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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 336, 509 |
| AccB1I | GGYRCC | 3 cut(s) | 49, 336, 509 |
| AccIII | TCCGGA | 1 cut(s) | 730 |
| AciI | CCGC | 2 cut(s) | 458, 701 |
| AcsI | RAATTY | 1 cut(s) | 100 |
| AcyI | GRCGYC | 1 cut(s) | 50 |
| AfaI | GTAC | 4 cut(s) | 82, 235, 338, 511 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 668 |
| AgsI | TTSAA | 2 cut(s) | 608, 621 |
| AhlI | ACTAGT | 1 cut(s) | 623 |
| AjiI | CACGTC | 1 cut(s) | 14 |
| AluBI | AGCT | 4 cut(s) | 134, 409, 439, 452 |
| AluI | AGCT | 4 cut(s) | 134, 409, 439, 452 |
| Alw21I | GWGCWC | 1 cut(s) | 136 |
| Aor13HI | TCCGGA | 1 cut(s) | 730 |
| ApeKI | GCWGC | 2 cut(s) | 452, 455 |
| ApoI | RAATTY | 1 cut(s) | 100 |
| Asp718I | GGTACC | 2 cut(s) | 336, 509 |
| AspLEI | GCGC | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 2 cut(s) | 259, 583 |
| BanI | GGYRCC | 3 cut(s) | 49, 336, 509 |
| BanII | GRGCYC | 1 cut(s) | 136 |
| BbsI | GAAGAC | 1 cut(s) | 488 |
| Bbv12I | GWGCWC | 1 cut(s) | 136 |
| BbvCI | CCTCAGC | 1 cut(s) | 567 |
| BbvI | GCAGC | 2 cut(s) | 439, 467 |
| BccI | CCATC | 5 cut(s) | 28, 199, 250, 364, 589 |
| BclI | TGATCA | 1 cut(s) | 552 |
| BcuI | ACTAGT | 1 cut(s) | 623 |
| BfaI | CTAG | 5 cut(s) | 39, 87, 129, 534, 624 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BfoI | RGCGCY | 1 cut(s) | 53 |
| BisI | GCNGC | 2 cut(s) | 453, 456 |
| BlsI | GCNGC | 2 cut(s) | 454, 457 |
| BmgBI | CACGTC | 1 cut(s) | 14 |
| BmiI | GGNNCC | 4 cut(s) | 51, 338, 511, 660 |
| BmrI | ACTGGG | 1 cut(s) | 336 |
| BmsI | GCATC | 1 cut(s) | 142 |
| BmuI | ACTGGG | 1 cut(s) | 336 |
| BpiI | GAAGAC | 1 cut(s) | 488 |
| Bpu10I | CCTNAGC | 1 cut(s) | 567 |
| BsaHI | GRCGYC | 1 cut(s) | 50 |
| BsaJI | CCNNGG | 2 cut(s) | 360, 513 |
| BsaWI | WCCGGW | 2 cut(s) | 661, 730 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 668 |
| Bse1I | ACTGG | 1 cut(s) | 331 |
| BseAI | TCCGGA | 1 cut(s) | 730 |
| BseDI | CCNNGG | 2 cut(s) | 360, 513 |
| BseGI | GGATG | 1 cut(s) | 356 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 668 |
| BseMII | CTCAG | 4 cut(s) | 255, 558, 645, 669 |
| BseNI | ACTGG | 1 cut(s) | 331 |
| BseXI | GCAGC | 2 cut(s) | 439, 467 |
| BseYI | CCCAGC | 1 cut(s) | 439 |
| BshNI | GGYRCC | 3 cut(s) | 49, 336, 509 |
| BsiHKAI | GWGCWC | 1 cut(s) | 136 |
| BsiSI | CCGG | 2 cut(s) | 662, 731 |
| BslFI | GGGAC | 1 cut(s) | 456 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 668 |
| BsmFI | GGGAC | 1 cut(s) | 456 |
| BsmI | GAATGC | 1 cut(s) | 320 |
| Bsp1286I | GDGCHC | 1 cut(s) | 136 |
| Bsp13I | TCCGGA | 1 cut(s) | 730 |
| Bsp143I | GATC | 2 cut(s) | 285, 552 |
| BspACI | CCGC | 2 cut(s) | 458, 701 |
| BspCNI | CTCAG | 4 cut(s) | 254, 559, 646, 670 |
| BspEI | TCCGGA | 1 cut(s) | 730 |
| BspLI | GGNNCC | 4 cut(s) | 51, 338, 511, 660 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspQI | GCTCTTC | 1 cut(s) | 442 |
| BspT107I | GGYRCC | 3 cut(s) | 49, 336, 509 |
| BsrI | ACTGG | 1 cut(s) | 331 |
| BssECI | CCNNGG | 2 cut(s) | 360, 513 |
| BssMI | GATC | 2 cut(s) | 285, 552 |
| BssNI | GRCGYC | 1 cut(s) | 50 |
| BssT1I | CCWWGG | 2 cut(s) | 360, 513 |
| Bst4CI | ACNGT | 1 cut(s) | 196 |
| Bst6I | CTCTTC | 1 cut(s) | 442 |
| BstACI | GRCGYC | 1 cut(s) | 50 |
| BstDEI | CTNAG | 4 cut(s) | 241, 567, 654, 678 |
| BstF5I | GGATG | 1 cut(s) | 356 |
| BstH2I | RGCGCY | 1 cut(s) | 53 |
| BstHHI | GCGC | 1 cut(s) | 52 |
| BstKTI | GATC | 2 cut(s) | 288, 555 |
| BstMBI | GATC | 2 cut(s) | 285, 552 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 35, 315, 461 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstV1I | GCAGC | 2 cut(s) | 439, 467 |
| BstV2I | GAAGAC | 1 cut(s) | 488 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 477 |
| BtrI | CACGTC | 1 cut(s) | 14 |
| BtsCI | GGATG | 1 cut(s) | 356 |
| CfoI | GCGC | 1 cut(s) | 52 |
| CseI | GACGC | 1 cut(s) | 702 |
| Csp6I | GTAC | 4 cut(s) | 81, 234, 337, 510 |
| CviQI | GTAC | 4 cut(s) | 81, 234, 337, 510 |
| DdeI | CTNAG | 4 cut(s) | 241, 567, 654, 678 |
| DinI | GGCGCC | 1 cut(s) | 51 |
| DpnI | GATC | 2 cut(s) | 287, 554 |
| DpnII | GATC | 2 cut(s) | 285, 552 |
| Eam1104I | CTCTTC | 1 cut(s) | 442 |
| EarI | CTCTTC | 1 cut(s) | 442 |
| Ecl136II | GAGCTC | 1 cut(s) | 134 |
| Eco130I | CCWWGG | 2 cut(s) | 360, 513 |
| Eco24I | GRGCYC | 1 cut(s) | 136 |
| Eco53kI | GAGCTC | 1 cut(s) | 134 |
| EcoICRI | GAGCTC | 1 cut(s) | 134 |
| EcoRI | GAATTC | 1 cut(s) | 100 |
| EcoT14I | CCWWGG | 2 cut(s) | 360, 513 |
| EcoT38I | GRGCYC | 1 cut(s) | 136 |
| EgeI | GGCGCC | 1 cut(s) | 51 |
| EheI | GGCGCC | 1 cut(s) | 51 |
| ErhI | CCWWGG | 2 cut(s) | 360, 513 |
| FaiI | YATR | 1 cut(s) | 119 |
| FaqI | GGGAC | 1 cut(s) | 456 |
| FbaI | TGATCA | 1 cut(s) | 552 |
| Fnu4HI | GCNGC | 2 cut(s) | 453, 456 |
| FokI | GGATG | 1 cut(s) | 343 |
| FriOI | GRGCYC | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 2 cut(s) | 453, 456 |
| FspBI | CTAG | 5 cut(s) | 39, 87, 129, 534, 624 |
| GlaI | GCGC | 1 cut(s) | 51 |
| GluI | GCNGC | 2 cut(s) | 453, 456 |
| GsaI | CCCAGC | 1 cut(s) | 443 |
| HaeII | RGCGCY | 1 cut(s) | 53 |
| HapII | CCGG | 2 cut(s) | 662, 731 |
| HgaI | GACGC | 1 cut(s) | 702 |
| HhaI | GCGC | 1 cut(s) | 52 |
| Hin1I | GRCGYC | 1 cut(s) | 50 |
| Hin6I | GCGC | 1 cut(s) | 50 |
| HinP1I | GCGC | 1 cut(s) | 50 |
| HinfI | GANTC | 3 cut(s) | 65, 650, 727 |
| HpaII | CCGG | 2 cut(s) | 662, 731 |
| HphI | GGTGA | 2 cut(s) | 259, 583 |
| Hpy188I | TCNGA | 9 cut(s) | 11, 64, 151, 189, 204, 244, 541, 655, 726 |
| Hpy188III | TCNNGA | 3 cut(s) | 129, 137, 731 |
| HpyAV | CCTTC | 3 cut(s) | 602, 631, 698 |
| HpyCH4III | ACNGT | 1 cut(s) | 196 |
| HpyCH4IV | ACGT | 1 cut(s) | 13 |
| HpyCH4V | TGCA | 2 cut(s) | 318, 455 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 35, 315, 461 |
| HpyF3I | CTNAG | 4 cut(s) | 241, 567, 654, 678 |
| HpySE526I | ACGT | 1 cut(s) | 13 |
| Hsp92I | GRCGYC | 1 cut(s) | 50 |
| HspAI | GCGC | 1 cut(s) | 50 |
| KasI | GGCGCC | 1 cut(s) | 49 |
| Kpn2I | TCCGGA | 1 cut(s) | 730 |
| KpnI | GGTACC | 2 cut(s) | 340, 513 |
| Ksp22I | TGATCA | 1 cut(s) | 552 |
| Kzo9I | GATC | 2 cut(s) | 285, 552 |
| LguI | GCTCTTC | 1 cut(s) | 442 |
| LmnI | GCTCC | 2 cut(s) | 519, 664 |
| Lsp1109I | GCAGC | 2 cut(s) | 439, 467 |
| LweI | GCATC | 1 cut(s) | 142 |
| MaeI | CTAG | 5 cut(s) | 39, 87, 129, 534, 624 |
| MaeII | ACGT | 1 cut(s) | 13 |
| MaeIII | GTNAC | 2 cut(s) | 598, 673 |
| MalI | GATC | 2 cut(s) | 287, 554 |
| MboI | GATC | 2 cut(s) | 285, 552 |
| MboII | GAAGA | 3 cut(s) | 445, 459, 493 |
| MhlI | GDGCHC | 1 cut(s) | 136 |
| MluCI | AATT | 4 cut(s) | 58, 100, 198, 411 |
| Mly113I | GGCGCC | 1 cut(s) | 50 |
| MlyI | GAGTC | 2 cut(s) | 59, 644 |
| MmeI | TCCRAC | 1 cut(s) | 87 |
| MnlI | CCTC | 7 cut(s) | 238, 250, 315, 538, 562, 649, 702 |
| MroI | TCCGGA | 1 cut(s) | 730 |
| MseI | TTAA | 2 cut(s) | 632, 742 |
| MspA1I | CMGCKG | 1 cut(s) | 458 |
| MspI | CCGG | 2 cut(s) | 662, 731 |
| Mva1269I | GAATGC | 1 cut(s) | 320 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 35, 315, 461 |
| NarI | GGCGCC | 1 cut(s) | 50 |
| NdeII | GATC | 2 cut(s) | 285, 552 |
| NlaIV | GGNNCC | 4 cut(s) | 51, 338, 511, 660 |
| NmuCI | GTSAC | 1 cut(s) | 598 |
| PciSI | GCTCTTC | 1 cut(s) | 442 |
| PctI | GAATGC | 1 cut(s) | 320 |
| PfeI | GAWTC | 1 cut(s) | 727 |
| PkrI | GCNGC | 2 cut(s) | 454, 457 |
| PleI | GAGTC | 2 cut(s) | 59, 644 |
| PluTI | GGCGCC | 1 cut(s) | 53 |
| PpsI | GAGTC | 2 cut(s) | 59, 644 |
| Psp124BI | GAGCTC | 1 cut(s) | 136 |
| PspFI | CCCAGC | 1 cut(s) | 439 |
| PspN4I | GGNNCC | 4 cut(s) | 51, 338, 511, 660 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 329, 361 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| RsaI | GTAC | 4 cut(s) | 82, 235, 338, 511 |
| RsaNI | GTAC | 4 cut(s) | 81, 234, 337, 510 |
| SacI | GAGCTC | 1 cut(s) | 136 |
| SapI | GCTCTTC | 1 cut(s) | 442 |
| SaqAI | TTAA | 2 cut(s) | 632, 742 |
| SatI | GCNGC | 2 cut(s) | 453, 456 |
| Sau3AI | GATC | 2 cut(s) | 285, 552 |
| SchI | GAGTC | 2 cut(s) | 59, 644 |
| SduI | GDGCHC | 1 cut(s) | 136 |
| SfaNI | GCATC | 1 cut(s) | 142 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| SfoI | GGCGCC | 1 cut(s) | 51 |
| SpeI | ACTAGT | 1 cut(s) | 623 |
| Sse9I | AATT | 4 cut(s) | 58, 100, 198, 411 |
| SsiI | CCGC | 2 cut(s) | 458, 701 |
| SspDI | GGCGCC | 1 cut(s) | 49 |
| SspMI | CTAG | 5 cut(s) | 39, 87, 129, 534, 624 |
| SstI | GAGCTC | 1 cut(s) | 136 |
| StyI | CCWWGG | 2 cut(s) | 360, 513 |
| TaaI | ACNGT | 1 cut(s) | 196 |
| TaiI | ACGT | 1 cut(s) | 16 |
| TasI | AATT | 4 cut(s) | 58, 100, 198, 411 |
| TfiI | GAWTC | 1 cut(s) | 727 |
| Tru1I | TTAA | 2 cut(s) | 632, 742 |
| Tru9I | TTAA | 2 cut(s) | 632, 742 |
| TseFI | GTSAC | 1 cut(s) | 598 |
| TseI | GCWGC | 2 cut(s) | 452, 455 |
| Tsp45I | GTSAC | 1 cut(s) | 598 |
| XapI | RAATTY | 1 cut(s) | 100 |
| XbaI | TCTAGA | 1 cut(s) | 128 |
| XspI | CTAG | 5 cut(s) | 39, 87, 129, 534, 624 |