Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 18 - 66 | 1.9e-07 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 341 |
| AccB1I | GGYRCC | 1 cut(s) | 232 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 66 |
| AccII | CGCG | 1 cut(s) | 533 |
| AciI | CCGC | 3 cut(s) | 178, 236, 364 |
| AclWI | GGATC | 2 cut(s) | 409, 422 |
| AcoI | YGGCCR | 1 cut(s) | 564 |
| AcsI | RAATTY | 1 cut(s) | 437 |
| AcyI | GRCGYC | 1 cut(s) | 409 |
| AfaI | GTAC | 1 cut(s) | 421 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 66, 280, 567 |
| AflII | CTTAAG | 1 cut(s) | 446 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AjnI | CCWGG | 1 cut(s) | 422 |
| AleI | CACNNNNGTG | 1 cut(s) | 311 |
| AlwI | GGATC | 2 cut(s) | 409, 422 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 557 |
| AoxI | GGCC | 3 cut(s) | 18, 271, 564 |
| ApoI | RAATTY | 1 cut(s) | 437 |
| AspA2I | CCTAGG | 1 cut(s) | 496 |
| AspLEI | GCGC | 2 cut(s) | 72, 342 |
| AspS9I | GGNCC | 3 cut(s) | 19, 164, 271 |
| AsuC2I | CCSGG | 2 cut(s) | 103, 568 |
| AsuHPI | GGTGA | 2 cut(s) | 277, 442 |
| AsuII | TTCGAA | 1 cut(s) | 126 |
| AvaII | GGWCC | 1 cut(s) | 164 |
| AvrII | CCTAGG | 1 cut(s) | 496 |
| BamHI | GGATCC | 1 cut(s) | 414 |
| BanI | GGYRCC | 1 cut(s) | 232 |
| BanII | GRGCYC | 1 cut(s) | 216 |
| BccI | CCATC | 2 cut(s) | 203, 584 |
| BciT130I | CCWGG | 1 cut(s) | 424 |
| BclI | TGATCA | 1 cut(s) | 516 |
| BcnI | CCSGG | 2 cut(s) | 103, 568 |
| BfaI | CTAG | 3 cut(s) | 38, 221, 497 |
| BfrI | CTTAAG | 1 cut(s) | 446 |
| BisI | GCNGC | 1 cut(s) | 236 |
| BlnI | CCTAGG | 1 cut(s) | 496 |
| BlsI | GCNGC | 1 cut(s) | 237 |
| Bme1390I | CCNGG | 3 cut(s) | 103, 424, 568 |
| Bme18I | GGWCC | 1 cut(s) | 164 |
| BmgT120I | GGNCC | 3 cut(s) | 19, 164, 271 |
| BmiI | GGNNCC | 5 cut(s) | 21, 165, 234, 272, 416 |
| BmrFI | CCNGG | 3 cut(s) | 103, 424, 568 |
| BmsI | GCATC | 6 cut(s) | 81, 88, 129, 159, 329, 481 |
| Bpu14I | TTCGAA | 1 cut(s) | 126 |
| BpuMI | CCSGG | 2 cut(s) | 103, 568 |
| BsaHI | GRCGYC | 1 cut(s) | 409 |
| BsaJI | CCNNGG | 4 cut(s) | 102, 167, 496, 561 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 368, 398 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 66, 280, 567 |
| Bse1I | ACTGG | 2 cut(s) | 121, 586 |
| BseBI | CCWGG | 1 cut(s) | 424 |
| BseDI | CCNNGG | 4 cut(s) | 102, 167, 496, 561 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 66, 280, 567 |
| BseNI | ACTGG | 2 cut(s) | 121, 586 |
| BseRI | GAGGAG | 3 cut(s) | 242, 386, 389 |
| Bsh1236I | CGCG | 1 cut(s) | 533 |
| BshFI | GGCC | 3 cut(s) | 20, 273, 566 |
| BshNI | GGYRCC | 1 cut(s) | 232 |
| BsiSI | CCGG | 3 cut(s) | 102, 406, 567 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 66, 280, 567 |
| BsnI | GGCC | 3 cut(s) | 20, 273, 566 |
| Bsp119I | TTCGAA | 1 cut(s) | 126 |
| Bsp1286I | GDGCHC | 1 cut(s) | 216 |
| Bsp143I | GATC | 5 cut(s) | 77, 346, 414, 432, 516 |
| Bsp19I | CCATGG | 2 cut(s) | 167, 561 |
| BspACI | CCGC | 3 cut(s) | 178, 236, 364 |
| BspANI | GGCC | 3 cut(s) | 20, 273, 566 |
| BspFNI | CGCG | 1 cut(s) | 533 |
| BspLI | GGNNCC | 5 cut(s) | 21, 165, 234, 272, 416 |
| BspPI | GGATC | 2 cut(s) | 409, 422 |
| BspT104I | TTCGAA | 1 cut(s) | 126 |
| BspT107I | GGYRCC | 1 cut(s) | 232 |
| BspTI | CTTAAG | 1 cut(s) | 446 |
| BsrI | ACTGG | 2 cut(s) | 121, 586 |
| BssECI | CCNNGG | 4 cut(s) | 102, 167, 496, 561 |
| BssMI | GATC | 5 cut(s) | 77, 346, 414, 432, 516 |
| BssNI | GRCGYC | 1 cut(s) | 409 |
| BssT1I | CCWWGG | 3 cut(s) | 167, 496, 561 |
| Bst2UI | CCWGG | 1 cut(s) | 424 |
| BstACI | GRCGYC | 1 cut(s) | 409 |
| BstAFI | CTTAAG | 1 cut(s) | 446 |
| BstBI | TTCGAA | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstDSI | CCRYGG | 2 cut(s) | 167, 561 |
| BstFNI | CGCG | 1 cut(s) | 533 |
| BstHHI | GCGC | 2 cut(s) | 72, 342 |
| BstKTI | GATC | 5 cut(s) | 80, 349, 417, 435, 519 |
| BstMBI | GATC | 5 cut(s) | 77, 346, 414, 432, 516 |
| BstNI | CCWGG | 1 cut(s) | 424 |
| BstSCI | CCNGG | 3 cut(s) | 101, 422, 566 |
| BstUI | CGCG | 1 cut(s) | 533 |
| BstX2I | RGATCY | 1 cut(s) | 414 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 193 |
| BstYI | RGATCY | 1 cut(s) | 414 |
| BsuRI | GGCC | 3 cut(s) | 20, 273, 566 |
| BtgI | CCRYGG | 2 cut(s) | 167, 561 |
| BtsIMutI | CAGTG | 1 cut(s) | 579 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| CaiI | CAGNNNCTG | 1 cut(s) | 557 |
| CfoI | GCGC | 2 cut(s) | 72, 342 |
| Cfr13I | GGNCC | 3 cut(s) | 19, 164, 271 |
| CseI | GACGC | 2 cut(s) | 398, 539 |
| Csp6I | GTAC | 1 cut(s) | 420 |
| CviAII | CATG | 4 cut(s) | 158, 168, 187, 562 |
| CviJI | RGCY | 9 cut(s) | 5, 20, 214, 254, 273, 459, 478, 566, 571 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 20, 214, 254, 273, 459, 478, 566, 571 |
| CviQI | GTAC | 1 cut(s) | 420 |
| DpnI | GATC | 5 cut(s) | 79, 348, 416, 434, 518 |
| DpnII | GATC | 5 cut(s) | 77, 346, 414, 432, 516 |
| EaeI | YGGCCR | 1 cut(s) | 564 |
| EciI | GGCGGA | 1 cut(s) | 379 |
| Eco130I | CCWWGG | 3 cut(s) | 167, 496, 561 |
| Eco24I | GRGCYC | 1 cut(s) | 216 |
| Eco47I | GGWCC | 1 cut(s) | 164 |
| EcoO109I | RGGNCCY | 1 cut(s) | 271 |
| EcoRI | GAATTC | 1 cut(s) | 437 |
| EcoRII | CCWGG | 1 cut(s) | 422 |
| EcoT14I | CCWWGG | 3 cut(s) | 167, 496, 561 |
| EcoT38I | GRGCYC | 1 cut(s) | 216 |
| ErhI | CCWWGG | 3 cut(s) | 167, 496, 561 |
| FaeI | CATG | 4 cut(s) | 161, 171, 190, 565 |
| FaiI | YATR | 9 cut(s) | 92, 159, 169, 188, 205, 207, 300, 344, 563 |
| FatI | CATG | 4 cut(s) | 157, 167, 186, 561 |
| FauNDI | CATATG | 1 cut(s) | 205 |
| FbaI | TGATCA | 1 cut(s) | 516 |
| Fnu4HI | GCNGC | 1 cut(s) | 236 |
| FriOI | GRGCYC | 1 cut(s) | 216 |
| Fsp4HI | GCNGC | 1 cut(s) | 236 |
| FspAI | RTGCGCAY | 1 cut(s) | 341 |
| FspBI | CTAG | 3 cut(s) | 38, 221, 497 |
| FspI | TGCGCA | 1 cut(s) | 341 |
| GlaI | GCGC | 2 cut(s) | 71, 341 |
| GluI | GCNGC | 1 cut(s) | 236 |
| HaeIII | GGCC | 3 cut(s) | 20, 273, 566 |
| HapII | CCGG | 3 cut(s) | 102, 406, 567 |
| HgaI | GACGC | 2 cut(s) | 398, 539 |
| HhaI | GCGC | 2 cut(s) | 72, 342 |
| Hin1I | GRCGYC | 1 cut(s) | 409 |
| Hin1II | CATG | 4 cut(s) | 161, 171, 190, 565 |
| Hin6I | GCGC | 2 cut(s) | 70, 340 |
| HinP1I | GCGC | 2 cut(s) | 70, 340 |
| HinfI | GANTC | 3 cut(s) | 42, 241, 535 |
| HpaII | CCGG | 3 cut(s) | 102, 406, 567 |
| HphI | GGTGA | 2 cut(s) | 277, 442 |
| Hpy188I | TCNGA | 4 cut(s) | 77, 246, 351, 414 |
| Hpy188III | TCNNGA | 2 cut(s) | 467, 488 |
| Hpy99I | CGWCG | 1 cut(s) | 414 |
| HpyAV | CCTTC | 2 cut(s) | 361, 421 |
| HpyCH4V | TGCA | 5 cut(s) | 94, 157, 203, 289, 302 |
| Hsp92I | GRCGYC | 1 cut(s) | 409 |
| Hsp92II | CATG | 4 cut(s) | 161, 171, 190, 565 |
| HspAI | GCGC | 2 cut(s) | 70, 340 |
| Ksp22I | TGATCA | 1 cut(s) | 516 |
| Kzo9I | GATC | 5 cut(s) | 77, 346, 414, 432, 516 |
| LmnI | GCTCC | 1 cut(s) | 376 |
| LweI | GCATC | 6 cut(s) | 81, 88, 129, 159, 329, 481 |
| MaeI | CTAG | 3 cut(s) | 38, 221, 497 |
| MalI | GATC | 5 cut(s) | 79, 348, 416, 434, 518 |
| MboI | GATC | 5 cut(s) | 77, 346, 414, 432, 516 |
| MboII | GAAGA | 1 cut(s) | 536 |
| MfeI | CAATTG | 1 cut(s) | 54 |
| MflI | RGATCY | 1 cut(s) | 414 |
| MhlI | GDGCHC | 1 cut(s) | 216 |
| MluCI | AATT | 2 cut(s) | 54, 437 |
| MmeI | TCCRAC | 1 cut(s) | 392 |
| MseI | TTAA | 3 cut(s) | 386, 447, 453 |
| MslI | CAYNNNNRTG | 2 cut(s) | 191, 311 |
| MspA1I | CMGCKG | 1 cut(s) | 238 |
| MspCI | CTTAAG | 1 cut(s) | 446 |
| MspI | CCGG | 3 cut(s) | 102, 406, 567 |
| MspR9I | CCNGG | 3 cut(s) | 103, 424, 568 |
| MunI | CAATTG | 1 cut(s) | 54 |
| MvaI | CCWGG | 1 cut(s) | 424 |
| MvnI | CGCG | 1 cut(s) | 533 |
| NciI | CCSGG | 2 cut(s) | 103, 568 |
| NcoI | CCATGG | 2 cut(s) | 167, 561 |
| NdeI | CATATG | 1 cut(s) | 205 |
| NdeII | GATC | 5 cut(s) | 77, 346, 414, 432, 516 |
| NlaIII | CATG | 4 cut(s) | 161, 171, 190, 565 |
| NlaIV | GGNNCC | 5 cut(s) | 21, 165, 234, 272, 416 |
| NsbI | TGCGCA | 1 cut(s) | 341 |
| NspV | TTCGAA | 1 cut(s) | 126 |
| OliI | CACNNNNGTG | 1 cut(s) | 311 |
| PfeI | GAWTC | 3 cut(s) | 42, 241, 535 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 66 |
| PkrI | GCNGC | 1 cut(s) | 237 |
| Psp6I | CCWGG | 1 cut(s) | 422 |
| PspGI | CCWGG | 1 cut(s) | 422 |
| PspN4I | GGNNCC | 5 cut(s) | 21, 165, 234, 272, 416 |
| PspPI | GGNCC | 3 cut(s) | 19, 164, 271 |
| PstNI | CAGNNNCTG | 1 cut(s) | 557 |
| PsuI | RGATCY | 1 cut(s) | 414 |
| RsaI | GTAC | 1 cut(s) | 421 |
| RsaNI | GTAC | 1 cut(s) | 420 |
| RseI | CAYNNNNRTG | 2 cut(s) | 191, 311 |
| SaqAI | TTAA | 3 cut(s) | 386, 447, 453 |
| SatI | GCNGC | 1 cut(s) | 236 |
| Sau3AI | GATC | 5 cut(s) | 77, 346, 414, 432, 516 |
| Sau96I | GGNCC | 3 cut(s) | 19, 164, 271 |
| ScrFI | CCNGG | 3 cut(s) | 103, 424, 568 |
| SduI | GDGCHC | 1 cut(s) | 216 |
| SetI | ASST | 9 cut(s) | 202, 234, 386, 425, 432, 453, 502, 543, 589 |
| SfaNI | GCATC | 6 cut(s) | 81, 88, 129, 159, 329, 481 |
| SfuI | TTCGAA | 1 cut(s) | 126 |
| SinI | GGWCC | 1 cut(s) | 164 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 191, 311 |
| SmlI | CTYRAG | 1 cut(s) | 446 |
| SmoI | CTYRAG | 1 cut(s) | 446 |
| Sse9I | AATT | 2 cut(s) | 54, 437 |
| SsiI | CCGC | 3 cut(s) | 178, 236, 364 |
| SspMI | CTAG | 3 cut(s) | 38, 221, 497 |
| StyD4I | CCNGG | 3 cut(s) | 101, 422, 566 |
| StyI | CCWWGG | 3 cut(s) | 167, 496, 561 |
| TaqI | TCGA | 3 cut(s) | 126, 399, 435 |
| TaqII | GACCGA | 1 cut(s) | 206 |
| TasI | AATT | 2 cut(s) | 54, 437 |
| TauI | GCSGC | 1 cut(s) | 238 |
| TfiI | GAWTC | 3 cut(s) | 42, 241, 535 |
| Tru1I | TTAA | 3 cut(s) | 386, 447, 453 |
| Tru9I | TTAA | 3 cut(s) | 386, 447, 453 |
| TscAI | CASTG | 1 cut(s) | 586 |
| TspDTI | ATGAA | 1 cut(s) | 472 |
| TspGWI | ACGGA | 1 cut(s) | 407 |
| TspRI | CASTG | 1 cut(s) | 586 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 66 |
| Vha464I | CTTAAG | 1 cut(s) | 446 |
| VpaK11BI | GGWCC | 1 cut(s) | 164 |
| XapI | RAATTY | 1 cut(s) | 437 |
| XmaJI | CCTAGG | 1 cut(s) | 496 |
| XspI | CTAG | 3 cut(s) | 38, 221, 497 |