Rmu_sc0001519.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001519.1
OG0000049
Physical Location & Seq
Reverse (-)
48007 .. 49470
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001519.1_g000009.1.cds

Sequence Viewer

Length: 1464 bp
atggctgacatccgttttgagactgaggaggtagggctacagatggactcgagccttgtggtgttgggggctgccggggctgcagcgtttcaagatgggaactggtgcatggtgggccgtttgttggcgccgaaagcaaggctgcccggctttaagggaactattgccacgatctggaacatcagatcaggattgaccattcaggacgcaggggagcgatttgtgttccaatttgagacagaagctgtgcgcaaccggatcttgcgtggaggtccctggttttatcggaatactatgctagtggtgggagaatatgatggtctcagtcctgtggaggaggtgcctctaaatcttttggaggcctgggtggttgtgaagggacttccttttgccctgaggaacaagacggcgctggctatggtgggtgcctctttggggaatatgaagagagtggatcaaaatgctttgaagaggaaagaagaagaacagcgcatcaaggtggtttttgacgttcggcgccggatccgggtttggaaggtgtttgagttctcaccggtggtgaaaccggagttaacttttatcttcgagaaggttaagggtttttgccgggactgtggggtttttgttcatgatgcaactggttgtgataagctcttaatacgtgagaaggaggacattcaagctgggtcgacggcaggagccatggccgggttatcgttgacatcggggctagagactggttctttcgtgagggacaagtctctgagtttgagcaacgtcgatctggaagttgggtcggggtctgtcggacaaggggctgtggtggtagctggtgagaagggcgaccacgtaaagtcgaaatctgtcgagtttatgccttccatattgtctggaatacccagggttttagaaccagtgatccacaccatggggaacttgaagctgagagttccaatgctggttgctccactggagatcgactcgcagtccgcgaccttgttccctaagttatctgcgacaggtaatgagggctcaagaatggagttttcctccatgcagttggtcccgacagggagaaagagaaaggctgcattgtctgtggatcgtcttagaaagaagtacttaactttcccagagtcgaagctggaggttgaggagagtgtccctttgattgtccaacacaagaatggcaaggtctcaccaaagaaaaagaaaggtggacgtcctaagggaagcaaaaataagattaagaatgcagatgaacaagaagtgaagaagatacgtaagtacaagcgtagagggaaaattttgaattttgattcatcacgtgaaacattggatccttccactgtggaagagctggggactatgcaaataggggaagaggaggttgtgaaggaactccctgttctggagggcagcatggaaggtgctgtgtccccttctaggactaatttaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

487

Amino Acids

53.63

Weight (kDa)

9.45

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1225
Acc16I TGCGCA 1 cut(s) 251
AccB1I GGYRCC 4 cut(s) 127, 340, 425, 516
AccB7I CCANNNNNTGG 2 cut(s) 174, 928
AccI GTMKAC 1 cut(s) 689
AccII CGCG 1 cut(s) 992
AciI CCGC 1 cut(s) 990
AclWI GGATC 8 cut(s) 266, 462, 517, 530, 913, 1110, 1334, 1347
AcoI YGGCCR 1 cut(s) 705
AcsI RAATTY 2 cut(s) 1305, 1312
AcvI CACGTG 1 cut(s) 1328
AcyI GRCGYC 3 cut(s) 128, 517, 1222
AfaI GTAC 2 cut(s) 1121, 1289
AfiI CCNNNNNNNGG 8 cut(s) 124, 174, 435, 526, 708, 928, 1411, 1446
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 5 cut(s) 92, 469, 680, 940, 1312
AhdI GACNNNNNGTC 1 cut(s) 985
AjnI CCWGG 3 cut(s) 275, 362, 899
AloI GAACNNNNNNTCC 2 cut(s) 903, 935
AluBI AGCT 7 cut(s) 245, 652, 683, 830, 943, 1144, 1360
AluI AGCT 7 cut(s) 245, 652, 683, 830, 943, 1144, 1360
Alw26I GTCTC 6 cut(s) 14, 230, 326, 728, 765, 1201
AlwI GGATC 8 cut(s) 266, 462, 517, 530, 913, 1110, 1334, 1347
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 3 cut(s) 115, 360, 705
ApeKI GCWGC 6 cut(s) 71, 80, 83, 142, 1088, 1419
ApoI RAATTY 2 cut(s) 1305, 1312
ArsI GACNNNNNNTTYG 1 cut(s) 31
AsiGI ACCGGT 1 cut(s) 553
AspLEI GCGC 5 cut(s) 130, 252, 412, 492, 519
AspS9I GGNCC 3 cut(s) 115, 272, 1063
AsuC2I CCSGG 5 cut(s) 76, 147, 527, 608, 709
AsuHPI GGTGA 4 cut(s) 543, 571, 845, 1191
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 2 cut(s) 272, 1063
AxyI CCTNAGG 2 cut(s) 395, 1227
BaeI ACNNNNGTAYC 2 cut(s) 1271, 1304
BamHI GGATCC 2 cut(s) 522, 1339
BanI GGYRCC 4 cut(s) 127, 340, 425, 516
BanII GRGCYC 1 cut(s) 1034
BbrPI CACGTG 1 cut(s) 1328
BbvI GCAGC 6 cut(s) 58, 67, 95, 129, 1075, 1431
BccI CCATC 3 cut(s) 37, 89, 311
BceAI ACGGC 3 cut(s) 102, 423, 708
BciT130I CCWGG 3 cut(s) 277, 364, 901
BcnI CCSGG 5 cut(s) 76, 147, 527, 608, 709
BcoDI GTCTC 6 cut(s) 14, 230, 326, 728, 765, 1201
BfaI CTAG 3 cut(s) 299, 731, 1446
BfmI CTRYAG 2 cut(s) 38, 81
BfoI RGCGCY 3 cut(s) 131, 413, 520
BisI GCNGC 6 cut(s) 72, 81, 84, 143, 1089, 1420
BlsI GCNGC 6 cut(s) 73, 82, 85, 144, 1090, 1421
BmcAI AGTACT 1 cut(s) 1121
Bme1390I CCNGG 8 cut(s) 76, 147, 277, 364, 527, 608, 709, 901
Bme18I GGWCC 2 cut(s) 272, 1063
BmeRI GACNNNNNGTC 1 cut(s) 985
BmeT110I CYCGRG 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 115, 272, 1063
BmiI GGNNCC 9 cut(s) 129, 274, 342, 427, 518, 524, 700, 1065, 1341
BmrFI CCNGG 8 cut(s) 76, 147, 277, 364, 527, 608, 709, 901
BmsI GCATC 2 cut(s) 501, 622
BplI GAGNNNNNCTC 4 cut(s) 965, 997, 1034, 1066
BpmI CTGGAG 3 cut(s) 992, 1166, 1433
BpuEI CTTGAG 1 cut(s) 1018
BpuMI CCSGG 5 cut(s) 76, 147, 527, 608, 709
BsaAI YACGTR 4 cut(s) 662, 850, 1283, 1328
BsaHI GRCGYC 3 cut(s) 128, 517, 1222
BsaI GGTCTC 2 cut(s) 326, 1201
BsaJI CCNNGG 7 cut(s) 75, 275, 363, 702, 899, 900, 927
BsaWI WCCGGW 3 cut(s) 255, 553, 565
Bsc4I CCNNNNNNNGG 8 cut(s) 124, 174, 435, 526, 708, 928, 1411, 1446
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 5 cut(s) 107, 643, 742, 914, 975
Bse21I CCTNAGG 2 cut(s) 395, 1227
BseBI CCWGG 3 cut(s) 277, 364, 901
BseDI CCNNGG 7 cut(s) 75, 275, 363, 702, 899, 900, 927
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 8 cut(s) 124, 174, 435, 526, 708, 928, 1411, 1446
BseMII CTCAG 5 cut(s) 15, 337, 386, 755, 935
BseNI ACTGG 5 cut(s) 107, 643, 742, 914, 975
BseRI GAGGAG 4 cut(s) 41, 350, 1169, 1400
BseXI GCAGC 6 cut(s) 58, 67, 95, 129, 1075, 1431
BseYI CCCAGC 2 cut(s) 683, 1360
Bsh1236I CGCG 1 cut(s) 992
BshFI GGCC 3 cut(s) 117, 362, 707
BshNI GGYRCC 4 cut(s) 127, 340, 425, 516
BshTI ACCGGT 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 9 cut(s) 75, 147, 256, 520, 526, 554, 566, 607, 708
BslFI GGGAC 8 cut(s) 258, 393, 623, 767, 1049, 1148, 1378, 1423
BslI CCNNNNNNNGG 8 cut(s) 124, 174, 435, 526, 708, 928, 1411, 1446
BsmAI GTCTC 6 cut(s) 14, 230, 326, 728, 765, 1201
BsmFI GGGAC 8 cut(s) 258, 393, 623, 767, 1049, 1148, 1378, 1423
BsmI GAATGC 1 cut(s) 1258
BsnI GGCC 3 cut(s) 117, 362, 707
Bso31I GGTCTC 2 cut(s) 326, 1201
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 1034
Bsp19I CCATGG 2 cut(s) 702, 927
BspACI CCGC 1 cut(s) 990
BspANI GGCC 3 cut(s) 117, 362, 707
BspCNI CTCAG 5 cut(s) 16, 336, 387, 756, 936
BspFNI CGCG 1 cut(s) 992
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 9 cut(s) 129, 274, 342, 427, 518, 524, 700, 1065, 1341
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 8 cut(s) 266, 462, 517, 530, 913, 1110, 1334, 1347
BspQI GCTCTTC 1 cut(s) 1350
BspT107I GGYRCC 4 cut(s) 127, 340, 425, 516
BspTNI GGTCTC 2 cut(s) 326, 1201
BsrFI RCCGGY 1 cut(s) 553
BsrI ACTGG 5 cut(s) 107, 643, 742, 914, 975
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 7 cut(s) 75, 275, 363, 702, 899, 900, 927
BssNI GRCGYC 3 cut(s) 128, 517, 1222
BssT1I CCWWGG 2 cut(s) 702, 927
Bst2UI CCWGG 3 cut(s) 277, 364, 901
Bst4CI ACNGT 2 cut(s) 614, 1351
Bst6I CTCTTC 4 cut(s) 440, 464, 1350, 1377
BstACI GRCGYC 3 cut(s) 128, 517, 1222
BstBAI YACGTR 4 cut(s) 662, 850, 1283, 1328
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 8 cut(s) 24, 323, 395, 764, 944, 1005, 1109, 1227
BstDSI CCRYGG 2 cut(s) 702, 927
BstF5I GGATG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 992
BstH2I RGCGCY 3 cut(s) 131, 413, 520
BstHHI GCGC 5 cut(s) 130, 252, 412, 492, 519
BstMAI GTCTC 6 cut(s) 14, 230, 326, 728, 765, 1201
BstMWI GCNNNNNNNGC 4 cut(s) 77, 80, 114, 134
BstNI CCWGG 3 cut(s) 277, 364, 901
BstSCI CCNGG 8 cut(s) 74, 145, 275, 362, 525, 606, 707, 899
BstSFI CTRYAG 2 cut(s) 38, 81
BstSNI TACGTA 1 cut(s) 1283
BstUI CGCG 1 cut(s) 992
BstV1I GCAGC 6 cut(s) 58, 67, 95, 129, 1075, 1431
BstX2I RGATCY 3 cut(s) 258, 522, 1339
BstXI CCANNNNNNTGG 1 cut(s) 1060
BstYI RGATCY 3 cut(s) 258, 522, 1339
Bsu36I CCTNAGG 2 cut(s) 395, 1227
BsuRI GGCC 3 cut(s) 117, 362, 707
BtgI CCRYGG 2 cut(s) 702, 927
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 3 cut(s) 921, 968, 1347
Cac8I GCNNGC 1 cut(s) 414
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 628
CfoI GCGC 5 cut(s) 130, 252, 412, 492, 519
Cfr10I RCCGGY 1 cut(s) 553
Cfr13I GGNCC 3 cut(s) 115, 272, 1063
CseI GACGC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 1120, 1288
CspAI ACCGGT 1 cut(s) 553
CviAII CATG 6 cut(s) 109, 629, 703, 928, 1054, 1423
CviQI GTAC 2 cut(s) 1120, 1288
DdeI CTNAG 8 cut(s) 24, 323, 395, 764, 944, 1005, 1109, 1227
DinI GGCGCC 2 cut(s) 129, 518
DriI GACNNNNNGTC 1 cut(s) 985
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 4 cut(s) 440, 464, 1350, 1377
Eam1105I GACNNNNNGTC 1 cut(s) 985
EarI CTCTTC 4 cut(s) 440, 464, 1350, 1377
Eco105I TACGTA 1 cut(s) 1283
Eco130I CCWWGG 2 cut(s) 702, 927
Eco147I AGGCCT 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 1034
Eco31I GGTCTC 2 cut(s) 326, 1201
Eco47I GGWCC 2 cut(s) 272, 1063
Eco72I CACGTG 1 cut(s) 1328
Eco81I CCTNAGG 2 cut(s) 395, 1227
Eco88I CYCGRG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 3 cut(s) 275, 362, 899
EcoT14I CCWWGG 2 cut(s) 702, 927
EcoT38I GRGCYC 1 cut(s) 1034
EgeI GGCGCC 2 cut(s) 129, 518
EheI GGCGCC 2 cut(s) 129, 518
ErhI CCWWGG 2 cut(s) 702, 927
FaeI CATG 6 cut(s) 112, 632, 706, 931, 1057, 1426
FalI AAGNNNNNCTT 2 cut(s) 1106, 1138
FaqI GGGAC 8 cut(s) 258, 393, 623, 767, 1049, 1148, 1378, 1423
FatI CATG 6 cut(s) 108, 628, 702, 927, 1053, 1422
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 6 cut(s) 72, 81, 84, 143, 1089, 1420
FriOI GRGCYC 1 cut(s) 1034
Fsp4HI GCNGC 6 cut(s) 72, 81, 84, 143, 1089, 1420
FspBI CTAG 3 cut(s) 299, 731, 1446
FspI TGCGCA 1 cut(s) 251
GlaI GCGC 5 cut(s) 129, 251, 411, 491, 518
GluI GCNGC 6 cut(s) 72, 81, 84, 143, 1089, 1420
GsaI CCCAGC 2 cut(s) 687, 1364
GsuI CTGGAG 3 cut(s) 992, 1166, 1433
HaeII RGCGCY 3 cut(s) 131, 413, 520
HaeIII GGCC 3 cut(s) 117, 362, 707
HapII CCGG 9 cut(s) 75, 147, 256, 520, 526, 554, 566, 607, 708
HgaI GACGC 1 cut(s) 215
HhaI GCGC 5 cut(s) 130, 252, 412, 492, 519
Hin1I GRCGYC 3 cut(s) 128, 517, 1222
Hin1II CATG 6 cut(s) 112, 632, 706, 931, 1057, 1426
Hin6I GCGC 5 cut(s) 128, 250, 410, 490, 517
HinP1I GCGC 5 cut(s) 128, 250, 410, 490, 517
HincII GTYRAC 3 cut(s) 573, 690, 720
HindII GTYRAC 3 cut(s) 573, 690, 720
HinfI GANTC 4 cut(s) 47, 980, 1136, 1319
HpaI GTTAAC 1 cut(s) 573
HpaII CCGG 9 cut(s) 75, 147, 256, 520, 526, 554, 566, 607, 708
HphI GGTGA 4 cut(s) 543, 571, 845, 1191
Hpy166II GTNNAC 4 cut(s) 573, 690, 720, 1220
Hpy188I TCNGA 4 cut(s) 185, 288, 765, 809
Hpy8I GTNNAC 4 cut(s) 573, 690, 720, 1220
Hpy99I CGWCG 2 cut(s) 694, 782
HpyCH4III ACNGT 2 cut(s) 614, 1351
HpyCH4IV ACGT 7 cut(s) 510, 661, 777, 849, 1222, 1282, 1327
HpyCH4V TGCA 7 cut(s) 83, 108, 635, 1057, 1091, 1256, 1372
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 80, 114, 134
HpyF3I CTNAG 8 cut(s) 24, 323, 395, 764, 944, 1005, 1109, 1227
HpySE526I ACGT 7 cut(s) 510, 661, 777, 849, 1222, 1282, 1327
Hsp92I GRCGYC 3 cut(s) 128, 517, 1222
Hsp92II CATG 6 cut(s) 112, 632, 706, 931, 1057, 1426
HspAI GCGC 5 cut(s) 128, 250, 410, 490, 517
KasI GGCGCC 2 cut(s) 127, 516
KspAI GTTAAC 1 cut(s) 573
LguI GCTCTTC 1 cut(s) 1350
LmnI GCTCC 3 cut(s) 214, 698, 970
Lsp1109I GCAGC 6 cut(s) 58, 67, 95, 129, 1075, 1431
LweI GCATC 2 cut(s) 501, 622
MaeI CTAG 3 cut(s) 299, 731, 1446
MaeII ACGT 7 cut(s) 510, 661, 777, 849, 1222, 1282, 1327
MboII GAAGA 9 cut(s) 457, 481, 491, 494, 574, 1285, 1288, 1367, 1394
MflI RGATCY 3 cut(s) 258, 522, 1339
MhlI GDGCHC 1 cut(s) 1034
MluCI AATT 5 cut(s) 230, 1305, 1312, 1453, 1458
Mly113I GGCGCC 2 cut(s) 128, 517
MlyI GAGTC 3 cut(s) 41, 974, 1145
MmeI TCCRAC 2 cut(s) 787, 1201
MseI TTAA 8 cut(s) 153, 572, 594, 656, 1124, 1248, 1457, 1462
MslI CAYNNNNRTG 2 cut(s) 497, 1185
MspI CCGG 9 cut(s) 75, 147, 256, 520, 526, 554, 566, 607, 708
MspR9I CCNGG 8 cut(s) 76, 147, 277, 364, 527, 608, 709, 901
Mva1269I GAATGC 1 cut(s) 1258
MvaI CCWGG 3 cut(s) 277, 364, 901
MvnI CGCG 1 cut(s) 992
MwoI GCNNNNNNNGC 4 cut(s) 77, 80, 114, 134
NarI GGCGCC 2 cut(s) 128, 517
NciI CCSGG 5 cut(s) 76, 147, 527, 608, 709
NcoI CCATGG 2 cut(s) 702, 927
NlaIII CATG 6 cut(s) 112, 632, 706, 931, 1057, 1426
NlaIV GGNNCC 9 cut(s) 129, 274, 342, 427, 518, 524, 700, 1065, 1341
NsbI TGCGCA 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 49
PagI TCATGA 1 cut(s) 628
PasI CCCWGGG 1 cut(s) 900
PceI AGGCCT 1 cut(s) 362
PciSI GCTCTTC 1 cut(s) 1350
PcsI WCGNNNNNNNCGW 1 cut(s) 989
PctI GAATGC 1 cut(s) 1258
PfeI GAWTC 1 cut(s) 1319
PflMI CCANNNNNTGG 2 cut(s) 174, 928
PinAI ACCGGT 1 cut(s) 553
PkrI GCNGC 6 cut(s) 73, 82, 85, 144, 1090, 1421
PleI GAGTC 3 cut(s) 41, 974, 1144
PluTI GGCGCC 2 cut(s) 131, 520
PmaCI CACGTG 1 cut(s) 1328
PmlI CACGTG 1 cut(s) 1328
PpsI GAGTC 3 cut(s) 41, 974, 1144
Ppu21I YACGTR 4 cut(s) 662, 850, 1283, 1328
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 3 cut(s) 275, 362, 899
PspCI CACGTG 1 cut(s) 1328
PspFI CCCAGC 2 cut(s) 683, 1360
PspGI CCWGG 3 cut(s) 275, 362, 899
PspN4I GGNNCC 9 cut(s) 129, 274, 342, 427, 518, 524, 700, 1065, 1341
PspPI GGNCC 3 cut(s) 115, 272, 1063
PspPPI RGGWCCY 1 cut(s) 272
PspXI VCTCGAGB 1 cut(s) 49
PstI CTGCAG 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 3 cut(s) 258, 522, 1339
RsaI GTAC 2 cut(s) 1121, 1289
RsaNI GTAC 2 cut(s) 1120, 1288
RseI CAYNNNNRTG 2 cut(s) 497, 1185
SalI GTCGAC 1 cut(s) 688
SapI GCTCTTC 1 cut(s) 1350
SaqAI TTAA 8 cut(s) 153, 572, 594, 656, 1124, 1248, 1457, 1462
SatI GCNGC 6 cut(s) 72, 81, 84, 143, 1089, 1420
Sau96I GGNCC 3 cut(s) 115, 272, 1063
ScaI AGTACT 1 cut(s) 1121
SchI GAGTC 3 cut(s) 41, 974, 1145
ScrFI CCNGG 8 cut(s) 76, 147, 277, 364, 527, 608, 709, 901
SduI GDGCHC 1 cut(s) 1034
SfaNI GCATC 2 cut(s) 501, 622
SfcI CTRYAG 2 cut(s) 38, 81
SfoI GGCGCC 2 cut(s) 129, 518
Sfr274I CTCGAG 1 cut(s) 49
SgrAI CRCCGGYG 1 cut(s) 553
SinI GGWCC 2 cut(s) 272, 1063
SlaI CTCGAG 1 cut(s) 49
SmiMI CAYNNNNRTG 2 cut(s) 497, 1185
SmlI CTYRAG 2 cut(s) 49, 1033
SmoI CTYRAG 2 cut(s) 49, 1033
SnaBI TACGTA 1 cut(s) 1283
Sse9I AATT 5 cut(s) 230, 1305, 1312, 1453, 1458
SseBI AGGCCT 1 cut(s) 362
SsiI CCGC 1 cut(s) 990
SspDI GGCGCC 2 cut(s) 127, 516
SspMI CTAG 3 cut(s) 299, 731, 1446
StuI AGGCCT 1 cut(s) 362
StyD4I CCNGG 8 cut(s) 74, 145, 275, 362, 525, 606, 707, 899
StyI CCWWGG 2 cut(s) 702, 927
TaaI ACNGT 2 cut(s) 614, 1351
TaiI ACGT 7 cut(s) 513, 664, 780, 852, 1225, 1285, 1330
TaqI TCGA 8 cut(s) 50, 585, 689, 780, 857, 867, 978, 1139
TasI AATT 5 cut(s) 230, 1305, 1312, 1453, 1458
TatI WGTACW 2 cut(s) 1119, 1287
TfiI GAWTC 1 cut(s) 1319
Tru1I TTAA 8 cut(s) 153, 572, 594, 656, 1124, 1248, 1457, 1462
Tru9I TTAA 8 cut(s) 153, 572, 594, 656, 1124, 1248, 1457, 1462
TscAI CASTG 3 cut(s) 921, 975, 1354
TseI GCWGC 6 cut(s) 71, 80, 83, 142, 1088, 1419
TspDTI ATGAA 4 cut(s) 458, 617, 1275, 1311
TspRI CASTG 3 cut(s) 921, 975, 1354
Van91I CCANNNNNTGG 2 cut(s) 174, 928
VpaK11BI GGWCC 2 cut(s) 272, 1063
XapI RAATTY 2 cut(s) 1305, 1312
XcmI CCANNNNNNNNNTGG 1 cut(s) 1184
XhoI CTCGAG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 3 cut(s) 299, 731, 1446
ZraI GACGTC 1 cut(s) 1223
ZrmI AGTACT 1 cut(s) 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.