Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 806 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 556 |
| AccII | CGCG | 1 cut(s) | 329 |
| AccIII | TCCGGA | 2 cut(s) | 430, 886 |
| AciI | CCGC | 4 cut(s) | 327, 329, 389, 521 |
| AclWI | GGATC | 4 cut(s) | 540, 553, 878, 891 |
| AcoI | YGGCCR | 1 cut(s) | 396 |
| AcsI | RAATTY | 1 cut(s) | 366 |
| AcuI | CTGAAG | 1 cut(s) | 782 |
| AcyI | GRCGYC | 1 cut(s) | 61 |
| AfeI | AGCGCT | 1 cut(s) | 144 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 556 |
| AgsI | TTSAA | 1 cut(s) | 37 |
| AjiI | CACGTC | 1 cut(s) | 595 |
| AluBI | AGCT | 6 cut(s) | 128, 446, 499, 563, 691, 963 |
| AluI | AGCT | 6 cut(s) | 128, 446, 499, 563, 691, 963 |
| Alw21I | GWGCWC | 1 cut(s) | 424 |
| Alw26I | GTCTC | 1 cut(s) | 68 |
| AlwI | GGATC | 4 cut(s) | 540, 553, 878, 891 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 983 |
| Ama87I | CYCGRG | 1 cut(s) | 843 |
| Aor13HI | TCCGGA | 2 cut(s) | 430, 886 |
| Aor51HI | AGCGCT | 1 cut(s) | 144 |
| AoxI | GGCC | 4 cut(s) | 73, 155, 377, 396 |
| ApeKI | GCWGC | 3 cut(s) | 145, 181, 869 |
| ApoI | RAATTY | 1 cut(s) | 366 |
| AspLEI | GCGC | 2 cut(s) | 145, 256 |
| AspS9I | GGNCC | 3 cut(s) | 377, 694, 951 |
| AsuC2I | CCSGG | 1 cut(s) | 768 |
| AsuNHI | GCTAGC | 1 cut(s) | 442 |
| AvaI | CYCGRG | 1 cut(s) | 843 |
| AvaII | GGWCC | 2 cut(s) | 694, 951 |
| BamHI | GGATCC | 2 cut(s) | 545, 883 |
| Bbv12I | GWGCWC | 1 cut(s) | 424 |
| BbvCI | CCTCAGC | 1 cut(s) | 474 |
| BbvI | GCAGC | 3 cut(s) | 132, 168, 856 |
| BccI | CCATC | 6 cut(s) | 194, 232, 332, 388, 663, 1007 |
| BceAI | ACGGC | 1 cut(s) | 142 |
| BcnI | CCSGG | 1 cut(s) | 768 |
| BcoDI | GTCTC | 1 cut(s) | 68 |
| BfaI | CTAG | 2 cut(s) | 443, 873 |
| BfmI | CTRYAG | 2 cut(s) | 166, 295 |
| BfoI | RGCGCY | 1 cut(s) | 146 |
| BglII | AGATCT | 1 cut(s) | 243 |
| BisI | GCNGC | 5 cut(s) | 146, 182, 327, 390, 870 |
| BlsI | GCNGC | 5 cut(s) | 147, 183, 328, 391, 871 |
| Bme1390I | CCNGG | 1 cut(s) | 768 |
| Bme18I | GGWCC | 2 cut(s) | 694, 951 |
| BmeT110I | CYCGRG | 1 cut(s) | 843 |
| BmgBI | CACGTC | 1 cut(s) | 595 |
| BmgT120I | GGNCC | 3 cut(s) | 377, 694, 951 |
| BmiI | GGNNCC | 6 cut(s) | 43, 435, 547, 696, 885, 952 |
| BmrFI | CCNGG | 1 cut(s) | 768 |
| BmsI | GCATC | 5 cut(s) | 79, 168, 453, 644, 928 |
| BmtI | GCTAGC | 1 cut(s) | 446 |
| Bpu10I | CCTNAGC | 3 cut(s) | 474, 987, 993 |
| BpuEI | CTTGAG | 1 cut(s) | 50 |
| BpuMI | CCSGG | 1 cut(s) | 768 |
| Bsa29I | ATCGAT | 1 cut(s) | 100 |
| BsaBI | GATNNNNATC | 3 cut(s) | 242, 266, 806 |
| BsaHI | GRCGYC | 1 cut(s) | 61 |
| BsaJI | CCNNGG | 5 cut(s) | 158, 327, 767, 844, 969 |
| BsaWI | WCCGGW | 3 cut(s) | 382, 430, 886 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 556 |
| Bse118I | RCCGGY | 1 cut(s) | 398 |
| Bse1I | ACTGG | 1 cut(s) | 437 |
| Bse3DI | GCAATG | 1 cut(s) | 45 |
| Bse8I | GATNNNNATC | 3 cut(s) | 242, 266, 806 |
| BseAI | TCCGGA | 2 cut(s) | 430, 886 |
| BseCI | ATCGAT | 1 cut(s) | 100 |
| BseDI | CCNNGG | 5 cut(s) | 158, 327, 767, 844, 969 |
| BseGI | GGATG | 1 cut(s) | 674 |
| BseJI | GATNNNNATC | 3 cut(s) | 242, 266, 806 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 556 |
| BseMI | GCAATG | 1 cut(s) | 45 |
| BseMII | CTCAG | 2 cut(s) | 249, 465 |
| BseNI | ACTGG | 1 cut(s) | 437 |
| BseXI | GCAGC | 3 cut(s) | 132, 168, 856 |
| Bsh1236I | CGCG | 1 cut(s) | 329 |
| BshFI | GGCC | 4 cut(s) | 75, 157, 379, 398 |
| BshVI | ATCGAT | 1 cut(s) | 100 |
| BsiHKAI | GWGCWC | 1 cut(s) | 424 |
| BsiHKCI | CYCGRG | 1 cut(s) | 843 |
| BsiSI | CCGG | 5 cut(s) | 383, 399, 431, 767, 887 |
| BslFI | GGGAC | 2 cut(s) | 680, 825 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 556 |
| BsmAI | GTCTC | 1 cut(s) | 68 |
| BsmBI | CGTCTC | 1 cut(s) | 68 |
| BsmFI | GGGAC | 2 cut(s) | 680, 825 |
| BsnI | GGCC | 4 cut(s) | 75, 157, 379, 398 |
| BsoBI | CYCGRG | 1 cut(s) | 843 |
| Bsp1286I | GDGCHC | 1 cut(s) | 424 |
| Bsp13I | TCCGGA | 2 cut(s) | 430, 886 |
| Bsp143I | GATC | 5 cut(s) | 54, 97, 243, 545, 883 |
| BspACI | CCGC | 4 cut(s) | 327, 329, 389, 521 |
| BspANI | GGCC | 4 cut(s) | 75, 157, 379, 398 |
| BspCNI | CTCAG | 2 cut(s) | 250, 466 |
| BspDI | ATCGAT | 1 cut(s) | 100 |
| BspEI | TCCGGA | 2 cut(s) | 430, 886 |
| BspFNI | CGCG | 1 cut(s) | 329 |
| BspHI | TCATGA | 2 cut(s) | 85, 121 |
| BspLI | GGNNCC | 6 cut(s) | 43, 435, 547, 696, 885, 952 |
| BspMAI | CTGCAG | 1 cut(s) | 299 |
| BspOI | GCTAGC | 1 cut(s) | 446 |
| BspPI | GGATC | 4 cut(s) | 540, 553, 878, 891 |
| BspQI | GCTCTTC | 1 cut(s) | 914 |
| BsrDI | GCAATG | 1 cut(s) | 45 |
| BsrFI | RCCGGY | 1 cut(s) | 398 |
| BsrI | ACTGG | 1 cut(s) | 437 |
| BssAI | RCCGGY | 1 cut(s) | 398 |
| BssECI | CCNNGG | 5 cut(s) | 158, 327, 767, 844, 969 |
| BssMI | GATC | 5 cut(s) | 54, 97, 243, 545, 883 |
| BssNI | GRCGYC | 1 cut(s) | 61 |
| BssT1I | CCWWGG | 1 cut(s) | 969 |
| Bst6I | CTCTTC | 1 cut(s) | 914 |
| BstACI | GRCGYC | 1 cut(s) | 61 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 983 |
| BstC8I | GCNNGC | 1 cut(s) | 444 |
| BstDEI | CTNAG | 6 cut(s) | 258, 474, 609, 708, 987, 993 |
| BstDSI | CCRYGG | 2 cut(s) | 158, 327 |
| BstF5I | GGATG | 1 cut(s) | 674 |
| BstFNI | CGCG | 1 cut(s) | 329 |
| BstH2I | RGCGCY | 1 cut(s) | 146 |
| BstHHI | GCGC | 2 cut(s) | 145, 256 |
| BstKTI | GATC | 5 cut(s) | 57, 100, 246, 548, 886 |
| BstMAI | GTCTC | 1 cut(s) | 68 |
| BstMBI | GATC | 5 cut(s) | 54, 97, 243, 545, 883 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 154, 395, 505, 569, 983 |
| BstSCI | CCNGG | 1 cut(s) | 766 |
| BstSFI | CTRYAG | 2 cut(s) | 166, 295 |
| BstUI | CGCG | 1 cut(s) | 329 |
| BstV1I | GCAGC | 3 cut(s) | 132, 168, 856 |
| BstX2I | RGATCY | 3 cut(s) | 243, 545, 883 |
| BstYI | RGATCY | 3 cut(s) | 243, 545, 883 |
| Bsu15I | ATCGAT | 1 cut(s) | 100 |
| BsuRI | GGCC | 4 cut(s) | 75, 157, 379, 398 |
| BsuTUI | ATCGAT | 1 cut(s) | 100 |
| BtgI | CCRYGG | 2 cut(s) | 158, 327 |
| BtgZI | GCGATG | 1 cut(s) | 407 |
| BtrI | CACGTC | 1 cut(s) | 595 |
| BtsCI | GGATG | 1 cut(s) | 674 |
| BtsIMutI | CAGTG | 1 cut(s) | 444 |
| Cac8I | GCNNGC | 1 cut(s) | 444 |
| CaiI | CAGNNNCTG | 1 cut(s) | 983 |
| CciI | TCATGA | 2 cut(s) | 85, 121 |
| CfoI | GCGC | 2 cut(s) | 145, 256 |
| Cfr10I | RCCGGY | 1 cut(s) | 398 |
| Cfr13I | GGNCC | 3 cut(s) | 377, 694, 951 |
| Cfr42I | CCGCGG | 1 cut(s) | 330 |
| ClaI | ATCGAT | 1 cut(s) | 100 |
| CseI | GACGC | 2 cut(s) | 50, 567 |
| CviAII | CATG | 7 cut(s) | 86, 122, 149, 320, 542, 575, 602 |
| DdeI | CTNAG | 6 cut(s) | 258, 474, 609, 708, 987, 993 |
| DpnI | GATC | 5 cut(s) | 56, 99, 245, 547, 885 |
| DpnII | GATC | 5 cut(s) | 54, 97, 243, 545, 883 |
| EaeI | YGGCCR | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 914 |
| EarI | CTCTTC | 1 cut(s) | 914 |
| Eco130I | CCWWGG | 1 cut(s) | 969 |
| Eco47I | GGWCC | 2 cut(s) | 694, 951 |
| Eco47III | AGCGCT | 1 cut(s) | 144 |
| Eco57I | CTGAAG | 1 cut(s) | 782 |
| Eco88I | CYCGRG | 1 cut(s) | 843 |
| EcoT14I | CCWWGG | 1 cut(s) | 969 |
| EcoT22I | ATGCAT | 1 cut(s) | 1055 |
| ErhI | CCWWGG | 1 cut(s) | 969 |
| Esp3I | CGTCTC | 1 cut(s) | 68 |
| FaeI | CATG | 7 cut(s) | 89, 125, 152, 323, 545, 578, 605 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 740, 772 |
| FaqI | GGGAC | 2 cut(s) | 680, 825 |
| FatI | CATG | 7 cut(s) | 85, 121, 148, 319, 541, 574, 601 |
| FauI | CCCGC | 1 cut(s) | 322 |
| Fnu4HI | GCNGC | 5 cut(s) | 146, 182, 327, 390, 870 |
| FokI | GGATG | 1 cut(s) | 681 |
| Fsp4HI | GCNGC | 5 cut(s) | 146, 182, 327, 390, 870 |
| FspBI | CTAG | 2 cut(s) | 443, 873 |
| GlaI | GCGC | 2 cut(s) | 144, 255 |
| GluI | GCNGC | 5 cut(s) | 146, 182, 327, 390, 870 |
| HaeII | RGCGCY | 1 cut(s) | 146 |
| HaeIII | GGCC | 4 cut(s) | 75, 157, 379, 398 |
| HapII | CCGG | 5 cut(s) | 383, 399, 431, 767, 887 |
| HgaI | GACGC | 2 cut(s) | 50, 567 |
| HhaI | GCGC | 2 cut(s) | 145, 256 |
| Hin1I | GRCGYC | 1 cut(s) | 61 |
| Hin1II | CATG | 7 cut(s) | 89, 125, 152, 323, 545, 578, 605 |
| Hin6I | GCGC | 2 cut(s) | 143, 254 |
| HinP1I | GCGC | 2 cut(s) | 143, 254 |
| HinfI | GANTC | 5 cut(s) | 23, 102, 291, 932, 1036 |
| HpaII | CCGG | 5 cut(s) | 383, 399, 431, 767, 887 |
| Hpy188I | TCNGA | 6 cut(s) | 22, 372, 762, 937, 955, 1041 |
| Hpy188III | TCNNGA | 5 cut(s) | 86, 122, 247, 431, 887 |
| HpyAV | CCTTC | 5 cut(s) | 27, 147, 352, 859, 950 |
| HpyCH4IV | ACGT | 1 cut(s) | 594 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 154, 395, 505, 569, 983 |
| HpyF3I | CTNAG | 6 cut(s) | 258, 474, 609, 708, 987, 993 |
| HpySE526I | ACGT | 1 cut(s) | 594 |
| Hsp92I | GRCGYC | 1 cut(s) | 61 |
| Hsp92II | CATG | 7 cut(s) | 89, 125, 152, 323, 545, 578, 605 |
| HspAI | GCGC | 2 cut(s) | 143, 254 |
| Kpn2I | TCCGGA | 2 cut(s) | 430, 886 |
| KspI | CCGCGG | 1 cut(s) | 330 |
| Kzo9I | GATC | 5 cut(s) | 54, 97, 243, 545, 883 |
| LguI | GCTCTTC | 1 cut(s) | 914 |
| LmnI | GCTCC | 3 cut(s) | 457, 496, 560 |
| Lsp1109I | GCAGC | 3 cut(s) | 132, 168, 856 |
| LweI | GCATC | 5 cut(s) | 79, 168, 453, 644, 928 |
| MaeI | CTAG | 2 cut(s) | 443, 873 |
| MaeII | ACGT | 1 cut(s) | 594 |
| MaeIII | GTNAC | 5 cut(s) | 451, 579, 590, 780, 979 |
| MalI | GATC | 5 cut(s) | 56, 99, 245, 547, 885 |
| MboI | GATC | 5 cut(s) | 54, 97, 243, 545, 883 |
| MboII | GAAGA | 6 cut(s) | 107, 697, 760, 838, 931, 1022 |
| MflI | RGATCY | 3 cut(s) | 243, 545, 883 |
| MhlI | GDGCHC | 1 cut(s) | 424 |
| MluCI | AATT | 5 cut(s) | 113, 366, 679, 793, 1044 |
| MlyI | GAGTC | 1 cut(s) | 926 |
| MmeI | TCCRAC | 1 cut(s) | 390 |
| MnlI | CCTC | 9 cut(s) | 24, 86, 213, 438, 469, 524, 839, 894, 1021 |
| Mph1103I | ATGCAT | 1 cut(s) | 1055 |
| MroI | TCCGGA | 2 cut(s) | 430, 886 |
| MseI | TTAA | 4 cut(s) | 285, 675, 1047, 1057 |
| MspA1I | CMGCKG | 1 cut(s) | 329 |
| MspI | CCGG | 5 cut(s) | 383, 399, 431, 767, 887 |
| MspR9I | CCNGG | 1 cut(s) | 768 |
| MvnI | CGCG | 1 cut(s) | 329 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 154, 395, 505, 569, 983 |
| NciI | CCSGG | 1 cut(s) | 768 |
| NdeII | GATC | 5 cut(s) | 54, 97, 243, 545, 883 |
| NheI | GCTAGC | 1 cut(s) | 442 |
| NlaIII | CATG | 7 cut(s) | 89, 125, 152, 323, 545, 578, 605 |
| NlaIV | GGNNCC | 6 cut(s) | 43, 435, 547, 696, 885, 952 |
| NmuCI | GTSAC | 3 cut(s) | 451, 579, 590 |
| NsiI | ATGCAT | 1 cut(s) | 1055 |
| PagI | TCATGA | 2 cut(s) | 85, 121 |
| PciSI | GCTCTTC | 1 cut(s) | 914 |
| PfeI | GAWTC | 4 cut(s) | 23, 102, 291, 1036 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 556 |
| PkrI | GCNGC | 5 cut(s) | 147, 183, 328, 391, 871 |
| PleI | GAGTC | 1 cut(s) | 926 |
| PpsI | GAGTC | 1 cut(s) | 926 |
| PsiI | TTATAA | 1 cut(s) | 806 |
| PspN4I | GGNNCC | 6 cut(s) | 43, 435, 547, 696, 885, 952 |
| PspPI | GGNCC | 3 cut(s) | 377, 694, 951 |
| PstI | CTGCAG | 1 cut(s) | 299 |
| PstNI | CAGNNNCTG | 1 cut(s) | 983 |
| PsuI | RGATCY | 3 cut(s) | 243, 545, 883 |
| SacII | CCGCGG | 1 cut(s) | 330 |
| SapI | GCTCTTC | 1 cut(s) | 914 |
| SaqAI | TTAA | 4 cut(s) | 285, 675, 1047, 1057 |
| SatI | GCNGC | 5 cut(s) | 146, 182, 327, 390, 870 |
| Sau3AI | GATC | 5 cut(s) | 54, 97, 243, 545, 883 |
| Sau96I | GGNCC | 3 cut(s) | 377, 694, 951 |
| SchI | GAGTC | 1 cut(s) | 926 |
| ScrFI | CCNGG | 1 cut(s) | 768 |
| SduI | GDGCHC | 1 cut(s) | 424 |
| SfaNI | GCATC | 5 cut(s) | 79, 168, 453, 644, 928 |
| SfcI | CTRYAG | 2 cut(s) | 166, 295 |
| Sfr303I | CCGCGG | 1 cut(s) | 330 |
| SgrBI | CCGCGG | 1 cut(s) | 330 |
| SinI | GGWCC | 2 cut(s) | 694, 951 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| Sse9I | AATT | 5 cut(s) | 113, 366, 679, 793, 1044 |
| SsiI | CCGC | 4 cut(s) | 327, 329, 389, 521 |
| SspMI | CTAG | 2 cut(s) | 443, 873 |
| StyD4I | CCNGG | 1 cut(s) | 766 |
| StyI | CCWWGG | 1 cut(s) | 969 |
| TaiI | ACGT | 1 cut(s) | 597 |
| TaqI | TCGA | 1 cut(s) | 100 |
| TasI | AATT | 5 cut(s) | 113, 366, 679, 793, 1044 |
| TauI | GCSGC | 2 cut(s) | 329, 392 |
| TfiI | GAWTC | 4 cut(s) | 23, 102, 291, 1036 |
| Tru1I | TTAA | 4 cut(s) | 285, 675, 1047, 1057 |
| Tru9I | TTAA | 4 cut(s) | 285, 675, 1047, 1057 |
| TscAI | CASTG | 1 cut(s) | 444 |
| TseFI | GTSAC | 3 cut(s) | 451, 579, 590 |
| TseI | GCWGC | 3 cut(s) | 145, 181, 869 |
| Tsp45I | GTSAC | 3 cut(s) | 451, 579, 590 |
| TspDTI | ATGAA | 3 cut(s) | 74, 138, 336 |
| TspGWI | ACGGA | 2 cut(s) | 439, 470 |
| TspRI | CASTG | 1 cut(s) | 444 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 556 |
| VpaK11BI | GGWCC | 2 cut(s) | 694, 951 |
| XapI | RAATTY | 1 cut(s) | 366 |
| XspI | CTAG | 2 cut(s) | 443, 873 |
| Zsp2I | ATGCAT | 1 cut(s) | 1055 |