Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Lipase_GDSL | PF00657 | 33 - 351 | 4.1e-32 | GDSL-like Lipase/Acylhydrolase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1104 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 808 |
| AccIII | TCCGGA | 1 cut(s) | 353 |
| AciI | CCGC | 1 cut(s) | 899 |
| AclWI | GGATC | 5 cut(s) | 507, 520, 748, 798, 978 |
| AcsI | RAATTY | 2 cut(s) | 476, 838 |
| AcuI | CTGAAG | 2 cut(s) | 180, 837 |
| AdeI | CACNNNGTG | 1 cut(s) | 404 |
| AfaI | GTAC | 1 cut(s) | 43 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 176, 216, 808, 914, 974 |
| AflIII | ACRYGT | 1 cut(s) | 582 |
| AgeI | ACCGGT | 1 cut(s) | 212 |
| AjnI | CCWGG | 1 cut(s) | 801 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 791, 823 |
| AluBI | AGCT | 7 cut(s) | 315, 647, 821, 963, 1043, 1077, 1099 |
| AluI | AGCT | 7 cut(s) | 315, 647, 821, 963, 1043, 1077, 1099 |
| Alw26I | GTCTC | 2 cut(s) | 577, 607 |
| AlwI | GGATC | 5 cut(s) | 507, 520, 748, 798, 978 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1025 |
| Aor13HI | TCCGGA | 1 cut(s) | 353 |
| ApeKI | GCWGC | 1 cut(s) | 1025 |
| ApoI | RAATTY | 2 cut(s) | 476, 838 |
| AseI | ATTAAT | 2 cut(s) | 333, 1086 |
| AsiGI | ACCGGT | 1 cut(s) | 212 |
| AspS9I | GGNCC | 3 cut(s) | 7, 674, 812 |
| AsuC2I | CCSGG | 1 cut(s) | 1094 |
| AsuHPI | GGTGA | 4 cut(s) | 567, 749, 989, 1071 |
| AvaII | GGWCC | 3 cut(s) | 7, 674, 812 |
| BamHI | GGATCC | 1 cut(s) | 512 |
| BauI | CACGAG | 1 cut(s) | 635 |
| BbvI | GCAGC | 1 cut(s) | 1012 |
| BccI | CCATC | 2 cut(s) | 550, 1052 |
| BceAI | ACGGC | 1 cut(s) | 689 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 480, 514 |
| BciT130I | CCWGG | 1 cut(s) | 803 |
| BciVI | GTATCC | 1 cut(s) | 914 |
| BcnI | CCSGG | 1 cut(s) | 1094 |
| BcoDI | GTCTC | 2 cut(s) | 577, 607 |
| BfaI | CTAG | 2 cut(s) | 293, 648 |
| BfuI | GTATCC | 1 cut(s) | 914 |
| BisI | GCNGC | 1 cut(s) | 1026 |
| BlsI | GCNGC | 1 cut(s) | 1027 |
| Bme1390I | CCNGG | 2 cut(s) | 803, 1094 |
| Bme18I | GGWCC | 3 cut(s) | 7, 674, 812 |
| BmgT120I | GGNCC | 3 cut(s) | 7, 674, 812 |
| BmiI | GGNNCC | 4 cut(s) | 268, 349, 514, 813 |
| BmrFI | CCNGG | 2 cut(s) | 803, 1094 |
| BmrI | ACTGGG | 1 cut(s) | 689 |
| BmsI | GCATC | 4 cut(s) | 112, 189, 886, 994 |
| BmuI | ACTGGG | 1 cut(s) | 689 |
| BpmI | CTGGAG | 1 cut(s) | 366 |
| BpuEI | CTTGAG | 1 cut(s) | 608 |
| BpuMI | CCSGG | 1 cut(s) | 1094 |
| Bsa29I | ATCGAT | 2 cut(s) | 183, 982 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1008 |
| BsaI | GGTCTC | 1 cut(s) | 607 |
| BsaJI | CCNNGG | 1 cut(s) | 757 |
| BsaWI | WCCGGW | 2 cut(s) | 212, 353 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 949, 979 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 176, 216, 808, 914, 974 |
| Bse118I | RCCGGY | 1 cut(s) | 212 |
| Bse1I | ACTGG | 1 cut(s) | 684 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1008 |
| BseAI | TCCGGA | 1 cut(s) | 353 |
| BseBI | CCWGG | 1 cut(s) | 803 |
| BseCI | ATCGAT | 2 cut(s) | 183, 982 |
| BseDI | CCNNGG | 1 cut(s) | 757 |
| BseGI | GGATG | 4 cut(s) | 542, 901, 1009, 1012 |
| BseJI | GATNNNNATC | 1 cut(s) | 1008 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 176, 216, 808, 914, 974 |
| BseMII | CTCAG | 1 cut(s) | 337 |
| BseNI | ACTGG | 1 cut(s) | 684 |
| BseRI | GAGGAG | 1 cut(s) | 159 |
| BseXI | GCAGC | 1 cut(s) | 1012 |
| BsgI | GTGCAG | 1 cut(s) | 617 |
| BshTI | ACCGGT | 1 cut(s) | 212 |
| BshVI | ATCGAT | 2 cut(s) | 183, 982 |
| BsiSI | CCGG | 3 cut(s) | 213, 354, 1093 |
| BslFI | GGGAC | 2 cut(s) | 122, 380 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 176, 216, 808, 914, 974 |
| BsmAI | GTCTC | 2 cut(s) | 577, 607 |
| BsmFI | GGGAC | 2 cut(s) | 122, 380 |
| Bso31I | GGTCTC | 1 cut(s) | 607 |
| Bsp13I | TCCGGA | 1 cut(s) | 353 |
| Bsp1407I | TGTACA | 1 cut(s) | 41 |
| Bsp143I | GATC | 7 cut(s) | 501, 512, 753, 790, 861, 979, 983 |
| BspACI | CCGC | 1 cut(s) | 899 |
| BspCNI | CTCAG | 1 cut(s) | 336 |
| BspDI | ATCGAT | 2 cut(s) | 183, 982 |
| BspEI | TCCGGA | 1 cut(s) | 353 |
| BspHI | TCATGA | 2 cut(s) | 562, 855 |
| BspLI | GGNNCC | 4 cut(s) | 268, 349, 514, 813 |
| BspPI | GGATC | 5 cut(s) | 507, 520, 748, 798, 978 |
| BspTNI | GGTCTC | 1 cut(s) | 607 |
| BsrFI | RCCGGY | 1 cut(s) | 212 |
| BsrGI | TGTACA | 1 cut(s) | 41 |
| BsrI | ACTGG | 1 cut(s) | 684 |
| BssAI | RCCGGY | 1 cut(s) | 212 |
| BssECI | CCNNGG | 1 cut(s) | 757 |
| BssMI | GATC | 7 cut(s) | 501, 512, 753, 790, 861, 979, 983 |
| BssSI | CACGAG | 1 cut(s) | 635 |
| BssT1I | CCWWGG | 1 cut(s) | 757 |
| Bst2BI | CACGAG | 1 cut(s) | 635 |
| Bst2UI | CCWGG | 1 cut(s) | 803 |
| Bst4CI | ACNGT | 2 cut(s) | 46, 909 |
| Bst6I | CTCTTC | 1 cut(s) | 385 |
| BstAUI | TGTACA | 1 cut(s) | 41 |
| BstC8I | GCNNGC | 1 cut(s) | 313 |
| BstDEI | CTNAG | 3 cut(s) | 323, 1044, 1116 |
| BstF5I | GGATG | 4 cut(s) | 542, 901, 1009, 1012 |
| BstKTI | GATC | 7 cut(s) | 504, 515, 756, 793, 864, 982, 986 |
| BstMAI | GTCTC | 2 cut(s) | 577, 607 |
| BstMBI | GATC | 7 cut(s) | 501, 512, 753, 790, 861, 979, 983 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 347 |
| BstNI | CCWGG | 1 cut(s) | 803 |
| BstSCI | CCNGG | 2 cut(s) | 801, 1092 |
| BstV1I | GCAGC | 1 cut(s) | 1012 |
| BstX2I | RGATCY | 1 cut(s) | 512 |
| BstYI | RGATCY | 1 cut(s) | 512 |
| Bsu15I | ATCGAT | 2 cut(s) | 183, 982 |
| BsuI | GTATCC | 1 cut(s) | 914 |
| BsuTUI | ATCGAT | 2 cut(s) | 183, 982 |
| BtsCI | GGATG | 4 cut(s) | 542, 901, 1009, 1012 |
| BtsI | GCAGTG | 2 cut(s) | 398, 727 |
| BtsIMutI | CAGTG | 3 cut(s) | 398, 677, 727 |
| Cac8I | GCNNGC | 1 cut(s) | 313 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1025 |
| CciI | TCATGA | 2 cut(s) | 562, 855 |
| Cfr10I | RCCGGY | 1 cut(s) | 212 |
| Cfr13I | GGNCC | 3 cut(s) | 7, 674, 812 |
| ClaI | ATCGAT | 2 cut(s) | 183, 982 |
| CseI | GACGC | 1 cut(s) | 911 |
| CsiI | ACCWGGT | 1 cut(s) | 801 |
| Csp6I | GTAC | 1 cut(s) | 42 |
| CspAI | ACCGGT | 1 cut(s) | 212 |
| CviAII | CATG | 5 cut(s) | 442, 563, 598, 856, 946 |
| CviQI | GTAC | 1 cut(s) | 42 |
| DdeI | CTNAG | 3 cut(s) | 323, 1044, 1116 |
| DpnI | GATC | 7 cut(s) | 503, 514, 755, 792, 863, 981, 985 |
| DpnII | GATC | 7 cut(s) | 501, 512, 753, 790, 861, 979, 983 |
| DraIII | CACNNNGTG | 1 cut(s) | 404 |
| Eam1104I | CTCTTC | 1 cut(s) | 385 |
| EarI | CTCTTC | 1 cut(s) | 385 |
| Eco130I | CCWWGG | 1 cut(s) | 757 |
| Eco31I | GGTCTC | 1 cut(s) | 607 |
| Eco47I | GGWCC | 3 cut(s) | 7, 674, 812 |
| Eco57I | CTGAAG | 2 cut(s) | 180, 837 |
| EcoO109I | RGGNCCY | 2 cut(s) | 7, 812 |
| EcoRII | CCWGG | 1 cut(s) | 801 |
| EcoT14I | CCWWGG | 1 cut(s) | 757 |
| ErhI | CCWWGG | 1 cut(s) | 757 |
| FaeI | CATG | 5 cut(s) | 445, 566, 601, 859, 949 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 479, 511 |
| FaqI | GGGAC | 2 cut(s) | 122, 380 |
| FatI | CATG | 5 cut(s) | 441, 562, 597, 855, 945 |
| Fnu4HI | GCNGC | 1 cut(s) | 1026 |
| FokI | GGATG | 4 cut(s) | 529, 908, 999, 1016 |
| Fsp4HI | GCNGC | 1 cut(s) | 1026 |
| FspBI | CTAG | 2 cut(s) | 293, 648 |
| GluI | GCNGC | 1 cut(s) | 1026 |
| GsuI | CTGGAG | 1 cut(s) | 366 |
| HapII | CCGG | 3 cut(s) | 213, 354, 1093 |
| HgaI | GACGC | 1 cut(s) | 911 |
| Hin1II | CATG | 5 cut(s) | 445, 566, 601, 859, 949 |
| HinfI | GANTC | 3 cut(s) | 110, 164, 393 |
| HpaII | CCGG | 3 cut(s) | 213, 354, 1093 |
| HphI | GGTGA | 4 cut(s) | 567, 749, 989, 1071 |
| Hpy166II | GTNNAC | 3 cut(s) | 203, 222, 448 |
| Hpy188I | TCNGA | 3 cut(s) | 15, 244, 326 |
| Hpy188III | TCNNGA | 8 cut(s) | 154, 257, 345, 354, 499, 563, 815, 856 |
| Hpy8I | GTNNAC | 3 cut(s) | 203, 222, 448 |
| HpyAV | CCTTC | 4 cut(s) | 20, 481, 703, 945 |
| HpyCH4III | ACNGT | 2 cut(s) | 46, 909 |
| HpyCH4IV | ACGT | 2 cut(s) | 450, 584 |
| HpyCH4V | TGCA | 4 cut(s) | 125, 634, 687, 836 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 347 |
| HpyF3I | CTNAG | 3 cut(s) | 323, 1044, 1116 |
| HpySE526I | ACGT | 2 cut(s) | 450, 584 |
| Hsp92II | CATG | 5 cut(s) | 445, 566, 601, 859, 949 |
| Kpn2I | TCCGGA | 1 cut(s) | 353 |
| Kzo9I | GATC | 7 cut(s) | 501, 512, 753, 790, 861, 979, 983 |
| LmnI | GCTCC | 4 cut(s) | 266, 347, 644, 1096 |
| Lsp1109I | GCAGC | 1 cut(s) | 1012 |
| LweI | GCATC | 4 cut(s) | 112, 189, 886, 994 |
| MabI | ACCWGGT | 1 cut(s) | 801 |
| MaeI | CTAG | 2 cut(s) | 293, 648 |
| MaeII | ACGT | 2 cut(s) | 450, 584 |
| MaeIII | GTNAC | 2 cut(s) | 437, 725 |
| MalI | GATC | 7 cut(s) | 503, 514, 755, 792, 863, 981, 985 |
| MboI | GATC | 7 cut(s) | 501, 512, 753, 790, 861, 979, 983 |
| MboII | GAAGA | 6 cut(s) | 26, 136, 402, 487, 844, 871 |
| MfeI | CAATTG | 1 cut(s) | 507 |
| MflI | RGATCY | 1 cut(s) | 512 |
| MluCI | AATT | 9 cut(s) | 318, 330, 334, 418, 476, 507, 838, 871, 1111 |
| MlyI | GAGTC | 3 cut(s) | 104, 158, 402 |
| MmeI | TCCRAC | 7 cut(s) | 540, 562, 613, 646, 652, 768, 1040 |
| MnlI | CCTC | 6 cut(s) | 61, 180, 320, 361, 1015, 1041 |
| MroI | TCCGGA | 1 cut(s) | 353 |
| MseI | TTAA | 5 cut(s) | 189, 333, 708, 891, 1086 |
| MslI | CAYNNNNRTG | 2 cut(s) | 854, 882 |
| MspI | CCGG | 3 cut(s) | 213, 354, 1093 |
| MspR9I | CCNGG | 2 cut(s) | 803, 1094 |
| MunI | CAATTG | 1 cut(s) | 507 |
| MvaI | CCWGG | 1 cut(s) | 803 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 347 |
| NciI | CCSGG | 1 cut(s) | 1094 |
| NdeII | GATC | 7 cut(s) | 501, 512, 753, 790, 861, 979, 983 |
| NlaIII | CATG | 5 cut(s) | 445, 566, 601, 859, 949 |
| NlaIV | GGNNCC | 4 cut(s) | 268, 349, 514, 813 |
| NmuCI | GTSAC | 1 cut(s) | 725 |
| PagI | TCATGA | 2 cut(s) | 562, 855 |
| PflFI | GACNNNGTC | 1 cut(s) | 569 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 808 |
| PfoI | TCCNGGA | 1 cut(s) | 1092 |
| PinAI | ACCGGT | 1 cut(s) | 212 |
| PkrI | GCNGC | 1 cut(s) | 1027 |
| PleI | GAGTC | 3 cut(s) | 104, 158, 401 |
| PpsI | GAGTC | 3 cut(s) | 104, 158, 401 |
| PpuMI | RGGWCCY | 2 cut(s) | 7, 812 |
| PshBI | ATTAAT | 2 cut(s) | 333, 1086 |
| PsiI | TTATAA | 1 cut(s) | 1104 |
| Psp5II | RGGWCCY | 2 cut(s) | 7, 812 |
| Psp6I | CCWGG | 1 cut(s) | 801 |
| PspGI | CCWGG | 1 cut(s) | 801 |
| PspN4I | GGNNCC | 4 cut(s) | 268, 349, 514, 813 |
| PspPI | GGNCC | 3 cut(s) | 7, 674, 812 |
| PspPPI | RGGWCCY | 2 cut(s) | 7, 812 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1025 |
| PsuI | RGATCY | 1 cut(s) | 512 |
| PsyI | GACNNNGTC | 1 cut(s) | 569 |
| RsaI | GTAC | 1 cut(s) | 43 |
| RsaNI | GTAC | 1 cut(s) | 42 |
| RseI | CAYNNNNRTG | 2 cut(s) | 854, 882 |
| SaqAI | TTAA | 5 cut(s) | 189, 333, 708, 891, 1086 |
| SatI | GCNGC | 1 cut(s) | 1026 |
| Sau3AI | GATC | 7 cut(s) | 501, 512, 753, 790, 861, 979, 983 |
| Sau96I | GGNCC | 3 cut(s) | 7, 674, 812 |
| SchI | GAGTC | 3 cut(s) | 104, 158, 402 |
| ScrFI | CCNGG | 2 cut(s) | 803, 1094 |
| SexAI | ACCWGGT | 1 cut(s) | 801 |
| SfaNI | GCATC | 4 cut(s) | 112, 189, 886, 994 |
| SinI | GGWCC | 3 cut(s) | 7, 674, 812 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 854, 882 |
| SmlI | CTYRAG | 1 cut(s) | 623 |
| SmoI | CTYRAG | 1 cut(s) | 623 |
| Sse9I | AATT | 9 cut(s) | 318, 330, 334, 418, 476, 507, 838, 871, 1111 |
| SsiI | CCGC | 1 cut(s) | 899 |
| SspI | AATATT | 1 cut(s) | 360 |
| SspMI | CTAG | 2 cut(s) | 293, 648 |
| StyD4I | CCNGG | 2 cut(s) | 801, 1092 |
| StyI | CCWWGG | 1 cut(s) | 757 |
| TaaI | ACNGT | 2 cut(s) | 46, 909 |
| TaiI | ACGT | 2 cut(s) | 453, 587 |
| TaqI | TCGA | 5 cut(s) | 155, 183, 232, 500, 982 |
| TasI | AATT | 9 cut(s) | 318, 330, 334, 418, 476, 507, 838, 871, 1111 |
| TatI | WGTACW | 1 cut(s) | 41 |
| Tru1I | TTAA | 5 cut(s) | 189, 333, 708, 891, 1086 |
| Tru9I | TTAA | 5 cut(s) | 189, 333, 708, 891, 1086 |
| TscAI | CASTG | 3 cut(s) | 405, 684, 734 |
| TseFI | GTSAC | 1 cut(s) | 725 |
| TseI | GCWGC | 1 cut(s) | 1025 |
| Tsp45I | GTSAC | 1 cut(s) | 725 |
| TspDTI | ATGAA | 9 cut(s) | 40, 381, 586, 646, 685, 844, 872, 934, 1080 |
| TspRI | CASTG | 3 cut(s) | 405, 684, 734 |
| Tth111I | GACNNNGTC | 1 cut(s) | 569 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 808 |
| VpaK11BI | GGWCC | 3 cut(s) | 7, 674, 812 |
| VspI | ATTAAT | 2 cut(s) | 333, 1086 |
| XapI | RAATTY | 2 cut(s) | 476, 838 |
| XspI | CTAG | 2 cut(s) | 293, 648 |