Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 126 |
| Acc36I | ACCTGC | 1 cut(s) | 46 |
| Acc65I | GGTACC | 1 cut(s) | 616 |
| AccB1I | GGYRCC | 1 cut(s) | 616 |
| AccI | GTMKAC | 1 cut(s) | 118 |
| AciI | CCGC | 3 cut(s) | 75, 445, 650 |
| AclWI | GGATC | 3 cut(s) | 76, 105, 329 |
| AcsI | RAATTY | 2 cut(s) | 420, 603 |
| AfaI | GTAC | 2 cut(s) | 492, 618 |
| AfeI | AGCGCT | 1 cut(s) | 393 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 144, 448 |
| AgsI | TTSAA | 4 cut(s) | 154, 184, 472, 508 |
| AjiI | CACGTC | 1 cut(s) | 28 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 89, 121 |
| AluBI | AGCT | 3 cut(s) | 466, 499, 659 |
| AluI | AGCT | 3 cut(s) | 466, 499, 659 |
| AlwI | GGATC | 3 cut(s) | 76, 105, 329 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 626 |
| Aor51HI | AGCGCT | 1 cut(s) | 393 |
| AoxI | GGCC | 2 cut(s) | 379, 544 |
| ApeKI | GCWGC | 2 cut(s) | 83, 394 |
| ApoI | RAATTY | 2 cut(s) | 420, 603 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 467 |
| Asp718I | GGTACC | 1 cut(s) | 616 |
| AspLEI | GCGC | 1 cut(s) | 394 |
| AspS9I | GGNCC | 4 cut(s) | 128, 272, 341, 379 |
| AsuC2I | CCSGG | 1 cut(s) | 146 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| AvaII | GGWCC | 3 cut(s) | 128, 272, 341 |
| BanI | GGYRCC | 1 cut(s) | 616 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 105, 137 |
| BbsI | GAAGAC | 1 cut(s) | 26 |
| BbvI | GCAGC | 2 cut(s) | 70, 381 |
| BccI | CCATC | 4 cut(s) | 96, 311, 332, 559 |
| BceAI | ACGGC | 1 cut(s) | 592 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 80, 114 |
| BciVI | GTATCC | 1 cut(s) | 40 |
| BcnI | CCSGG | 1 cut(s) | 146 |
| BfaI | CTAG | 5 cut(s) | 41, 299, 353, 636, 670 |
| BfoI | RGCGCY | 1 cut(s) | 395 |
| BfuAI | ACCTGC | 1 cut(s) | 46 |
| BfuI | GTATCC | 1 cut(s) | 40 |
| BisI | GCNGC | 2 cut(s) | 84, 395 |
| BlsI | GCNGC | 2 cut(s) | 85, 396 |
| Bme1390I | CCNGG | 1 cut(s) | 146 |
| Bme18I | GGWCC | 3 cut(s) | 128, 272, 341 |
| BmgBI | CACGTC | 1 cut(s) | 28 |
| BmgT120I | GGNCC | 4 cut(s) | 128, 272, 341, 379 |
| BmiI | GGNNCC | 2 cut(s) | 273, 618 |
| BmrFI | CCNGG | 1 cut(s) | 146 |
| BpiI | GAAGAC | 1 cut(s) | 26 |
| Bpu10I | CCTNAGC | 1 cut(s) | 612 |
| BpuMI | CCSGG | 1 cut(s) | 146 |
| Bsa29I | ATCGAT | 1 cut(s) | 100 |
| BsaBI | GATNNNNATC | 1 cut(s) | 21 |
| BsaJI | CCNNGG | 3 cut(s) | 145, 275, 645 |
| BsaWI | WCCGGW | 2 cut(s) | 328, 493 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 144, 448 |
| Bse118I | RCCGGY | 1 cut(s) | 481 |
| Bse3DI | GCAATG | 1 cut(s) | 86 |
| Bse8I | GATNNNNATC | 1 cut(s) | 21 |
| BseCI | ATCGAT | 1 cut(s) | 100 |
| BseDI | CCNNGG | 3 cut(s) | 145, 275, 645 |
| BseGI | GGATG | 1 cut(s) | 604 |
| BseJI | GATNNNNATC | 1 cut(s) | 21 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 144, 448 |
| BseMI | GCAATG | 1 cut(s) | 86 |
| BseMII | CTCAG | 2 cut(s) | 20, 626 |
| BseXI | GCAGC | 2 cut(s) | 70, 381 |
| BsgI | GTGCAG | 1 cut(s) | 74 |
| Bsh1285I | CGRYCG | 1 cut(s) | 486 |
| BshFI | GGCC | 2 cut(s) | 381, 546 |
| BshNI | GGYRCC | 1 cut(s) | 616 |
| BshVI | ATCGAT | 1 cut(s) | 100 |
| BsiEI | CGRYCG | 1 cut(s) | 486 |
| BsiSI | CCGG | 5 cut(s) | 145, 329, 442, 482, 494 |
| BslFI | GGGAC | 1 cut(s) | 285 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 144, 448 |
| BsmFI | GGGAC | 1 cut(s) | 285 |
| BsnI | GGCC | 2 cut(s) | 381, 546 |
| Bsp143I | GATC | 3 cut(s) | 68, 97, 321 |
| BspACI | CCGC | 3 cut(s) | 75, 445, 650 |
| BspANI | GGCC | 2 cut(s) | 381, 546 |
| BspCNI | CTCAG | 2 cut(s) | 19, 625 |
| BspDI | ATCGAT | 1 cut(s) | 100 |
| BspLI | GGNNCC | 2 cut(s) | 273, 618 |
| BspMI | ACCTGC | 1 cut(s) | 46 |
| BspPI | GGATC | 3 cut(s) | 76, 105, 329 |
| BspQI | GCTCTTC | 1 cut(s) | 473 |
| BspT107I | GGYRCC | 1 cut(s) | 616 |
| BsrDI | GCAATG | 1 cut(s) | 86 |
| BsrFI | RCCGGY | 1 cut(s) | 481 |
| BssAI | RCCGGY | 1 cut(s) | 481 |
| BssECI | CCNNGG | 3 cut(s) | 145, 275, 645 |
| BssMI | GATC | 3 cut(s) | 68, 97, 321 |
| BssT1I | CCWWGG | 2 cut(s) | 275, 645 |
| Bst4CI | ACNGT | 1 cut(s) | 52 |
| Bst6I | CTCTTC | 1 cut(s) | 473 |
| BstDEI | CTNAG | 2 cut(s) | 6, 612 |
| BstF5I | GGATG | 1 cut(s) | 604 |
| BstH2I | RGCGCY | 1 cut(s) | 395 |
| BstHHI | GCGC | 1 cut(s) | 394 |
| BstKTI | GATC | 3 cut(s) | 71, 100, 324 |
| BstMBI | GATC | 3 cut(s) | 68, 97, 321 |
| BstMCI | CGRYCG | 1 cut(s) | 486 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 656 |
| BstSCI | CCNGG | 1 cut(s) | 144 |
| BstV1I | GCAGC | 2 cut(s) | 70, 381 |
| BstV2I | GAAGAC | 1 cut(s) | 26 |
| Bsu15I | ATCGAT | 1 cut(s) | 100 |
| BsuI | GTATCC | 1 cut(s) | 40 |
| BsuRI | GGCC | 2 cut(s) | 381, 546 |
| BsuTUI | ATCGAT | 1 cut(s) | 100 |
| BtrI | CACGTC | 1 cut(s) | 28 |
| BtsCI | GGATG | 1 cut(s) | 604 |
| BveI | ACCTGC | 1 cut(s) | 46 |
| CaiI | CAGNNNCTG | 1 cut(s) | 626 |
| CfoI | GCGC | 1 cut(s) | 394 |
| Cfr10I | RCCGGY | 1 cut(s) | 481 |
| Cfr13I | GGNCC | 4 cut(s) | 128, 272, 341, 379 |
| ClaI | ATCGAT | 1 cut(s) | 100 |
| Csp6I | GTAC | 2 cut(s) | 491, 617 |
| CviAII | CATG | 3 cut(s) | 109, 266, 557 |
| CviQI | GTAC | 2 cut(s) | 491, 617 |
| DdeI | CTNAG | 2 cut(s) | 6, 612 |
| DpnI | GATC | 3 cut(s) | 70, 99, 323 |
| DpnII | GATC | 3 cut(s) | 68, 97, 321 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 126 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 473 |
| EarI | CTCTTC | 1 cut(s) | 473 |
| EciI | GGCGGA | 3 cut(s) | 90, 460, 665 |
| Eco130I | CCWWGG | 2 cut(s) | 275, 645 |
| Eco47I | GGWCC | 3 cut(s) | 128, 272, 341 |
| Eco47III | AGCGCT | 1 cut(s) | 393 |
| EcoO109I | RGGNCCY | 2 cut(s) | 272, 379 |
| EcoRI | GAATTC | 1 cut(s) | 420 |
| EcoT14I | CCWWGG | 2 cut(s) | 275, 645 |
| ErhI | CCWWGG | 2 cut(s) | 275, 645 |
| FaeI | CATG | 3 cut(s) | 112, 269, 560 |
| FaiI | YATR | 7 cut(s) | 110, 267, 315, 399, 513, 543, 558 |
| FaqI | GGGAC | 1 cut(s) | 285 |
| FatI | CATG | 3 cut(s) | 108, 265, 556 |
| FblI | GTMKAC | 1 cut(s) | 118 |
| Fnu4HI | GCNGC | 2 cut(s) | 84, 395 |
| FokI | GGATG | 1 cut(s) | 611 |
| Fsp4HI | GCNGC | 2 cut(s) | 84, 395 |
| FspBI | CTAG | 5 cut(s) | 41, 299, 353, 636, 670 |
| GlaI | GCGC | 1 cut(s) | 393 |
| GluI | GCNGC | 2 cut(s) | 84, 395 |
| HaeII | RGCGCY | 1 cut(s) | 395 |
| HaeIII | GGCC | 2 cut(s) | 381, 546 |
| HapII | CCGG | 5 cut(s) | 145, 329, 442, 482, 494 |
| HhaI | GCGC | 1 cut(s) | 394 |
| Hin1II | CATG | 3 cut(s) | 112, 269, 560 |
| Hin6I | GCGC | 1 cut(s) | 392 |
| HinP1I | GCGC | 1 cut(s) | 392 |
| HincII | GTYRAC | 1 cut(s) | 119 |
| HindII | GTYRAC | 1 cut(s) | 119 |
| HindIII | AAGCTT | 1 cut(s) | 657 |
| HinfI | GANTC | 1 cut(s) | 199 |
| HpaII | CCGG | 5 cut(s) | 145, 329, 442, 482, 494 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 1 cut(s) | 119 |
| Hpy188I | TCNGA | 1 cut(s) | 9 |
| Hpy188III | TCNNGA | 1 cut(s) | 203 |
| Hpy8I | GTNNAC | 1 cut(s) | 119 |
| Hpy99I | CGWCG | 2 cut(s) | 32, 491 |
| HpyAV | CCTTC | 2 cut(s) | 392, 589 |
| HpyCH4III | ACNGT | 1 cut(s) | 52 |
| HpyCH4IV | ACGT | 1 cut(s) | 27 |
| HpyCH4V | TGCA | 5 cut(s) | 55, 86, 91, 265, 397 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 656 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 612 |
| HpySE526I | ACGT | 1 cut(s) | 27 |
| Hsp92II | CATG | 3 cut(s) | 112, 269, 560 |
| HspAI | GCGC | 1 cut(s) | 392 |
| KpnI | GGTACC | 1 cut(s) | 620 |
| Kzo9I | GATC | 3 cut(s) | 68, 97, 321 |
| LguI | GCTCTTC | 1 cut(s) | 473 |
| LmnI | GCTCC | 1 cut(s) | 496 |
| Lsp1109I | GCAGC | 2 cut(s) | 70, 381 |
| MaeI | CTAG | 5 cut(s) | 41, 299, 353, 636, 670 |
| MaeII | ACGT | 1 cut(s) | 27 |
| MaeIII | GTNAC | 3 cut(s) | 251, 536, 572 |
| MalI | GATC | 3 cut(s) | 70, 99, 323 |
| MboI | GATC | 3 cut(s) | 68, 97, 321 |
| MboII | GAAGA | 2 cut(s) | 26, 460 |
| MluCI | AATT | 4 cut(s) | 185, 420, 508, 603 |
| MroXI | GAANNNNTTC | 1 cut(s) | 467 |
| MseI | TTAA | 1 cut(s) | 552 |
| MspI | CCGG | 5 cut(s) | 145, 329, 442, 482, 494 |
| MspR9I | CCNGG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 656 |
| NciI | CCSGG | 1 cut(s) | 146 |
| NdeII | GATC | 3 cut(s) | 68, 97, 321 |
| NlaIII | CATG | 3 cut(s) | 112, 269, 560 |
| NlaIV | GGNNCC | 2 cut(s) | 273, 618 |
| NmuCI | GTSAC | 1 cut(s) | 572 |
| PciSI | GCTCTTC | 1 cut(s) | 473 |
| PdmI | GAANNNNTTC | 1 cut(s) | 467 |
| PfeI | GAWTC | 1 cut(s) | 199 |
| PkrI | GCNGC | 2 cut(s) | 85, 396 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| PspN4I | GGNNCC | 2 cut(s) | 273, 618 |
| PspPI | GGNCC | 4 cut(s) | 128, 272, 341, 379 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| PstNI | CAGNNNCTG | 1 cut(s) | 626 |
| RsaI | GTAC | 2 cut(s) | 492, 618 |
| RsaNI | GTAC | 2 cut(s) | 491, 617 |
| SalI | GTCGAC | 1 cut(s) | 117 |
| SapI | GCTCTTC | 1 cut(s) | 473 |
| SaqAI | TTAA | 1 cut(s) | 552 |
| SatI | GCNGC | 2 cut(s) | 84, 395 |
| Sau3AI | GATC | 3 cut(s) | 68, 97, 321 |
| Sau96I | GGNCC | 4 cut(s) | 128, 272, 341, 379 |
| ScrFI | CCNGG | 1 cut(s) | 146 |
| SetI | ASST | 9 cut(s) | 30, 60, 118, 261, 277, 468, 501, 618, 661 |
| SinI | GGWCC | 3 cut(s) | 128, 272, 341 |
| Sse9I | AATT | 4 cut(s) | 185, 420, 508, 603 |
| SsiI | CCGC | 3 cut(s) | 75, 445, 650 |
| SspMI | CTAG | 5 cut(s) | 41, 299, 353, 636, 670 |
| StyD4I | CCNGG | 1 cut(s) | 144 |
| StyI | CCWWGG | 2 cut(s) | 275, 645 |
| TaaI | ACNGT | 1 cut(s) | 52 |
| TaiI | ACGT | 1 cut(s) | 30 |
| TaqI | TCGA | 3 cut(s) | 100, 118, 197 |
| TaqII | GACCGA | 1 cut(s) | 20 |
| TasI | AATT | 4 cut(s) | 185, 420, 508, 603 |
| TfiI | GAWTC | 1 cut(s) | 199 |
| Tru1I | TTAA | 1 cut(s) | 552 |
| Tru9I | TTAA | 1 cut(s) | 552 |
| TseFI | GTSAC | 1 cut(s) | 572 |
| TseI | GCWGC | 2 cut(s) | 83, 394 |
| Tsp45I | GTSAC | 1 cut(s) | 572 |
| TspDTI | ATGAA | 3 cut(s) | 97, 528, 615 |
| TspGWI | ACGGA | 1 cut(s) | 375 |
| VpaK11BI | GGWCC | 3 cut(s) | 128, 272, 341 |
| XapI | RAATTY | 2 cut(s) | 420, 603 |
| XmiI | GTMKAC | 1 cut(s) | 118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 467 |
| XspI | CTAG | 5 cut(s) | 41, 299, 353, 636, 670 |