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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 39 |
| AciI | CCGC | 2 cut(s) | 39, 758 |
| AclWI | GGATC | 2 cut(s) | 995, 1008 |
| AcoI | YGGCCR | 1 cut(s) | 959 |
| AcsI | RAATTY | 1 cut(s) | 888 |
| AcuI | CTGAAG | 2 cut(s) | 268, 556 |
| AdeI | CACNNNGTG | 1 cut(s) | 623 |
| AfaI | GTAC | 3 cut(s) | 100, 500, 1038 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 377, 931, 997, 1032, 1075, 1089 |
| AflIII | ACRYGT | 1 cut(s) | 775 |
| AgsI | TTSAA | 6 cut(s) | 331, 509, 560, 887, 1018, 1273 |
| AjnI | CCWGG | 2 cut(s) | 370, 785 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 237, 269, 300, 332 |
| Alw26I | GTCTC | 6 cut(s) | 150, 422, 759, 952, 1051, 1164 |
| AlwI | GGATC | 2 cut(s) | 995, 1008 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 262, 1231 |
| AoxI | GGCC | 5 cut(s) | 424, 639, 755, 959, 1091 |
| ApeKI | GCWGC | 5 cut(s) | 119, 626, 812, 1228, 1285 |
| ApoI | RAATTY | 1 cut(s) | 888 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 359, 391 |
| AspS9I | GGNCC | 4 cut(s) | 597, 656, 755, 1078 |
| AsuC2I | CCSGG | 1 cut(s) | 1090 |
| AsuHPI | GGTGA | 1 cut(s) | 1154 |
| AsuNHI | GCTAGC | 1 cut(s) | 146 |
| AvaII | GGWCC | 3 cut(s) | 597, 656, 1078 |
| BamHI | GGATCC | 1 cut(s) | 1000 |
| BanII | GRGCYC | 1 cut(s) | 958 |
| BauI | CACGAG | 1 cut(s) | 995 |
| BbsI | GAAGAC | 1 cut(s) | 319 |
| BbvCI | CCTCAGC | 1 cut(s) | 444 |
| BbvI | GCAGC | 4 cut(s) | 131, 638, 799, 1240 |
| BccI | CCATC | 6 cut(s) | 220, 407, 480, 904, 1034, 1160 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 1274 |
| BciT130I | CCWGG | 2 cut(s) | 372, 787 |
| BclI | TGATCA | 2 cut(s) | 514, 1207 |
| BcnI | CCSGG | 1 cut(s) | 1090 |
| BcoDI | GTCTC | 6 cut(s) | 150, 422, 759, 952, 1051, 1164 |
| BfaI | CTAG | 1 cut(s) | 147 |
| BglII | AGATCT | 1 cut(s) | 1135 |
| BisI | GCNGC | 6 cut(s) | 120, 627, 758, 813, 1229, 1286 |
| BlpI | GCTNAGC | 1 cut(s) | 723 |
| BlsI | GCNGC | 6 cut(s) | 121, 628, 759, 814, 1230, 1287 |
| Bme1390I | CCNGG | 3 cut(s) | 372, 787, 1090 |
| Bme18I | GGWCC | 3 cut(s) | 597, 656, 1078 |
| BmgT120I | GGNCC | 4 cut(s) | 597, 656, 755, 1078 |
| BmiI | GGNNCC | 4 cut(s) | 52, 1002, 1079, 1080 |
| BmrFI | CCNGG | 3 cut(s) | 372, 787, 1090 |
| BmrI | ACTGGG | 2 cut(s) | 285, 1287 |
| BmsI | GCATC | 2 cut(s) | 106, 1263 |
| BmtI | GCTAGC | 1 cut(s) | 150 |
| BmuI | ACTGGG | 2 cut(s) | 285, 1287 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1238 |
| BpiI | GAAGAC | 1 cut(s) | 319 |
| Bpu10I | CCTNAGC | 1 cut(s) | 444 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 723 |
| BpuMI | CCSGG | 1 cut(s) | 1090 |
| Bsa29I | ATCGAT | 1 cut(s) | 908 |
| BsaI | GGTCTC | 2 cut(s) | 150, 422 |
| BsaJI | CCNNGG | 5 cut(s) | 371, 421, 547, 593, 786 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 377, 931, 997, 1032, 1075, 1089 |
| Bse1I | ACTGG | 5 cut(s) | 102, 235, 280, 665, 1282 |
| Bse3DI | GCAATG | 1 cut(s) | 1127 |
| BseBI | CCWGG | 2 cut(s) | 372, 787 |
| BseCI | ATCGAT | 1 cut(s) | 908 |
| BseDI | CCNNGG | 5 cut(s) | 371, 421, 547, 593, 786 |
| BseGI | GGATG | 4 cut(s) | 472, 689, 696, 1108 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 377, 931, 997, 1032, 1075, 1089 |
| BseMI | GCAATG | 1 cut(s) | 1127 |
| BseMII | CTCAG | 2 cut(s) | 46, 435 |
| BseNI | ACTGG | 5 cut(s) | 102, 235, 280, 665, 1282 |
| BseXI | GCAGC | 4 cut(s) | 131, 638, 799, 1240 |
| BseYI | CCCAGC | 1 cut(s) | 752 |
| BsgI | GTGCAG | 1 cut(s) | 645 |
| Bsh1236I | CGCG | 1 cut(s) | 39 |
| BshFI | GGCC | 5 cut(s) | 426, 641, 757, 961, 1093 |
| BshVI | ATCGAT | 1 cut(s) | 908 |
| BsiSI | CCGG | 1 cut(s) | 1090 |
| BslFI | GGGAC | 2 cut(s) | 474, 1091 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 377, 931, 997, 1032, 1075, 1089 |
| BsmAI | GTCTC | 6 cut(s) | 150, 422, 759, 952, 1051, 1164 |
| BsmFI | GGGAC | 2 cut(s) | 474, 1091 |
| BsmI | GAATGC | 1 cut(s) | 297 |
| BsnI | GGCC | 5 cut(s) | 426, 641, 757, 961, 1093 |
| Bso31I | GGTCTC | 2 cut(s) | 150, 422 |
| Bsp1286I | GDGCHC | 1 cut(s) | 958 |
| Bsp143I | GATC | 5 cut(s) | 514, 905, 1000, 1135, 1207 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 723 |
| Bsp19I | CCATGG | 1 cut(s) | 593 |
| BspACI | CCGC | 2 cut(s) | 39, 758 |
| BspANI | GGCC | 5 cut(s) | 426, 641, 757, 961, 1093 |
| BspCNI | CTCAG | 2 cut(s) | 45, 436 |
| BspDI | ATCGAT | 1 cut(s) | 908 |
| BspFNI | CGCG | 1 cut(s) | 39 |
| BspHI | TCATGA | 1 cut(s) | 828 |
| BspLI | GGNNCC | 4 cut(s) | 52, 1002, 1079, 1080 |
| BspOI | GCTAGC | 1 cut(s) | 150 |
| BspPI | GGATC | 2 cut(s) | 995, 1008 |
| BspTNI | GGTCTC | 2 cut(s) | 150, 422 |
| BsrDI | GCAATG | 1 cut(s) | 1127 |
| BsrI | ACTGG | 5 cut(s) | 102, 235, 280, 665, 1282 |
| BssECI | CCNNGG | 5 cut(s) | 371, 421, 547, 593, 786 |
| BssMI | GATC | 5 cut(s) | 514, 905, 1000, 1135, 1207 |
| BssSI | CACGAG | 1 cut(s) | 995 |
| BssT1I | CCWWGG | 2 cut(s) | 421, 593 |
| Bst2BI | CACGAG | 1 cut(s) | 995 |
| Bst2UI | CCWGG | 2 cut(s) | 372, 787 |
| Bst4CI | ACNGT | 3 cut(s) | 388, 522, 1053 |
| Bst6I | CTCTTC | 1 cut(s) | 575 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 623 |
| BstC8I | GCNNGC | 1 cut(s) | 148 |
| BstDEI | CTNAG | 4 cut(s) | 32, 444, 723, 1248 |
| BstDSI | CCRYGG | 2 cut(s) | 547, 593 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 4 cut(s) | 472, 689, 696, 1108 |
| BstFNI | CGCG | 1 cut(s) | 39 |
| BstKTI | GATC | 5 cut(s) | 517, 908, 1003, 1138, 1210 |
| BstMAI | GTCTC | 6 cut(s) | 150, 422, 759, 952, 1051, 1164 |
| BstMBI | GATC | 5 cut(s) | 514, 905, 1000, 1135, 1207 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 623 |
| BstNI | CCWGG | 2 cut(s) | 372, 787 |
| BstNSI | RCATGY | 1 cut(s) | 779 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1238 |
| BstSCI | CCNGG | 3 cut(s) | 370, 785, 1088 |
| BstUI | CGCG | 1 cut(s) | 39 |
| BstV1I | GCAGC | 4 cut(s) | 131, 638, 799, 1240 |
| BstV2I | GAAGAC | 1 cut(s) | 319 |
| BstX2I | RGATCY | 2 cut(s) | 1000, 1135 |
| BstYI | RGATCY | 2 cut(s) | 1000, 1135 |
| Bsu15I | ATCGAT | 1 cut(s) | 908 |
| BsuRI | GGCC | 5 cut(s) | 426, 641, 757, 961, 1093 |
| BsuTUI | ATCGAT | 1 cut(s) | 908 |
| BtgI | CCRYGG | 2 cut(s) | 547, 593 |
| BtgZI | GCGATG | 1 cut(s) | 870 |
| BtsCI | GGATG | 4 cut(s) | 472, 689, 696, 1108 |
| BtsI | GCAGTG | 1 cut(s) | 717 |
| BtsIMutI | CAGTG | 1 cut(s) | 717 |
| Cac8I | GCNNGC | 1 cut(s) | 148 |
| CaiI | CAGNNNCTG | 2 cut(s) | 262, 1231 |
| CciI | TCATGA | 1 cut(s) | 828 |
| Cfr13I | GGNCC | 4 cut(s) | 597, 656, 755, 1078 |
| ClaI | ATCGAT | 1 cut(s) | 908 |
| CseI | GACGC | 2 cut(s) | 45, 1200 |
| Csp6I | GTAC | 3 cut(s) | 99, 499, 1037 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 30 |
| CviAII | CATG | 5 cut(s) | 594, 776, 829, 1166, 1214 |
| CviQI | GTAC | 3 cut(s) | 99, 499, 1037 |
| DdeI | CTNAG | 4 cut(s) | 32, 444, 723, 1248 |
| DpnI | GATC | 5 cut(s) | 516, 907, 1002, 1137, 1209 |
| DpnII | GATC | 5 cut(s) | 514, 905, 1000, 1135, 1207 |
| DraIII | CACNNNGTG | 1 cut(s) | 623 |
| EaeI | YGGCCR | 1 cut(s) | 959 |
| Eam1104I | CTCTTC | 1 cut(s) | 575 |
| EarI | CTCTTC | 1 cut(s) | 575 |
| Eco130I | CCWWGG | 2 cut(s) | 421, 593 |
| Eco24I | GRGCYC | 1 cut(s) | 958 |
| Eco31I | GGTCTC | 2 cut(s) | 150, 422 |
| Eco32I | GATATC | 1 cut(s) | 137 |
| Eco47I | GGWCC | 3 cut(s) | 597, 656, 1078 |
| Eco57I | CTGAAG | 2 cut(s) | 268, 556 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 375 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1078 |
| EcoRII | CCWGG | 2 cut(s) | 370, 785 |
| EcoRV | GATATC | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 2 cut(s) | 421, 593 |
| EcoT38I | GRGCYC | 1 cut(s) | 958 |
| ErhI | CCWWGG | 2 cut(s) | 421, 593 |
| FaeI | CATG | 5 cut(s) | 597, 779, 832, 1169, 1217 |
| FaqI | GGGAC | 2 cut(s) | 474, 1091 |
| FatI | CATG | 5 cut(s) | 593, 775, 828, 1165, 1213 |
| FbaI | TGATCA | 2 cut(s) | 514, 1207 |
| Fnu4HI | GCNGC | 6 cut(s) | 120, 627, 758, 813, 1229, 1286 |
| FokI | GGATG | 4 cut(s) | 459, 676, 683, 1115 |
| FriOI | GRGCYC | 1 cut(s) | 958 |
| Fsp4HI | GCNGC | 6 cut(s) | 120, 627, 758, 813, 1229, 1286 |
| FspBI | CTAG | 1 cut(s) | 147 |
| GluI | GCNGC | 6 cut(s) | 120, 627, 758, 813, 1229, 1286 |
| GsaI | CCCAGC | 1 cut(s) | 756 |
| HaeIII | GGCC | 5 cut(s) | 426, 641, 757, 961, 1093 |
| HapII | CCGG | 1 cut(s) | 1090 |
| HgaI | GACGC | 2 cut(s) | 45, 1200 |
| Hin1II | CATG | 5 cut(s) | 597, 779, 832, 1169, 1217 |
| HincII | GTYRAC | 2 cut(s) | 451, 1223 |
| HindII | GTYRAC | 2 cut(s) | 451, 1223 |
| HindIII | AAGCTT | 4 cut(s) | 400, 488, 725, 983 |
| HinfI | GANTC | 3 cut(s) | 77, 553, 707 |
| HpaII | CCGG | 1 cut(s) | 1090 |
| HphI | GGTGA | 1 cut(s) | 1154 |
| Hpy166II | GTNNAC | 5 cut(s) | 451, 862, 1039, 1223, 1243 |
| Hpy188I | TCNGA | 8 cut(s) | 35, 193, 217, 287, 575, 712, 733, 1259 |
| Hpy188III | TCNNGA | 4 cut(s) | 257, 557, 659, 829 |
| Hpy8I | GTNNAC | 5 cut(s) | 451, 862, 1039, 1223, 1243 |
| Hpy99I | CGWCG | 1 cut(s) | 1296 |
| HpyAV | CCTTC | 4 cut(s) | 302, 570, 1001, 1246 |
| HpyCH4III | ACNGT | 3 cut(s) | 388, 522, 1053 |
| HpyCH4IV | ACGT | 2 cut(s) | 800, 1291 |
| HpyCH4V | TGCA | 7 cut(s) | 57, 119, 272, 504, 617, 626, 1132 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 623 |
| HpyF3I | CTNAG | 4 cut(s) | 32, 444, 723, 1248 |
| HpySE526I | ACGT | 2 cut(s) | 800, 1291 |
| Hsp92II | CATG | 5 cut(s) | 597, 779, 832, 1169, 1217 |
| KflI | GGGWCCC | 1 cut(s) | 1078 |
| Ksp22I | TGATCA | 2 cut(s) | 514, 1207 |
| Kzo9I | GATC | 5 cut(s) | 514, 905, 1000, 1135, 1207 |
| LmnI | GCTCC | 3 cut(s) | 246, 259, 471 |
| Lsp1109I | GCAGC | 4 cut(s) | 131, 638, 799, 1240 |
| LweI | GCATC | 2 cut(s) | 106, 1263 |
| MaeI | CTAG | 1 cut(s) | 147 |
| MaeII | ACGT | 2 cut(s) | 800, 1291 |
| MalI | GATC | 5 cut(s) | 516, 907, 1002, 1137, 1209 |
| MboI | GATC | 5 cut(s) | 514, 905, 1000, 1135, 1207 |
| MboII | GAAGA | 6 cut(s) | 319, 521, 562, 912, 915, 1210 |
| MflI | RGATCY | 2 cut(s) | 1000, 1135 |
| MhlI | GDGCHC | 1 cut(s) | 958 |
| MluCI | AATT | 5 cut(s) | 245, 612, 888, 1013, 1018 |
| MlyI | GAGTC | 2 cut(s) | 71, 562 |
| MmeI | TCCRAC | 2 cut(s) | 717, 775 |
| MseI | TTAA | 7 cut(s) | 396, 404, 609, 684, 968, 1071, 1140 |
| MspA1I | CMGCKG | 1 cut(s) | 1231 |
| MspI | CCGG | 1 cut(s) | 1090 |
| MspR9I | CCNGG | 3 cut(s) | 372, 787, 1090 |
| Mva1269I | GAATGC | 1 cut(s) | 297 |
| MvaI | CCWGG | 2 cut(s) | 372, 787 |
| MvnI | CGCG | 1 cut(s) | 39 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 623 |
| NciI | CCSGG | 1 cut(s) | 1090 |
| NcoI | CCATGG | 1 cut(s) | 593 |
| NdeII | GATC | 5 cut(s) | 514, 905, 1000, 1135, 1207 |
| NheI | GCTAGC | 1 cut(s) | 146 |
| NlaIII | CATG | 5 cut(s) | 597, 779, 832, 1169, 1217 |
| NlaIV | GGNNCC | 4 cut(s) | 52, 1002, 1079, 1080 |
| NmeAIII | GCCGAG | 1 cut(s) | 937 |
| NspI | RCATGY | 1 cut(s) | 779 |
| PagI | TCATGA | 1 cut(s) | 828 |
| PciI | ACATGT | 1 cut(s) | 775 |
| PctI | GAATGC | 1 cut(s) | 297 |
| PfeI | GAWTC | 1 cut(s) | 707 |
| PkrI | GCNGC | 6 cut(s) | 121, 628, 759, 814, 1230, 1287 |
| PleI | GAGTC | 2 cut(s) | 71, 561 |
| PpsI | GAGTC | 2 cut(s) | 71, 561 |
| PpuMI | RGGWCCY | 1 cut(s) | 1078 |
| PscI | ACATGT | 1 cut(s) | 775 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1238 |
| Psp5II | RGGWCCY | 1 cut(s) | 1078 |
| Psp6I | CCWGG | 2 cut(s) | 370, 785 |
| PspFI | CCCAGC | 1 cut(s) | 752 |
| PspGI | CCWGG | 2 cut(s) | 370, 785 |
| PspN4I | GGNNCC | 4 cut(s) | 52, 1002, 1079, 1080 |
| PspPI | GGNCC | 4 cut(s) | 597, 656, 755, 1078 |
| PspPPI | RGGWCCY | 1 cut(s) | 1078 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1101, 1133 |
| PstNI | CAGNNNCTG | 2 cut(s) | 262, 1231 |
| PsuI | RGATCY | 2 cut(s) | 1000, 1135 |
| PvuII | CAGCTG | 1 cut(s) | 1231 |
| RsaI | GTAC | 3 cut(s) | 100, 500, 1038 |
| RsaNI | GTAC | 3 cut(s) | 99, 499, 1037 |
| SaqAI | TTAA | 7 cut(s) | 396, 404, 609, 684, 968, 1071, 1140 |
| SatI | GCNGC | 6 cut(s) | 120, 627, 758, 813, 1229, 1286 |
| Sau3AI | GATC | 5 cut(s) | 514, 905, 1000, 1135, 1207 |
| Sau96I | GGNCC | 4 cut(s) | 597, 656, 755, 1078 |
| SchI | GAGTC | 2 cut(s) | 71, 562 |
| ScrFI | CCNGG | 3 cut(s) | 372, 787, 1090 |
| SduI | GDGCHC | 1 cut(s) | 958 |
| SfaNI | GCATC | 2 cut(s) | 106, 1263 |
| SinI | GGWCC | 3 cut(s) | 597, 656, 1078 |
| Sse9I | AATT | 5 cut(s) | 245, 612, 888, 1013, 1018 |
| SsiI | CCGC | 2 cut(s) | 39, 758 |
| SspMI | CTAG | 1 cut(s) | 147 |
| StyD4I | CCNGG | 3 cut(s) | 370, 785, 1088 |
| StyI | CCWWGG | 2 cut(s) | 421, 593 |
| TaaI | ACNGT | 3 cut(s) | 388, 522, 1053 |
| TaiI | ACGT | 2 cut(s) | 803, 1294 |
| TaqI | TCGA | 2 cut(s) | 908, 1294 |
| TasI | AATT | 5 cut(s) | 245, 612, 888, 1013, 1018 |
| TauI | GCSGC | 1 cut(s) | 760 |
| TfiI | GAWTC | 1 cut(s) | 707 |
| Tru1I | TTAA | 7 cut(s) | 396, 404, 609, 684, 968, 1071, 1140 |
| Tru9I | TTAA | 7 cut(s) | 396, 404, 609, 684, 968, 1071, 1140 |
| TscAI | CASTG | 1 cut(s) | 724 |
| TseI | GCWGC | 5 cut(s) | 119, 626, 812, 1228, 1285 |
| TspDTI | ATGAA | 2 cut(s) | 189, 1119 |
| TspRI | CASTG | 1 cut(s) | 724 |
| VpaK11BI | GGWCC | 3 cut(s) | 597, 656, 1078 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 375 |
| XapI | RAATTY | 1 cut(s) | 888 |
| XceI | RCATGY | 1 cut(s) | 779 |
| XspI | CTAG | 1 cut(s) | 147 |