Ubiquitin system component Cue protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1079 |
| AatII | GACGTC | 1 cut(s) | 1215 |
| Acc36I | ACCTGC | 2 cut(s) | 502, 1079 |
| AciI | CCGC | 4 cut(s) | 414, 554, 1181, 1281 |
| AclWI | GGATC | 1 cut(s) | 761 |
| AcsI | RAATTY | 2 cut(s) | 845, 1015 |
| AcuI | CTGAAG | 1 cut(s) | 449 |
| AcyI | GRCGYC | 2 cut(s) | 327, 1212 |
| AfaI | GTAC | 3 cut(s) | 248, 472, 887 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 282, 618 |
| AgsI | TTSAA | 9 cut(s) | 22, 491, 650, 845, 907, 920, 1000, 1015, 1264 |
| AjiI | CACGTC | 1 cut(s) | 577 |
| AjnI | CCWGG | 1 cut(s) | 1123 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 549, 581, 768, 800 |
| AleI | CACNNNNGTG | 1 cut(s) | 393 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 165, 197 |
| AluBI | AGCT | 7 cut(s) | 220, 346, 642, 686, 748, 932, 1011 |
| AluI | AGCT | 7 cut(s) | 220, 346, 642, 686, 748, 932, 1011 |
| Alw21I | GWGCWC | 5 cut(s) | 192, 205, 363, 544, 1272 |
| Alw26I | GTCTC | 1 cut(s) | 145 |
| AlwI | GGATC | 1 cut(s) | 761 |
| Ama87I | CYCGRG | 1 cut(s) | 78 |
| AoxI | GGCC | 3 cut(s) | 273, 620, 834 |
| ApoI | RAATTY | 2 cut(s) | 845, 1015 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 102, 975, 1119 |
| AspS9I | GGNCC | 6 cut(s) | 82, 223, 274, 285, 620, 1052 |
| AsuHPI | GGTGA | 4 cut(s) | 560, 677, 1103, 1170 |
| AvaI | CYCGRG | 1 cut(s) | 78 |
| AvaII | GGWCC | 4 cut(s) | 82, 223, 285, 1052 |
| BaeGI | GKGCMC | 1 cut(s) | 857 |
| BbsI | GAAGAC | 1 cut(s) | 1101 |
| Bbv12I | GWGCWC | 5 cut(s) | 192, 205, 363, 544, 1272 |
| BbvCI | CCTCAGC | 1 cut(s) | 498 |
| BccI | CCATC | 2 cut(s) | 371, 1078 |
| BceAI | ACGGC | 1 cut(s) | 831 |
| BciT130I | CCWGG | 1 cut(s) | 1125 |
| BcoDI | GTCTC | 1 cut(s) | 145 |
| BfaI | CTAG | 2 cut(s) | 32, 425 |
| BfmI | CTRYAG | 1 cut(s) | 681 |
| BfuAI | ACCTGC | 2 cut(s) | 502, 1079 |
| Bme1390I | CCNGG | 1 cut(s) | 1125 |
| Bme18I | GGWCC | 4 cut(s) | 82, 223, 285, 1052 |
| BmeT110I | CYCGRG | 1 cut(s) | 78 |
| BmgBI | CACGTC | 1 cut(s) | 577 |
| BmgT120I | GGNCC | 6 cut(s) | 82, 223, 274, 285, 620, 1052 |
| BmiI | GGNNCC | 2 cut(s) | 83, 286 |
| BmrFI | CCNGG | 1 cut(s) | 1125 |
| BmrI | ACTGGG | 1 cut(s) | 293 |
| BmsI | GCATC | 6 cut(s) | 243, 394, 561, 617, 827, 1149 |
| BmuI | ACTGGG | 1 cut(s) | 293 |
| BpiI | GAAGAC | 1 cut(s) | 1101 |
| BpmI | CTGGAG | 1 cut(s) | 534 |
| Bpu10I | CCTNAGC | 1 cut(s) | 498 |
| BpuEI | CTTGAG | 1 cut(s) | 739 |
| Bsa29I | ATCGAT | 1 cut(s) | 1118 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1139 |
| BsaHI | GRCGYC | 2 cut(s) | 327, 1212 |
| BsaI | GGTCTC | 1 cut(s) | 145 |
| BsaJI | CCNNGG | 3 cut(s) | 70, 612, 1245 |
| BsaWI | WCCGGW | 2 cut(s) | 287, 1219 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 282, 618 |
| Bse1I | ACTGG | 4 cut(s) | 137, 198, 268, 299 |
| Bse3DI | GCAATG | 1 cut(s) | 737 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1139 |
| BseBI | CCWGG | 1 cut(s) | 1125 |
| BseCI | ATCGAT | 1 cut(s) | 1118 |
| BseDI | CCNNGG | 3 cut(s) | 70, 612, 1245 |
| BseGI | GGATG | 4 cut(s) | 66, 576, 608, 818 |
| BseJI | GATNNNNATC | 1 cut(s) | 1139 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 282, 618 |
| BseMI | GCAATG | 1 cut(s) | 737 |
| BseMII | CTCAG | 4 cut(s) | 190, 489, 1047, 1242 |
| BseNI | ACTGG | 4 cut(s) | 137, 198, 268, 299 |
| BseRI | GAGGAG | 3 cut(s) | 515, 822, 877 |
| BseSI | GKGCMC | 1 cut(s) | 857 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1224 |
| BshFI | GGCC | 3 cut(s) | 275, 622, 836 |
| BshVI | ATCGAT | 1 cut(s) | 1118 |
| BsiEI | CGRYCG | 1 cut(s) | 1224 |
| BsiHKAI | GWGCWC | 5 cut(s) | 192, 205, 363, 544, 1272 |
| BsiHKCI | CYCGRG | 1 cut(s) | 78 |
| BsiSI | CCGG | 3 cut(s) | 288, 833, 1220 |
| BslFI | GGGAC | 2 cut(s) | 95, 826 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 282, 618 |
| BsmAI | GTCTC | 1 cut(s) | 145 |
| BsmFI | GGGAC | 2 cut(s) | 95, 826 |
| BsnI | GGCC | 3 cut(s) | 275, 622, 836 |
| Bso31I | GGTCTC | 1 cut(s) | 145 |
| BsoBI | CYCGRG | 1 cut(s) | 78 |
| Bsp1286I | GDGCHC | 6 cut(s) | 192, 205, 363, 544, 857, 1272 |
| Bsp143I | GATC | 2 cut(s) | 766, 1134 |
| Bsp19I | CCATGG | 2 cut(s) | 70, 612 |
| BspACI | CCGC | 4 cut(s) | 414, 554, 1181, 1281 |
| BspANI | GGCC | 3 cut(s) | 275, 622, 836 |
| BspCNI | CTCAG | 4 cut(s) | 189, 490, 1048, 1243 |
| BspDI | ATCGAT | 1 cut(s) | 1118 |
| BspHI | TCATGA | 3 cut(s) | 400, 894, 1131 |
| BspLI | GGNNCC | 2 cut(s) | 83, 286 |
| BspMAI | CTGCAG | 1 cut(s) | 685 |
| BspMI | ACCTGC | 2 cut(s) | 502, 1079 |
| BspPI | GGATC | 1 cut(s) | 761 |
| BspQI | GCTCTTC | 2 cut(s) | 210, 315 |
| BspTNI | GGTCTC | 1 cut(s) | 145 |
| BsrDI | GCAATG | 1 cut(s) | 737 |
| BsrI | ACTGG | 4 cut(s) | 137, 198, 268, 299 |
| BssECI | CCNNGG | 3 cut(s) | 70, 612, 1245 |
| BssMI | GATC | 2 cut(s) | 766, 1134 |
| BssNI | GRCGYC | 2 cut(s) | 327, 1212 |
| BssT1I | CCWWGG | 3 cut(s) | 70, 612, 1245 |
| Bst2UI | CCWGG | 1 cut(s) | 1125 |
| Bst4CI | ACNGT | 2 cut(s) | 392, 475 |
| Bst6I | CTCTTC | 4 cut(s) | 93, 210, 315, 966 |
| BstACI | GRCGYC | 2 cut(s) | 327, 1212 |
| BstC8I | GCNNGC | 2 cut(s) | 678, 927 |
| BstDEI | CTNAG | 6 cut(s) | 176, 435, 443, 498, 1056, 1251 |
| BstDSI | CCRYGG | 2 cut(s) | 70, 612 |
| BstF5I | GGATG | 4 cut(s) | 66, 576, 608, 818 |
| BstKTI | GATC | 2 cut(s) | 769, 1137 |
| BstMAI | GTCTC | 1 cut(s) | 145 |
| BstMBI | GATC | 2 cut(s) | 766, 1134 |
| BstMCI | CGRYCG | 1 cut(s) | 1224 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 314, 413, 518, 614, 725, 734 |
| BstNI | CCWGG | 1 cut(s) | 1125 |
| BstNSI | RCATGY | 2 cut(s) | 680, 1025 |
| BstSCI | CCNGG | 1 cut(s) | 1123 |
| BstSFI | CTRYAG | 1 cut(s) | 681 |
| BstSLI | GKGCMC | 1 cut(s) | 857 |
| BstV2I | GAAGAC | 1 cut(s) | 1101 |
| Bsu15I | ATCGAT | 1 cut(s) | 1118 |
| BsuRI | GGCC | 3 cut(s) | 275, 622, 836 |
| BsuTUI | ATCGAT | 1 cut(s) | 1118 |
| BtgI | CCRYGG | 2 cut(s) | 70, 612 |
| BtrI | CACGTC | 1 cut(s) | 577 |
| BtsCI | GGATG | 4 cut(s) | 66, 576, 608, 818 |
| BtsIMutI | CAGTG | 1 cut(s) | 205 |
| BveI | ACCTGC | 2 cut(s) | 502, 1079 |
| Cac8I | GCNNGC | 2 cut(s) | 678, 927 |
| CciI | TCATGA | 3 cut(s) | 400, 894, 1131 |
| Cfr13I | GGNCC | 6 cut(s) | 82, 223, 274, 285, 620, 1052 |
| ClaI | ATCGAT | 1 cut(s) | 1118 |
| CseI | GACGC | 1 cut(s) | 335 |
| Csp6I | GTAC | 3 cut(s) | 247, 471, 886 |
| CviQI | GTAC | 3 cut(s) | 247, 471, 886 |
| DdeI | CTNAG | 6 cut(s) | 176, 435, 443, 498, 1056, 1251 |
| DpnI | GATC | 2 cut(s) | 768, 1136 |
| DpnII | GATC | 2 cut(s) | 766, 1134 |
| Eam1104I | CTCTTC | 4 cut(s) | 93, 210, 315, 966 |
| EarI | CTCTTC | 4 cut(s) | 93, 210, 315, 966 |
| Eco130I | CCWWGG | 3 cut(s) | 70, 612, 1245 |
| Eco31I | GGTCTC | 1 cut(s) | 145 |
| Eco47I | GGWCC | 4 cut(s) | 82, 223, 285, 1052 |
| Eco57I | CTGAAG | 1 cut(s) | 449 |
| Eco88I | CYCGRG | 1 cut(s) | 78 |
| EcoRI | GAATTC | 1 cut(s) | 1015 |
| EcoRII | CCWGG | 1 cut(s) | 1123 |
| EcoT14I | CCWWGG | 3 cut(s) | 70, 612, 1245 |
| ErhI | CCWWGG | 3 cut(s) | 70, 612, 1245 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 447, 479 |
| FaqI | GGGAC | 2 cut(s) | 95, 826 |
| FokI | GGATG | 4 cut(s) | 53, 583, 595, 805 |
| FspBI | CTAG | 2 cut(s) | 32, 425 |
| GsuI | CTGGAG | 1 cut(s) | 534 |
| HaeIII | GGCC | 3 cut(s) | 275, 622, 836 |
| HapII | CCGG | 3 cut(s) | 288, 833, 1220 |
| HgaI | GACGC | 1 cut(s) | 335 |
| Hin1I | GRCGYC | 2 cut(s) | 327, 1212 |
| HincII | GTYRAC | 2 cut(s) | 449, 958 |
| HindII | GTYRAC | 2 cut(s) | 449, 958 |
| HindIII | AAGCTT | 1 cut(s) | 1009 |
| HinfI | GANTC | 7 cut(s) | 4, 103, 180, 865, 1115, 1120, 1128 |
| HpaII | CCGG | 3 cut(s) | 288, 833, 1220 |
| HphI | GGTGA | 4 cut(s) | 560, 677, 1103, 1170 |
| Hpy166II | GTNNAC | 3 cut(s) | 449, 958, 1174 |
| Hpy188I | TCNGA | 2 cut(s) | 179, 1145 |
| Hpy188III | TCNNGA | 8 cut(s) | 80, 401, 756, 895, 1055, 1112, 1132, 1202 |
| Hpy8I | GTNNAC | 3 cut(s) | 449, 958, 1174 |
| Hpy99I | CGWCG | 1 cut(s) | 581 |
| HpyAV | CCTTC | 6 cut(s) | 144, 662, 872, 914, 1060, 1226 |
| HpyCH4III | ACNGT | 2 cut(s) | 392, 475 |
| HpyCH4IV | ACGT | 3 cut(s) | 576, 954, 1212 |
| HpyCH4V | TGCA | 8 cut(s) | 340, 388, 574, 683, 728, 742, 937, 950 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 314, 413, 518, 614, 725, 734 |
| HpyF3I | CTNAG | 6 cut(s) | 176, 435, 443, 498, 1056, 1251 |
| HpySE526I | ACGT | 3 cut(s) | 576, 954, 1212 |
| Hsp92I | GRCGYC | 2 cut(s) | 327, 1212 |
| Kzo9I | GATC | 2 cut(s) | 766, 1134 |
| LguI | GCTCTTC | 2 cut(s) | 210, 315 |
| LmnI | GCTCC | 3 cut(s) | 358, 515, 691 |
| LweI | GCATC | 6 cut(s) | 243, 394, 561, 617, 827, 1149 |
| MaeI | CTAG | 2 cut(s) | 32, 425 |
| MaeII | ACGT | 3 cut(s) | 576, 954, 1212 |
| MaeIII | GTNAC | 1 cut(s) | 793 |
| MalI | GATC | 2 cut(s) | 768, 1136 |
| MboI | GATC | 2 cut(s) | 766, 1134 |
| MboII | GAAGA | 6 cut(s) | 45, 110, 197, 302, 983, 1106 |
| MfeI | CAATTG | 1 cut(s) | 252 |
| MhlI | GDGCHC | 6 cut(s) | 192, 205, 363, 544, 857, 1272 |
| MluCI | AATT | 7 cut(s) | 22, 252, 279, 729, 828, 845, 1015 |
| MlyI | GAGTC | 1 cut(s) | 874 |
| MmeI | TCCRAC | 1 cut(s) | 1015 |
| MroXI | GAANNNNTTC | 3 cut(s) | 102, 975, 1119 |
| MslI | CAYNNNNRTG | 3 cut(s) | 393, 416, 942 |
| MspA1I | CMGCKG | 1 cut(s) | 932 |
| MspI | CCGG | 3 cut(s) | 288, 833, 1220 |
| MspR9I | CCNGG | 1 cut(s) | 1125 |
| MunI | CAATTG | 1 cut(s) | 252 |
| MvaI | CCWGG | 1 cut(s) | 1125 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 314, 413, 518, 614, 725, 734 |
| NcoI | CCATGG | 2 cut(s) | 70, 612 |
| NdeII | GATC | 2 cut(s) | 766, 1134 |
| NlaIV | GGNNCC | 2 cut(s) | 83, 286 |
| NmeAIII | GCCGAG | 1 cut(s) | 547 |
| NmuCI | GTSAC | 1 cut(s) | 793 |
| NspI | RCATGY | 2 cut(s) | 680, 1025 |
| OliI | CACNNNNGTG | 1 cut(s) | 393 |
| PaeI | GCATGC | 1 cut(s) | 680 |
| PagI | TCATGA | 3 cut(s) | 400, 894, 1131 |
| PaqCI | CACCTGC | 1 cut(s) | 1079 |
| PciSI | GCTCTTC | 2 cut(s) | 210, 315 |
| PdmI | GAANNNNTTC | 3 cut(s) | 102, 975, 1119 |
| PfeI | GAWTC | 6 cut(s) | 4, 103, 180, 1115, 1120, 1128 |
| PfoI | TCCNGGA | 1 cut(s) | 1123 |
| PleI | GAGTC | 1 cut(s) | 873 |
| PpsI | GAGTC | 1 cut(s) | 873 |
| Psp6I | CCWGG | 1 cut(s) | 1123 |
| PspGI | CCWGG | 1 cut(s) | 1123 |
| PspN4I | GGNNCC | 2 cut(s) | 83, 286 |
| PspPI | GGNCC | 6 cut(s) | 82, 223, 274, 285, 620, 1052 |
| PstI | CTGCAG | 1 cut(s) | 685 |
| PvuII | CAGCTG | 1 cut(s) | 932 |
| RsaI | GTAC | 3 cut(s) | 248, 472, 887 |
| RsaNI | GTAC | 3 cut(s) | 247, 471, 886 |
| RseI | CAYNNNNRTG | 3 cut(s) | 393, 416, 942 |
| SapI | GCTCTTC | 2 cut(s) | 210, 315 |
| Sau3AI | GATC | 2 cut(s) | 766, 1134 |
| Sau96I | GGNCC | 6 cut(s) | 82, 223, 274, 285, 620, 1052 |
| SchI | GAGTC | 1 cut(s) | 874 |
| ScrFI | CCNGG | 1 cut(s) | 1125 |
| SduI | GDGCHC | 6 cut(s) | 192, 205, 363, 544, 857, 1272 |
| SfaNI | GCATC | 6 cut(s) | 243, 394, 561, 617, 827, 1149 |
| SfcI | CTRYAG | 1 cut(s) | 681 |
| SinI | GGWCC | 4 cut(s) | 82, 223, 285, 1052 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 393, 416, 942 |
| SmlI | CTYRAG | 1 cut(s) | 754 |
| SmoI | CTYRAG | 1 cut(s) | 754 |
| SphI | GCATGC | 1 cut(s) | 680 |
| Sse9I | AATT | 7 cut(s) | 22, 252, 279, 729, 828, 845, 1015 |
| SsiI | CCGC | 4 cut(s) | 414, 554, 1181, 1281 |
| SspI | AATATT | 1 cut(s) | 564 |
| SspMI | CTAG | 2 cut(s) | 32, 425 |
| StyD4I | CCNGG | 1 cut(s) | 1123 |
| StyI | CCWWGG | 3 cut(s) | 70, 612, 1245 |
| TaaI | ACNGT | 2 cut(s) | 392, 475 |
| TaiI | ACGT | 3 cut(s) | 579, 957, 1215 |
| TaqI | TCGA | 4 cut(s) | 14, 579, 805, 1118 |
| TasI | AATT | 7 cut(s) | 22, 252, 279, 729, 828, 845, 1015 |
| TfiI | GAWTC | 6 cut(s) | 4, 103, 180, 1115, 1120, 1128 |
| TscAI | CASTG | 1 cut(s) | 205 |
| TseFI | GTSAC | 1 cut(s) | 793 |
| Tsp45I | GTSAC | 1 cut(s) | 793 |
| TspDTI | ATGAA | 4 cut(s) | 17, 29, 177, 977 |
| TspGWI | ACGGA | 2 cut(s) | 108, 890 |
| TspRI | CASTG | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 4 cut(s) | 82, 223, 285, 1052 |
| XapI | RAATTY | 2 cut(s) | 845, 1015 |
| XceI | RCATGY | 2 cut(s) | 680, 1025 |
| XmnI | GAANNNNTTC | 3 cut(s) | 102, 975, 1119 |
| XspI | CTAG | 2 cut(s) | 32, 425 |
| ZraI | GACGTC | 1 cut(s) | 1213 |