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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 403 |
| AatII | GACGTC | 1 cut(s) | 178 |
| Acc36I | ACCTGC | 1 cut(s) | 403 |
| AciI | CCGC | 1 cut(s) | 17 |
| AclWI | GGATC | 2 cut(s) | 4, 57 |
| AcsI | RAATTY | 1 cut(s) | 266 |
| AcyI | GRCGYC | 1 cut(s) | 175 |
| AfaI | GTAC | 1 cut(s) | 68 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 364 |
| AgsI | TTSAA | 1 cut(s) | 265 |
| AluBI | AGCT | 5 cut(s) | 91, 142, 212, 260, 376 |
| AluI | AGCT | 5 cut(s) | 91, 142, 212, 260, 376 |
| Alw26I | GTCTC | 1 cut(s) | 154 |
| AlwI | GGATC | 2 cut(s) | 4, 57 |
| ApeKI | GCWGC | 2 cut(s) | 35, 209 |
| ApoI | RAATTY | 1 cut(s) | 266 |
| AsuC2I | CCSGG | 1 cut(s) | 14 |
| AsuHPI | GGTGA | 4 cut(s) | 44, 144, 384, 395 |
| AxyI | CCTNAGG | 1 cut(s) | 180 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 224, 257 |
| BbvI | GCAGC | 2 cut(s) | 22, 221 |
| BccI | CCATC | 1 cut(s) | 322 |
| BcnI | CCSGG | 1 cut(s) | 14 |
| BcoDI | GTCTC | 1 cut(s) | 154 |
| BfaI | CTAG | 1 cut(s) | 399 |
| BfuAI | ACCTGC | 1 cut(s) | 403 |
| BisI | GCNGC | 2 cut(s) | 36, 210 |
| BlsI | GCNGC | 2 cut(s) | 37, 211 |
| BmcAI | AGTACT | 1 cut(s) | 68 |
| Bme1390I | CCNGG | 1 cut(s) | 14 |
| BmrFI | CCNGG | 1 cut(s) | 14 |
| BmrI | ACTGGG | 1 cut(s) | 312 |
| BmuI | ACTGGG | 1 cut(s) | 312 |
| BpmI | CTGGAG | 1 cut(s) | 113 |
| BpuMI | CCSGG | 1 cut(s) | 14 |
| BsaAI | YACGTR | 1 cut(s) | 236 |
| BsaHI | GRCGYC | 1 cut(s) | 175 |
| BsaI | GGTCTC | 1 cut(s) | 154 |
| BsaJI | CCNNGG | 1 cut(s) | 55 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 364 |
| Bse1I | ACTGG | 1 cut(s) | 307 |
| Bse21I | CCTNAGG | 1 cut(s) | 180 |
| BseDI | CCNNGG | 1 cut(s) | 55 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 364 |
| BseNI | ACTGG | 1 cut(s) | 307 |
| BseRI | GAGGAG | 1 cut(s) | 323 |
| BseXI | GCAGC | 2 cut(s) | 22, 221 |
| BsiSI | CCGG | 1 cut(s) | 14 |
| BslFI | GGGAC | 2 cut(s) | 331, 346 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 364 |
| BsmAI | GTCTC | 1 cut(s) | 154 |
| BsmFI | GGGAC | 2 cut(s) | 331, 346 |
| BsmI | GAATGC | 1 cut(s) | 211 |
| Bso31I | GGTCTC | 1 cut(s) | 154 |
| Bsp143I | GATC | 2 cut(s) | 9, 49 |
| BspACI | CCGC | 1 cut(s) | 17 |
| BspMI | ACCTGC | 1 cut(s) | 403 |
| BspPI | GGATC | 2 cut(s) | 4, 57 |
| BspTNI | GGTCTC | 1 cut(s) | 154 |
| BsrI | ACTGG | 1 cut(s) | 307 |
| BssECI | CCNNGG | 1 cut(s) | 55 |
| BssMI | GATC | 2 cut(s) | 9, 49 |
| BssNI | GRCGYC | 1 cut(s) | 175 |
| BssT1I | CCWWGG | 1 cut(s) | 55 |
| Bst4CI | ACNGT | 1 cut(s) | 337 |
| BstACI | GRCGYC | 1 cut(s) | 175 |
| BstBAI | YACGTR | 1 cut(s) | 236 |
| BstC8I | GCNNGC | 1 cut(s) | 140 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstEII | GGTNACC | 1 cut(s) | 390 |
| BstKTI | GATC | 2 cut(s) | 12, 52 |
| BstMAI | GTCTC | 1 cut(s) | 154 |
| BstMBI | GATC | 2 cut(s) | 9, 49 |
| BstPI | GGTNACC | 1 cut(s) | 390 |
| BstSCI | CCNGG | 1 cut(s) | 12 |
| BstSNI | TACGTA | 1 cut(s) | 236 |
| BstV1I | GCAGC | 2 cut(s) | 22, 221 |
| Bsu36I | CCTNAGG | 1 cut(s) | 180 |
| BveI | ACCTGC | 1 cut(s) | 403 |
| Cac8I | GCNNGC | 1 cut(s) | 140 |
| Csp6I | GTAC | 1 cut(s) | 67 |
| CviJI | RGCY | 7 cut(s) | 35, 91, 142, 212, 260, 293, 376 |
| CviKI_1 | RGCY | 7 cut(s) | 35, 91, 142, 212, 260, 293, 376 |
| CviQI | GTAC | 1 cut(s) | 67 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 2 cut(s) | 11, 51 |
| DpnII | GATC | 2 cut(s) | 9, 49 |
| Eco105I | TACGTA | 1 cut(s) | 236 |
| Eco130I | CCWWGG | 1 cut(s) | 55 |
| Eco31I | GGTCTC | 1 cut(s) | 154 |
| Eco81I | CCTNAGG | 1 cut(s) | 180 |
| Eco91I | GGTNACC | 1 cut(s) | 390 |
| EcoO65I | GGTNACC | 1 cut(s) | 390 |
| EcoT14I | CCWWGG | 1 cut(s) | 55 |
| ErhI | CCWWGG | 1 cut(s) | 55 |
| FaiI | YATR | 4 cut(s) | 129, 243, 323, 365 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 53, 85 |
| FaqI | GGGAC | 2 cut(s) | 331, 346 |
| FauI | CCCGC | 1 cut(s) | 10 |
| Fnu4HI | GCNGC | 2 cut(s) | 36, 210 |
| Fsp4HI | GCNGC | 2 cut(s) | 36, 210 |
| FspBI | CTAG | 1 cut(s) | 399 |
| GluI | GCNGC | 2 cut(s) | 36, 210 |
| GsuI | CTGGAG | 1 cut(s) | 113 |
| HapII | CCGG | 1 cut(s) | 14 |
| Hin1I | GRCGYC | 1 cut(s) | 175 |
| HindIII | AAGCTT | 2 cut(s) | 140, 258 |
| HinfI | GANTC | 2 cut(s) | 83, 272 |
| HpaII | CCGG | 1 cut(s) | 14 |
| HphI | GGTGA | 4 cut(s) | 44, 144, 384, 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 173 |
| Hpy188III | TCNNGA | 1 cut(s) | 80 |
| Hpy8I | GTNNAC | 1 cut(s) | 173 |
| HpyAV | CCTTC | 2 cut(s) | 343, 374 |
| HpyCH4III | ACNGT | 1 cut(s) | 337 |
| HpyCH4IV | ACGT | 2 cut(s) | 175, 235 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 38, 209 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| HpySE526I | ACGT | 2 cut(s) | 175, 235 |
| Hsp92I | GRCGYC | 1 cut(s) | 175 |
| Kzo9I | GATC | 2 cut(s) | 9, 49 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| LpnPI | CCDG | 9 cut(s) | 27, 77, 93, 131, 203, 288, 362, 372, 408 |
| Lsp1109I | GCAGC | 2 cut(s) | 22, 221 |
| MaeI | CTAG | 1 cut(s) | 399 |
| MaeII | ACGT | 2 cut(s) | 175, 235 |
| MaeIII | GTNAC | 2 cut(s) | 383, 390 |
| MalI | GATC | 2 cut(s) | 11, 51 |
| MboI | GATC | 2 cut(s) | 9, 49 |
| MboII | GAAGA | 5 cut(s) | 73, 172, 175, 238, 241 |
| MfeI | CAATTG | 1 cut(s) | 5 |
| MluCI | AATT | 3 cut(s) | 5, 266, 411 |
| MlyI | GAGTC | 1 cut(s) | 92 |
| MmeI | TCCRAC | 1 cut(s) | 148 |
| MnlI | CCTC | 6 cut(s) | 88, 245, 286, 301, 334, 361 |
| MseI | TTAA | 4 cut(s) | 71, 201, 410, 415 |
| MslI | CAYNNNNRTG | 1 cut(s) | 132 |
| MspA1I | CMGCKG | 1 cut(s) | 212 |
| MspI | CCGG | 1 cut(s) | 14 |
| MspR9I | CCNGG | 1 cut(s) | 14 |
| MunI | CAATTG | 1 cut(s) | 5 |
| Mva1269I | GAATGC | 1 cut(s) | 211 |
| NciI | CCSGG | 1 cut(s) | 14 |
| NdeII | GATC | 2 cut(s) | 9, 49 |
| NmuCI | GTSAC | 2 cut(s) | 383, 390 |
| PaqCI | CACCTGC | 1 cut(s) | 403 |
| PctI | GAATGC | 1 cut(s) | 211 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PkrI | GCNGC | 2 cut(s) | 37, 211 |
| PleI | GAGTC | 1 cut(s) | 91 |
| PpsI | GAGTC | 1 cut(s) | 91 |
| Ppu21I | YACGTR | 1 cut(s) | 236 |
| PspEI | GGTNACC | 1 cut(s) | 390 |
| PvuII | CAGCTG | 1 cut(s) | 212 |
| RsaI | GTAC | 1 cut(s) | 68 |
| RsaNI | GTAC | 1 cut(s) | 67 |
| RseI | CAYNNNNRTG | 1 cut(s) | 132 |
| SaqAI | TTAA | 4 cut(s) | 71, 201, 410, 415 |
| SatI | GCNGC | 2 cut(s) | 36, 210 |
| Sau3AI | GATC | 2 cut(s) | 9, 49 |
| ScaI | AGTACT | 1 cut(s) | 68 |
| SchI | GAGTC | 1 cut(s) | 92 |
| ScrFI | CCNGG | 1 cut(s) | 14 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 132 |
| SnaBI | TACGTA | 1 cut(s) | 236 |
| Sse9I | AATT | 3 cut(s) | 5, 266, 411 |
| SsiI | CCGC | 1 cut(s) | 17 |
| SspMI | CTAG | 1 cut(s) | 399 |
| StyD4I | CCNGG | 1 cut(s) | 12 |
| StyI | CCWWGG | 1 cut(s) | 55 |
| TaaI | ACNGT | 1 cut(s) | 337 |
| TaiI | ACGT | 2 cut(s) | 178, 238 |
| TaqI | TCGA | 1 cut(s) | 86 |
| TasI | AATT | 3 cut(s) | 5, 266, 411 |
| TatI | WGTACW | 1 cut(s) | 66 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| Tru1I | TTAA | 4 cut(s) | 71, 201, 410, 415 |
| Tru9I | TTAA | 4 cut(s) | 71, 201, 410, 415 |
| TseFI | GTSAC | 2 cut(s) | 383, 390 |
| TseI | GCWGC | 2 cut(s) | 35, 209 |
| Tsp45I | GTSAC | 2 cut(s) | 383, 390 |
| TspDTI | ATGAA | 1 cut(s) | 297 |
| XapI | RAATTY | 1 cut(s) | 266 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 131 |
| XspI | CTAG | 1 cut(s) | 399 |
| ZraI | GACGTC | 1 cut(s) | 176 |
| ZrmI | AGTACT | 1 cut(s) | 68 |