Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 8 cut(s) | 50, 89, 107, 167, 185, 308, 383, 437 |
| AclWI | GGATC | 1 cut(s) | 838 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AfaI | GTAC | 4 cut(s) | 396, 577, 669, 930 |
| AgsI | TTSAA | 1 cut(s) | 753 |
| AluBI | AGCT | 5 cut(s) | 41, 239, 284, 662, 839 |
| AluI | AGCT | 5 cut(s) | 41, 239, 284, 662, 839 |
| AlwI | GGATC | 1 cut(s) | 838 |
| AoxI | GGCC | 4 cut(s) | 3, 630, 737, 936 |
| ApeKI | GCWGC | 7 cut(s) | 80, 119, 158, 197, 236, 281, 326 |
| AspLEI | GCGC | 1 cut(s) | 67 |
| AspS9I | GGNCC | 3 cut(s) | 644, 653, 821 |
| AsuC2I | CCSGG | 2 cut(s) | 278, 323 |
| AsuHPI | GGTGA | 4 cut(s) | 50, 461, 811, 911 |
| AvaII | GGWCC | 3 cut(s) | 644, 653, 821 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbvI | GCAGC | 7 cut(s) | 92, 131, 170, 209, 248, 293, 338 |
| BccI | CCATC | 6 cut(s) | 280, 325, 466, 729, 905, 930 |
| BcnI | CCSGG | 2 cut(s) | 278, 323 |
| BfoI | RGCGCY | 1 cut(s) | 68 |
| BglII | AGATCT | 1 cut(s) | 899 |
| BisI | GCNGC | 9 cut(s) | 50, 81, 120, 159, 167, 198, 237, 282, 327 |
| BlpI | GCTNAGC | 2 cut(s) | 240, 285 |
| BlsI | GCNGC | 9 cut(s) | 51, 82, 121, 160, 168, 199, 238, 283, 328 |
| BmcAI | AGTACT | 1 cut(s) | 577 |
| Bme1390I | CCNGG | 2 cut(s) | 278, 323 |
| Bme18I | GGWCC | 3 cut(s) | 644, 653, 821 |
| BmgT120I | GGNCC | 3 cut(s) | 644, 653, 821 |
| BmiI | GGNNCC | 2 cut(s) | 14, 646 |
| BmrFI | CCNGG | 2 cut(s) | 278, 323 |
| BpmI | CTGGAG | 1 cut(s) | 21 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 240, 285 |
| BpuMI | CCSGG | 2 cut(s) | 278, 323 |
| BsaBI | GATNNNNATC | 1 cut(s) | 915 |
| BsaJI | CCNNGG | 4 cut(s) | 276, 321, 591, 649 |
| Bse118I | RCCGGY | 3 cut(s) | 76, 193, 938 |
| Bse1I | ACTGG | 1 cut(s) | 772 |
| Bse3DI | GCAATG | 1 cut(s) | 443 |
| Bse8I | GATNNNNATC | 1 cut(s) | 915 |
| BseDI | CCNNGG | 4 cut(s) | 276, 321, 591, 649 |
| BseGI | GGATG | 3 cut(s) | 272, 317, 688 |
| BseJI | GATNNNNATC | 1 cut(s) | 915 |
| BseMI | GCAATG | 1 cut(s) | 443 |
| BseMII | CTCAG | 2 cut(s) | 114, 153 |
| BseNI | ACTGG | 1 cut(s) | 772 |
| BseRI | GAGGAG | 1 cut(s) | 893 |
| BseXI | GCAGC | 7 cut(s) | 92, 131, 170, 209, 248, 293, 338 |
| BseYI | CCCAGC | 1 cut(s) | 61 |
| BshFI | GGCC | 4 cut(s) | 5, 632, 739, 938 |
| BsiSI | CCGG | 6 cut(s) | 77, 194, 233, 278, 323, 939 |
| BslFI | GGGAC | 1 cut(s) | 630 |
| BsmFI | GGGAC | 1 cut(s) | 630 |
| BsnI | GGCC | 4 cut(s) | 5, 632, 739, 938 |
| Bsp1407I | TGTACA | 2 cut(s) | 394, 928 |
| Bsp143I | GATC | 4 cut(s) | 621, 705, 830, 899 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 240, 285 |
| Bsp19I | CCATGG | 1 cut(s) | 649 |
| BspACI | CCGC | 8 cut(s) | 50, 89, 107, 167, 185, 308, 383, 437 |
| BspANI | GGCC | 4 cut(s) | 5, 632, 739, 938 |
| BspCNI | CTCAG | 2 cut(s) | 113, 152 |
| BspLI | GGNNCC | 2 cut(s) | 14, 646 |
| BspPI | GGATC | 1 cut(s) | 838 |
| BsrDI | GCAATG | 1 cut(s) | 443 |
| BsrFI | RCCGGY | 3 cut(s) | 76, 193, 938 |
| BsrGI | TGTACA | 2 cut(s) | 394, 928 |
| BsrI | ACTGG | 1 cut(s) | 772 |
| BssAI | RCCGGY | 3 cut(s) | 76, 193, 938 |
| BssECI | CCNNGG | 4 cut(s) | 276, 321, 591, 649 |
| BssMI | GATC | 4 cut(s) | 621, 705, 830, 899 |
| BssT1I | CCWWGG | 1 cut(s) | 649 |
| Bst4CI | ACNGT | 1 cut(s) | 478 |
| Bst6I | CTCTTC | 1 cut(s) | 566 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 530 |
| BstAUI | TGTACA | 2 cut(s) | 394, 928 |
| BstDEI | CTNAG | 4 cut(s) | 100, 139, 240, 285 |
| BstDSI | CCRYGG | 1 cut(s) | 649 |
| BstF5I | GGATG | 3 cut(s) | 272, 317, 688 |
| BstH2I | RGCGCY | 1 cut(s) | 68 |
| BstHHI | GCGC | 1 cut(s) | 67 |
| BstKTI | GATC | 4 cut(s) | 624, 708, 833, 902 |
| BstMBI | GATC | 4 cut(s) | 621, 705, 830, 899 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 445, 530 |
| BstSCI | CCNGG | 2 cut(s) | 276, 321 |
| BstV1I | GCAGC | 7 cut(s) | 92, 131, 170, 209, 248, 293, 338 |
| BstX2I | RGATCY | 1 cut(s) | 899 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 767 |
| BstYI | RGATCY | 1 cut(s) | 899 |
| BsuRI | GGCC | 4 cut(s) | 5, 632, 739, 938 |
| BtgI | CCRYGG | 1 cut(s) | 649 |
| BtgZI | GCGATG | 1 cut(s) | 444 |
| BtsCI | GGATG | 3 cut(s) | 272, 317, 688 |
| BtsI | GCAGTG | 1 cut(s) | 410 |
| BtsIMutI | CAGTG | 1 cut(s) | 410 |
| CfoI | GCGC | 1 cut(s) | 67 |
| Cfr10I | RCCGGY | 3 cut(s) | 76, 193, 938 |
| Cfr13I | GGNCC | 3 cut(s) | 644, 653, 821 |
| Csp6I | GTAC | 4 cut(s) | 395, 576, 668, 929 |
| CviAII | CATG | 7 cut(s) | 392, 422, 650, 779, 791, 827, 869 |
| CviQI | GTAC | 4 cut(s) | 395, 576, 668, 929 |
| DdeI | CTNAG | 4 cut(s) | 100, 139, 240, 285 |
| DpnI | GATC | 4 cut(s) | 623, 707, 832, 901 |
| DpnII | GATC | 4 cut(s) | 621, 705, 830, 899 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 566 |
| EarI | CTCTTC | 1 cut(s) | 566 |
| Eco130I | CCWWGG | 1 cut(s) | 649 |
| Eco47I | GGWCC | 3 cut(s) | 644, 653, 821 |
| EcoO109I | RGGNCCY | 2 cut(s) | 644, 821 |
| EcoT14I | CCWWGG | 1 cut(s) | 649 |
| ErhI | CCWWGG | 1 cut(s) | 649 |
| FaeI | CATG | 7 cut(s) | 395, 425, 653, 782, 794, 830, 872 |
| FaqI | GGGAC | 1 cut(s) | 630 |
| FatI | CATG | 7 cut(s) | 391, 421, 649, 778, 790, 826, 868 |
| FauI | CCCGC | 4 cut(s) | 96, 114, 192, 315 |
| Fnu4HI | GCNGC | 9 cut(s) | 50, 81, 120, 159, 167, 198, 237, 282, 327 |
| FokI | GGATG | 3 cut(s) | 259, 304, 695 |
| Fsp4HI | GCNGC | 9 cut(s) | 50, 81, 120, 159, 167, 198, 237, 282, 327 |
| GlaI | GCGC | 1 cut(s) | 66 |
| GluI | GCNGC | 9 cut(s) | 50, 81, 120, 159, 167, 198, 237, 282, 327 |
| GsaI | CCCAGC | 1 cut(s) | 65 |
| GsuI | CTGGAG | 1 cut(s) | 21 |
| HaeII | RGCGCY | 1 cut(s) | 68 |
| HaeIII | GGCC | 4 cut(s) | 5, 632, 739, 938 |
| HapII | CCGG | 6 cut(s) | 77, 194, 233, 278, 323, 939 |
| HhaI | GCGC | 1 cut(s) | 67 |
| Hin1II | CATG | 7 cut(s) | 395, 425, 653, 782, 794, 830, 872 |
| Hin6I | GCGC | 1 cut(s) | 65 |
| HinP1I | GCGC | 1 cut(s) | 65 |
| HincII | GTYRAC | 1 cut(s) | 849 |
| HindII | GTYRAC | 1 cut(s) | 849 |
| HinfI | GANTC | 1 cut(s) | 466 |
| HpaII | CCGG | 6 cut(s) | 77, 194, 233, 278, 323, 939 |
| HphI | GGTGA | 4 cut(s) | 50, 461, 811, 911 |
| Hpy166II | GTNNAC | 3 cut(s) | 397, 849, 931 |
| Hpy188I | TCNGA | 2 cut(s) | 584, 727 |
| Hpy188III | TCNNGA | 2 cut(s) | 556, 709 |
| Hpy8I | GTNNAC | 3 cut(s) | 397, 849, 931 |
| Hpy99I | CGWCG | 1 cut(s) | 611 |
| HpyAV | CCTTC | 6 cut(s) | 462, 635, 750, 790, 800, 812 |
| HpyCH4III | ACNGT | 1 cut(s) | 478 |
| HpyCH4V | TGCA | 2 cut(s) | 524, 533 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 445, 530 |
| HpyF3I | CTNAG | 4 cut(s) | 100, 139, 240, 285 |
| Hsp92II | CATG | 7 cut(s) | 395, 425, 653, 782, 794, 830, 872 |
| HspAI | GCGC | 1 cut(s) | 65 |
| Kzo9I | GATC | 4 cut(s) | 621, 705, 830, 899 |
| Lsp1109I | GCAGC | 7 cut(s) | 92, 131, 170, 209, 248, 293, 338 |
| MaeIII | GTNAC | 4 cut(s) | 56, 95, 134, 341 |
| MalI | GATC | 4 cut(s) | 623, 707, 832, 901 |
| MboI | GATC | 4 cut(s) | 621, 705, 830, 899 |
| MboII | GAAGA | 6 cut(s) | 508, 577, 580, 583, 631, 735 |
| MfeI | CAATTG | 2 cut(s) | 534, 852 |
| MflI | RGATCY | 1 cut(s) | 899 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 534, 852 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 3 cut(s) | 696, 783, 873 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 41 |
| MspI | CCGG | 6 cut(s) | 77, 194, 233, 278, 323, 939 |
| MspR9I | CCNGG | 2 cut(s) | 278, 323 |
| MunI | CAATTG | 2 cut(s) | 534, 852 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 445, 530 |
| NciI | CCSGG | 2 cut(s) | 278, 323 |
| NcoI | CCATGG | 1 cut(s) | 649 |
| NdeII | GATC | 4 cut(s) | 621, 705, 830, 899 |
| NlaIII | CATG | 7 cut(s) | 395, 425, 653, 782, 794, 830, 872 |
| NlaIV | GGNNCC | 2 cut(s) | 14, 646 |
| NmuCI | GTSAC | 4 cut(s) | 56, 95, 134, 341 |
| PfeI | GAWTC | 1 cut(s) | 466 |
| PkrI | GCNGC | 9 cut(s) | 51, 82, 121, 160, 168, 199, 238, 283, 328 |
| PpuMI | RGGWCCY | 2 cut(s) | 644, 821 |
| Psp5II | RGGWCCY | 2 cut(s) | 644, 821 |
| PspFI | CCCAGC | 1 cut(s) | 61 |
| PspN4I | GGNNCC | 2 cut(s) | 14, 646 |
| PspPI | GGNCC | 3 cut(s) | 644, 653, 821 |
| PspPPI | RGGWCCY | 2 cut(s) | 644, 821 |
| PsuI | RGATCY | 1 cut(s) | 899 |
| PvuII | CAGCTG | 1 cut(s) | 41 |
| RsaI | GTAC | 4 cut(s) | 396, 577, 669, 930 |
| RsaNI | GTAC | 4 cut(s) | 395, 576, 668, 929 |
| RseI | CAYNNNNRTG | 3 cut(s) | 696, 783, 873 |
| SatI | GCNGC | 9 cut(s) | 50, 81, 120, 159, 167, 198, 237, 282, 327 |
| Sau3AI | GATC | 4 cut(s) | 621, 705, 830, 899 |
| Sau96I | GGNCC | 3 cut(s) | 644, 653, 821 |
| ScaI | AGTACT | 1 cut(s) | 577 |
| ScrFI | CCNGG | 2 cut(s) | 278, 323 |
| SinI | GGWCC | 3 cut(s) | 644, 653, 821 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 696, 783, 873 |
| Sse9I | AATT | 2 cut(s) | 534, 852 |
| SsiI | CCGC | 8 cut(s) | 50, 89, 107, 167, 185, 308, 383, 437 |
| StyD4I | CCNGG | 2 cut(s) | 276, 321 |
| StyI | CCWWGG | 1 cut(s) | 649 |
| TaaI | ACNGT | 1 cut(s) | 478 |
| TaqI | TCGA | 5 cut(s) | 347, 606, 746, 816, 873 |
| TasI | AATT | 2 cut(s) | 534, 852 |
| TatI | WGTACW | 3 cut(s) | 394, 575, 928 |
| TauI | GCSGC | 2 cut(s) | 52, 169 |
| TfiI | GAWTC | 1 cut(s) | 466 |
| TscAI | CASTG | 1 cut(s) | 417 |
| TseFI | GTSAC | 4 cut(s) | 56, 95, 134, 341 |
| TseI | GCWGC | 7 cut(s) | 80, 119, 158, 197, 236, 281, 326 |
| Tsp45I | GTSAC | 4 cut(s) | 56, 95, 134, 341 |
| TspDTI | ATGAA | 7 cut(s) | 484, 541, 590, 680, 767, 801, 857 |
| TspRI | CASTG | 1 cut(s) | 417 |
| VpaK11BI | GGWCC | 3 cut(s) | 644, 653, 821 |
| ZrmI | AGTACT | 1 cut(s) | 577 |