC | 2 cut(s) | 351, 385 |
| Bso31I | GGTCTC | 1 cut(s) | 164 |
| BsoBI | CYCGRG | 1 cut(s) | 555 |
| Bsp1286I | GDGCHC | 1 cut(s) | 55 |
| Bsp13I | TCCGGA | 1 cut(s) | 88 |
| Bsp143I | GATC | 5 cut(s) | 248, 259, 367, 466, 515 |
| BspACI | CCGC | 4 cut(s) | 107, 170, 382, 542 |
| BspANI | GGCC | 2 cut(s) | 351, 385 |
| BspCNI | CTCAG | 2 cut(s) | 307, 469 |
| BspEI | TCCGGA | 1 cut(s) | 88 |
| BspLI | GGNNCC | 3 cut(s) | 69, 201, 213 |
| BspPI | GGATC | 2 cut(s) | 267, 523 |
| BspT107I | GGYRCC | 1 cut(s) | 67 |
| BspTNI | GGTCTC | 1 cut(s) | 164 |
| BsrI | ACTGG | 2 cut(s) | 64, 405 |
| BssECI | CCNNGG | 2 cut(s) | 254, 510 |
| BssMI | GATC | 5 cut(s) | 248, 259, 367, 466, 515 |
| BssT1I | CCWWGG | 1 cut(s) | 510 |
| Bst2UI | CCWGG | 3 cut(s) | 227, 387, 473 |
| Bst4CI | ACNGT | 1 cut(s) | 670 |
| Bst6I | CTCTTC | 2 cut(s) | 32, 687 |
| BstC8I | GCNNGC | 1 cut(s) | 277 |
| BstDEI | CTNAG | 2 cut(s) | 294, 456 |
| BstF5I | GGATG | 3 cut(s) | 469, 505, 556 |
| BstKTI | GATC | 5 cut(s) | 251, 262, 370, 469, 518 |
| BstMAI | GTCTC | 3 cut(s) | 90, 164, 305 |
| BstMBI | GATC | 5 cut(s) | 248, 259, 367, 466, 515 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 104, 231 |
| BstNI | CCWGG | 3 cut(s) | 227, 387, 473 |
| BstNSI | RCATGY | 1 cut(s) | 279 |
| BstSCI | CCNGG | 5 cut(s) | 196, 225, 253, 385, 471 |
| BstSFI | CTRYAG | 1 cut(s) | 666 |
| BstV1I | GCAGC | 1 cut(s) | 154 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 359 |
| BsuRI | GGCC | 2 cut(s) | 351, 385 |
| BtsCI | GGATG | 3 cut(s) | 469, 505, 556 |
| Cac8I | GCNNGC | 1 cut(s) | 277 |
| Cfr13I | GGNCC | 1 cut(s) | 200 |
| CviAII | CATG | 1 cut(s) | 276 |
| DdeI | CTNAG | 2 cut(s) | 294, 456 |
| DpnI | GATC | 5 cut(s) | 250, 261, 369, 468, 517 |
| DpnII | GATC | 5 cut(s) | 248, 259, 367, 466, 515 |
| EaeI | YGGCCR | 1 cut(s) | 349 |
| Eam1104I | CTCTTC | 2 cut(s) | 32, 687 |
| EarI | CTCTTC | 2 cut(s) | 32, 687 |
| Eco130I | CCWWGG | 1 cut(s) | 510 |
| Eco24I | GRGCYC | 1 cut(s) | 55 |
| Eco31I | GGTCTC | 1 cut(s) | 164 |
| Eco47I | GGWCC | 1 cut(s) | 200 |
| Eco57I | CTGAAG | 1 cut(s) | 608 |
| Eco88I | CYCGRG | 1 cut(s) | 555 |
| EcoRII | CCWGG | 3 cut(s) | 225, 385, 471 |
| EcoT14I | CCWWGG | 1 cut(s) | 510 |
| EcoT38I | GRGCYC | 1 cut(s) | 55 |
| ErhI | CCWWGG | 1 cut(s) | 510 |
| FaeI | CATG | 1 cut(s) | 279 |
| FaiI | YATR | 4 cut(s) | 65, 239, 277, 422 |
| FaqI | GGGAC | 1 cut(s) | 213 |
| FatI | CATG | 1 cut(s) | 275 |
| FauI | CCCGC | 1 cut(s) | 163 |
| Fnu4HI | GCNGC | 3 cut(s) | 108, 168, 383 |
| FokI | GGATG | 3 cut(s) | 476, 492, 563 |
| FriOI | GRGCYC | 1 cut(s) | 55 |
| Fsp4HI | GCNGC | 3 cut(s) | 108, 168, 383 |
| FspBI | CTAG | 4 cut(s) | 39, 48, 302, 426 |
| GluI | GCNGC | 3 cut(s) | 108, 168, 383 |
| HaeIII | GGCC | 2 cut(s) | 351, 385 |
| HapII | CCGG | 3 cut(s) | 89, 197, 254 |
| Hin1II | CATG | 1 cut(s) | 279 |
| HindIII | AAGCTT | 4 cut(s) | 76, 330, 578, 590 |
| HinfI | GANTC | 5 cut(s) | 436, 448, 558, 617, 683 |
| HpaII | CCGG | 3 cut(s) | 89, 197, 254 |
| HphI | GGTGA | 3 cut(s) | 243, 670, 709 |
| Hpy188I | TCNGA | 3 cut(s) | 142, 459, 588 |
| Hpy188III | TCNNGA | 2 cut(s) | 89, 596 |
| HpyAV | CCTTC | 6 cut(s) | 420, 454, 490, 541, 625, 725 |
| HpyCH4III | ACNGT | 1 cut(s) | 670 |
| HpyCH4IV | ACGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 1 cut(s) | 279 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 104, 231 |
| HpyF3I | CTNAG | 2 cut(s) | 294, 456 |
| HpySE526I | ACGT | 1 cut(s) | 103 |
| Hsp92II | CATG | 1 cut(s) | 279 |
| Kpn2I | TCCGGA | 1 cut(s) | 88 |
| Kzo9I | GATC | 5 cut(s) | 248, 259, 367, 466, 515 |
| Lsp1109I | GCAGC | 1 cut(s) | 154 |
| LweI | GCATC | 2 cut(s) | 124, 541 |
| MaeI | CTAG | 4 cut(s) | 39, 48, 302, 426 |
| MaeII | ACGT | 1 cut(s) | 103 |
| MalI | GATC | 5 cut(s) | 250, 261, 369, 468, 517 |
| MboI | GATC | 5 cut(s) | 248, 259, 367, 466, 515 |
| MboII | GAAGA | 4 cut(s) | 19, 127, 505, 704 |
| MfeI | CAATTG | 1 cut(s) | 708 |
| MhlI | GDGCHC | 1 cut(s) | 55 |
| MlsI | TGGCCA | 1 cut(s) | 351 |
| MluCI | AATT | 4 cut(s) | 31, 151, 395, 708 |
| MluNI | TGGCCA | 1 cut(s) | 351 |
| MlyI | GAGTC | 2 cut(s) | 442, 567 |
| Mox20I | TGGCCA | 1 cut(s) | 351 |
| MroI | TCCGGA | 1 cut(s) | 88 |
| MroXI | GAANNNNTTC | 2 cut(s) | 8, 77 |
| MscI | TGGCCA | 1 cut(s) | 351 |
| MseI | TTAA | 3 cut(s) | 192, 243, 531 |
| Msp20I | TGGCCA | 1 cut(s) | 351 |
| MspI | CCGG | 3 cut(s) | 89, 197, 254 |
| MspR9I | CCNGG | 5 cut(s) | 198, 227, 255, 387, 473 |
| MunI | CAATTG | 1 cut(s) | 708 |
| Mva1269I | GAATGC | 1 cut(s) | 10 |
| MvaI | CCWGG | 3 cut(s) | 227, 387, 473 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 104, 231 |
| NciI | CCSGG | 2 cut(s) | 198, 255 |
| NdeII | GATC | 5 cut(s) | 248, 259, 367, 466, 515 |
| NlaIII | CATG | 1 cut(s) | 279 |
| NlaIV | GGNNCC | 3 cut(s) | 69, 201, 213 |
| NspI | RCATGY | 1 cut(s) | 279 |
| PaeI | GCATGC | 1 cut(s) | 279 |
| PaeR7I | CTCGAG | 1 cut(s) | 555 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 212 |
| PctI | GAATGC | 1 cut(s) | 10 |
| PdmI | GAANNNNTTC | 2 cut(s) | 8, 77 |
| PfeI | GAWTC | 3 cut(s) | 436, 617, 683 |
| PkrI | GCNGC | 3 cut(s) | 109, 169, 384 |
| PleI | GAGTC | 2 cut(s) | 442, 566 |
| PpsI | GAGTC | 2 cut(s) | 442, 566 |
| Psp6I | CCWGG | 3 cut(s) | 225, 385, 471 |
| PspGI | CCWGG | 3 cut(s) | 225, 385, 471 |
| PspN4I | GGNNCC | 3 cut(s) | 69, 201, 213 |
| PspPI | GGNCC | 1 cut(s) | 200 |
| PspXI | VCTCGAGB | 1 cut(s) | 555 |
| SaqAI | TTAA | 3 cut(s) | 192, 243, 531 |
| SatI | GCNGC | 3 cut(s) | 108, 168, 383 |
| Sau3AI | GATC | 5 cut(s) | 248, 259, 367, 466, 515 |
| Sau96I | GGNCC | 1 cut(s) | 200 |
| SchI | GAGTC | 2 cut(s) | 442, 567 |
| ScrFI | CCNGG | 5 cut(s) | 198, 227, 255, 387, 473 |
| SduI | GDGCHC | 1 cut(s) | 55 |
| SfaNI | GCATC | 2 cut(s) | 124, 541 |
| SfcI | CTRYAG | 1 cut(s) | 666 |
| Sfr274I | CTCGAG | 1 cut(s) | 555 |
| SinI | GGWCC | 1 cut(s) | 200 |
| SlaI | CTCGAG | 1 cut(s) | 555 |
| SmlI | CTYRAG | 4 cut(s) | 161, 555, 596, 645 |
| SmoI | CTYRAG | 4 cut(s) | 161, 555, 596, 645 |
| SphI | GCATGC | 1 cut(s) | 279 |
| Sse9I | AATT | 4 cut(s) | 31, 151, 395, 708 |
| SsiI | CCGC | 4 cut(s) | 107, 170, 382, 542 |
| SspMI | CTAG | 4 cut(s) | 39, 48, 302, 426 |
| StyD4I | CCNGG | 5 cut(s) | 196, 225, 253, 385, 471 |
| StyI | CCWWGG | 1 cut(s) | 510 |
| TaaI | ACNGT | 1 cut(s) | 670 |
| TaiI | ACGT | 1 cut(s) | 106 |
| TaqI | TCGA | 2 cut(s) | 55, 556 |
| TasI | AATT | 4 cut(s) | 31, 151, 395, 708 |
| TauI | GCSGC | 2 cut(s) | 110, 385 |
| TfiI | GAWTC | 3 cut(s) | 436, 617, 683 |
| Tru1I | TTAA | 3 cut(s) | 192, 243, 531 |
| Tru9I | TTAA | 3 cut(s) | 192, 243, 531 |
| TseI | GCWGC | 1 cut(s) | 167 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 1 cut(s) | 200 |
| XceI | RCATGY | 1 cut(s) | 279 |
| XhoI | CTCGAG | 1 cut(s) | 555 |
| XmnI | GAANNNNTTC | 2 cut(s) | 8, 77 |
| XspI | CTAG | 4 cut(s) | 39, 48, 302, 426 |