Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 227, 296 |
| AatII | GACGTC | 1 cut(s) | 489 |
| Acc16I | TGCGCA | 1 cut(s) | 416 |
| Acc65I | GGTACC | 3 cut(s) | 241, 342, 771 |
| AccB1I | GGYRCC | 5 cut(s) | 241, 342, 373, 771, 839 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1364 |
| AccBSI | CCGCTC | 1 cut(s) | 997 |
| AccI | GTMKAC | 1 cut(s) | 608 |
| AccII | CGCG | 2 cut(s) | 287, 755 |
| AclWI | GGATC | 7 cut(s) | 331, 626, 800, 1064, 1349, 1362, 1375 |
| AcoI | YGGCCR | 2 cut(s) | 97, 477 |
| AcsI | RAATTY | 1 cut(s) | 1000 |
| AcyI | GRCGYC | 3 cut(s) | 374, 486, 840 |
| AfaI | GTAC | 9 cut(s) | 243, 344, 520, 686, 713, 773, 991, 1016, 1181 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 515, 700, 701, 818, 908, 1115, 1364 |
| AgsI | TTSAA | 5 cut(s) | 397, 577, 1078, 1220, 1343 |
| AjnI | CCWGG | 2 cut(s) | 620, 1381 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 506, 538, 575, 607 |
| AleI | CACNNNNGTG | 1 cut(s) | 677 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1058, 1090 |
| Alw21I | GWGCWC | 2 cut(s) | 255, 939 |
| Alw26I | GTCTC | 2 cut(s) | 235, 816 |
| AlwI | GGATC | 7 cut(s) | 331, 626, 800, 1064, 1349, 1362, 1375 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 134 |
| Ama87I | CYCGRG | 4 cut(s) | 73, 491, 767, 940 |
| AoxI | GGCC | 6 cut(s) | 97, 477, 809, 918, 1118, 1305 |
| ApeKI | GCWGC | 2 cut(s) | 4, 1317 |
| ApoI | RAATTY | 1 cut(s) | 1000 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 447, 479 |
| Asp718I | GGTACC | 3 cut(s) | 241, 342, 771 |
| AspLEI | GCGC | 4 cut(s) | 65, 376, 417, 842 |
| AspS9I | GGNCC | 6 cut(s) | 289, 298, 691, 810, 919, 1118 |
| AsuC2I | CCSGG | 8 cut(s) | 695, 776, 785, 927, 981, 1054, 1116, 1224 |
| AsuHPI | GGTGA | 1 cut(s) | 442 |
| AvaI | CYCGRG | 4 cut(s) | 73, 491, 767, 940 |
| AvaII | GGWCC | 3 cut(s) | 289, 298, 691 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 755, 788 |
| BamHI | GGATCC | 1 cut(s) | 1354 |
| BanI | GGYRCC | 5 cut(s) | 241, 342, 373, 771, 839 |
| BanII | GRGCYC | 2 cut(s) | 255, 1294 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 599, 631 |
| BbsI | GAAGAC | 1 cut(s) | 618 |
| Bbv12I | GWGCWC | 2 cut(s) | 255, 939 |
| BbvI | GCAGC | 2 cut(s) | 16, 1304 |
| BccI | CCATC | 5 cut(s) | 127, 133, 395, 727, 1355 |
| BceAI | ACGGC | 4 cut(s) | 112, 493, 909, 1093 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 54, 88 |
| BciT130I | CCWGG | 2 cut(s) | 622, 1383 |
| BciVI | GTATCC | 1 cut(s) | 1122 |
| BclI | TGATCA | 1 cut(s) | 879 |
| BcnI | CCSGG | 8 cut(s) | 695, 776, 785, 927, 981, 1054, 1116, 1224 |
| BcoDI | GTCTC | 2 cut(s) | 235, 816 |
| BfaI | CTAG | 1 cut(s) | 1334 |
| BfoI | RGCGCY | 2 cut(s) | 377, 843 |
| BfuI | GTATCC | 1 cut(s) | 1122 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 105 |
| BisI | GCNGC | 5 cut(s) | 5, 817, 858, 1088, 1318 |
| BlpI | GCTNAGC | 2 cut(s) | 162, 1389 |
| BlsI | GCNGC | 5 cut(s) | 6, 818, 859, 1089, 1319 |
| Bme18I | GGWCC | 3 cut(s) | 289, 298, 691 |
| BmeT110I | CYCGRG | 4 cut(s) | 73, 491, 767, 940 |
| BmgT120I | GGNCC | 6 cut(s) | 289, 298, 691, 810, 919, 1118 |
| BmsI | GCATC | 1 cut(s) | 172 |
| BpiI | GAAGAC | 1 cut(s) | 618 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 162, 1389 |
| BpuEI | CTTGAG | 1 cut(s) | 185 |
| BpuMI | CCSGG | 8 cut(s) | 695, 776, 785, 927, 981, 1054, 1116, 1224 |
| Bsa29I | ATCGAT | 1 cut(s) | 645 |
| BsaHI | GRCGYC | 3 cut(s) | 374, 486, 840 |
| BsaJI | CCNNGG | 5 cut(s) | 442, 480, 620, 1115, 1381 |
| BsaWI | WCCGGW | 2 cut(s) | 339, 525 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 254, 284, 1058, 1088 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 515, 700, 701, 818, 908, 1115, 1364 |
| Bse118I | RCCGGY | 4 cut(s) | 904, 916, 1090, 1307 |
| Bse3DI | GCAATG | 2 cut(s) | 417, 880 |
| BseBI | CCWGG | 2 cut(s) | 622, 1383 |
| BseCI | ATCGAT | 1 cut(s) | 645 |
| BseDI | CCNNGG | 5 cut(s) | 442, 480, 620, 1115, 1381 |
| BseGI | GGATG | 2 cut(s) | 144, 846 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 515, 700, 701, 818, 908, 1115, 1364 |
| BseMI | GCAATG | 2 cut(s) | 417, 880 |
| BseMII | CTCAG | 2 cut(s) | 977, 1307 |
| BseRI | GAGGAG | 1 cut(s) | 338 |
| BseXI | GCAGC | 2 cut(s) | 16, 1304 |
| BseYI | CCCAGC | 3 cut(s) | 7, 103, 812 |
| Bsh1236I | CGCG | 2 cut(s) | 287, 755 |
| Bsh1285I | CGRYCG | 3 cut(s) | 530, 909, 926 |
| BshFI | GGCC | 6 cut(s) | 99, 479, 811, 920, 1120, 1307 |
| BshNI | GGYRCC | 5 cut(s) | 241, 342, 373, 771, 839 |
| BshVI | ATCGAT | 1 cut(s) | 645 |
| BsiEI | CGRYCG | 3 cut(s) | 530, 909, 926 |
| BsiHKAI | GWGCWC | 2 cut(s) | 255, 939 |
| BsiHKCI | CYCGRG | 4 cut(s) | 73, 491, 767, 940 |
| BsiWI | CGTACG | 1 cut(s) | 1179 |
| BslFI | GGGAC | 2 cut(s) | 299, 481 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 515, 700, 701, 818, 908, 1115, 1364 |
| BsmAI | GTCTC | 2 cut(s) | 235, 816 |
| BsmFI | GGGAC | 2 cut(s) | 299, 481 |
| BsnI | GGCC | 6 cut(s) | 99, 479, 811, 920, 1120, 1307 |
| BsoBI | CYCGRG | 4 cut(s) | 73, 491, 767, 940 |
| Bsp1286I | GDGCHC | 3 cut(s) | 255, 939, 1294 |
| Bsp143I | GATC | 8 cut(s) | 336, 631, 727, 792, 879, 1056, 1354, 1367 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 162, 1389 |
| Bsp19I | CCATGG | 1 cut(s) | 480 |
| Bsp68I | TCGCGA | 1 cut(s) | 755 |
| BspANI | GGCC | 6 cut(s) | 99, 479, 811, 920, 1120, 1307 |
| BspCNI | CTCAG | 2 cut(s) | 978, 1306 |
| BspDI | ATCGAT | 1 cut(s) | 645 |
| BspFNI | CGCG | 2 cut(s) | 287, 755 |
| BspPI | GGATC | 7 cut(s) | 331, 626, 800, 1064, 1349, 1362, 1375 |
| BspT107I | GGYRCC | 5 cut(s) | 241, 342, 373, 771, 839 |
| BsrBI | CCGCTC | 1 cut(s) | 997 |
| BsrDI | GCAATG | 2 cut(s) | 417, 880 |
| BsrFI | RCCGGY | 4 cut(s) | 904, 916, 1090, 1307 |
| BssAI | RCCGGY | 4 cut(s) | 904, 916, 1090, 1307 |
| BssECI | CCNNGG | 5 cut(s) | 442, 480, 620, 1115, 1381 |
| BssMI | GATC | 8 cut(s) | 336, 631, 727, 792, 879, 1056, 1354, 1367 |
| BssNAI | GTATAC | 1 cut(s) | 609 |
| BssNI | GRCGYC | 3 cut(s) | 374, 486, 840 |
| BssT1I | CCWWGG | 1 cut(s) | 480 |
| Bst1107I | GTATAC | 1 cut(s) | 609 |
| Bst2UI | CCWGG | 2 cut(s) | 622, 1383 |
| Bst4CI | ACNGT | 1 cut(s) | 518 |
| Bst6I | CTCTTC | 1 cut(s) | 728 |
| BstACI | GRCGYC | 3 cut(s) | 374, 486, 840 |
| BstC8I | GCNNGC | 7 cut(s) | 101, 429, 918, 1092, 1186, 1190, 1267 |
| BstDEI | CTNAG | 5 cut(s) | 162, 986, 1137, 1293, 1389 |
| BstDSI | CCRYGG | 2 cut(s) | 442, 480 |
| BstF5I | GGATG | 2 cut(s) | 144, 846 |
| BstFNI | CGCG | 2 cut(s) | 287, 755 |
| BstH2I | RGCGCY | 2 cut(s) | 377, 843 |
| BstHHI | GCGC | 4 cut(s) | 65, 376, 417, 842 |
| BstKTI | GATC | 8 cut(s) | 339, 634, 730, 795, 882, 1059, 1357, 1370 |
| BstMAI | GTCTC | 2 cut(s) | 235, 816 |
| BstMBI | GATC | 8 cut(s) | 336, 631, 727, 792, 879, 1056, 1354, 1367 |
| BstMCI | CGRYCG | 3 cut(s) | 530, 909, 926 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 105, 1271, 1280, 1289 |
| BstNI | CCWGG | 2 cut(s) | 622, 1383 |
| BstNSI | RCATGY | 2 cut(s) | 431, 1265 |
| BstUI | CGCG | 2 cut(s) | 287, 755 |
| BstV1I | GCAGC | 2 cut(s) | 16, 1304 |
| BstV2I | GAAGAC | 1 cut(s) | 618 |
| BstX2I | RGATCY | 1 cut(s) | 1354 |
| BstYI | RGATCY | 1 cut(s) | 1354 |
| BstZ17I | GTATAC | 1 cut(s) | 609 |
| Bsu15I | ATCGAT | 1 cut(s) | 645 |
| BsuI | GTATCC | 1 cut(s) | 1122 |
| BsuRI | GGCC | 6 cut(s) | 99, 479, 811, 920, 1120, 1307 |
| BsuTUI | ATCGAT | 1 cut(s) | 645 |
| BtgI | CCRYGG | 2 cut(s) | 442, 480 |
| BtgZI | GCGATG | 1 cut(s) | 770 |
| BtsCI | GGATG | 2 cut(s) | 144, 846 |
| BtsIMutI | CAGTG | 1 cut(s) | 1285 |
| BtuMI | TCGCGA | 1 cut(s) | 755 |
| Cac8I | GCNNGC | 7 cut(s) | 101, 429, 918, 1092, 1186, 1190, 1267 |
| CaiI | CAGNNNCTG | 1 cut(s) | 134 |
| CfoI | GCGC | 4 cut(s) | 65, 376, 417, 842 |
| Cfr10I | RCCGGY | 4 cut(s) | 904, 916, 1090, 1307 |
| Cfr13I | GGNCC | 6 cut(s) | 289, 298, 691, 810, 919, 1118 |
| ClaI | ATCGAT | 1 cut(s) | 645 |
| CseI | GACGC | 1 cut(s) | 749 |
| Csp6I | GTAC | 9 cut(s) | 242, 343, 519, 685, 712, 772, 990, 1015, 1180 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1309, 1344 |
| CviAII | CATG | 6 cut(s) | 14, 428, 481, 559, 1262, 1371 |
| CviQI | GTAC | 9 cut(s) | 242, 343, 519, 685, 712, 772, 990, 1015, 1180 |
| DdeI | CTNAG | 5 cut(s) | 162, 986, 1137, 1293, 1389 |
| DinI | GGCGCC | 2 cut(s) | 375, 841 |
| DpnI | GATC | 8 cut(s) | 338, 633, 729, 794, 881, 1058, 1356, 1369 |
| DpnII | GATC | 8 cut(s) | 336, 631, 727, 792, 879, 1056, 1354, 1367 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 227, 296 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 227, 296 |
| EaeI | YGGCCR | 2 cut(s) | 97, 477 |
| Eam1104I | CTCTTC | 1 cut(s) | 728 |
| EarI | CTCTTC | 1 cut(s) | 728 |
| EciI | GGCGGA | 1 cut(s) | 834 |
| Ecl136II | GAGCTC | 1 cut(s) | 253 |
| Eco130I | CCWWGG | 1 cut(s) | 480 |
| Eco24I | GRGCYC | 2 cut(s) | 255, 1294 |
| Eco32I | GATATC | 2 cut(s) | 535, 781 |
| Eco47I | GGWCC | 3 cut(s) | 289, 298, 691 |
| Eco53kI | GAGCTC | 1 cut(s) | 253 |
| Eco88I | CYCGRG | 4 cut(s) | 73, 491, 767, 940 |
| EcoICRI | GAGCTC | 1 cut(s) | 253 |
| EcoRII | CCWGG | 2 cut(s) | 620, 1381 |
| EcoRV | GATATC | 2 cut(s) | 535, 781 |
| EcoT14I | CCWWGG | 1 cut(s) | 480 |
| EcoT38I | GRGCYC | 2 cut(s) | 255, 1294 |
| EgeI | GGCGCC | 2 cut(s) | 375, 841 |
| EheI | GGCGCC | 2 cut(s) | 375, 841 |
| ErhI | CCWWGG | 1 cut(s) | 480 |
| FaeI | CATG | 6 cut(s) | 17, 431, 484, 562, 1265, 1374 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 575, 607 |
| FaqI | GGGAC | 2 cut(s) | 299, 481 |
| FatI | CATG | 6 cut(s) | 13, 427, 480, 558, 1261, 1370 |
| FauI | CCCGC | 1 cut(s) | 513 |
| FbaI | TGATCA | 1 cut(s) | 879 |
| FblI | GTMKAC | 1 cut(s) | 608 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 817, 858, 1088, 1318 |
| FokI | GGATG | 2 cut(s) | 131, 833 |
| FriOI | GRGCYC | 2 cut(s) | 255, 1294 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 817, 858, 1088, 1318 |
| FspBI | CTAG | 1 cut(s) | 1334 |
| FspI | TGCGCA | 1 cut(s) | 416 |
| GlaI | GCGC | 4 cut(s) | 64, 375, 416, 841 |
| GluI | GCNGC | 5 cut(s) | 5, 817, 858, 1088, 1318 |
| GsaI | CCCAGC | 3 cut(s) | 11, 107, 816 |
| HaeII | RGCGCY | 2 cut(s) | 377, 843 |
| HaeIII | GGCC | 6 cut(s) | 99, 479, 811, 920, 1120, 1307 |
| HgaI | GACGC | 1 cut(s) | 749 |
| HhaI | GCGC | 4 cut(s) | 65, 376, 417, 842 |
| Hin1I | GRCGYC | 3 cut(s) | 374, 486, 840 |
| Hin1II | CATG | 6 cut(s) | 17, 431, 484, 562, 1265, 1374 |
| Hin6I | GCGC | 4 cut(s) | 63, 374, 415, 840 |
| HinP1I | GCGC | 4 cut(s) | 63, 374, 415, 840 |
| HinfI | GANTC | 9 cut(s) | 131, 168, 447, 469, 494, 668, 765, 1067, 1216 |
| HphI | GGTGA | 1 cut(s) | 442 |
| Hpy166II | GTNNAC | 6 cut(s) | 91, 301, 609, 687, 739, 891 |
| Hpy188III | TCNNGA | 6 cut(s) | 52, 232, 466, 754, 790, 940 |
| Hpy8I | GTNNAC | 6 cut(s) | 91, 301, 609, 687, 739, 891 |
| Hpy99I | CGWCG | 4 cut(s) | 356, 478, 602, 1099 |
| HpyAV | CCTTC | 4 cut(s) | 328, 598, 1135, 1297 |
| HpyCH4III | ACNGT | 1 cut(s) | 518 |
| HpyCH4IV | ACGT | 5 cut(s) | 486, 521, 678, 683, 710 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 1166, 1320, 1374 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 105, 1271, 1280, 1289 |
| HpyF3I | CTNAG | 5 cut(s) | 162, 986, 1137, 1293, 1389 |
| HpySE526I | ACGT | 5 cut(s) | 486, 521, 678, 683, 710 |
| Hsp92I | GRCGYC | 3 cut(s) | 374, 486, 840 |
| Hsp92II | CATG | 6 cut(s) | 17, 431, 484, 562, 1265, 1374 |
| HspAI | GCGC | 4 cut(s) | 63, 374, 415, 840 |
| KasI | GGCGCC | 2 cut(s) | 373, 839 |
| KpnI | GGTACC | 3 cut(s) | 245, 346, 775 |
| KroI | GCCGGC | 2 cut(s) | 916, 1090 |
| KroNI | GCCGGC | 2 cut(s) | 918, 1092 |
| Ksp22I | TGATCA | 1 cut(s) | 879 |
| Kzo9I | GATC | 8 cut(s) | 336, 631, 727, 792, 879, 1056, 1354, 1367 |
| LmnI | GCTCC | 4 cut(s) | 548, 942, 994, 1145 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 1304 |
| LweI | GCATC | 1 cut(s) | 172 |
| MaeI | CTAG | 1 cut(s) | 1334 |
| MaeII | ACGT | 5 cut(s) | 486, 521, 678, 683, 710 |
| MaeIII | GTNAC | 2 cut(s) | 679, 1208 |
| MalI | GATC | 8 cut(s) | 338, 633, 729, 794, 881, 1058, 1356, 1369 |
| MbiI | CCGCTC | 1 cut(s) | 997 |
| MboI | GATC | 8 cut(s) | 336, 631, 727, 792, 879, 1056, 1354, 1367 |
| MboII | GAAGA | 4 cut(s) | 583, 586, 618, 715 |
| MflI | RGATCY | 1 cut(s) | 1354 |
| MhlI | GDGCHC | 3 cut(s) | 255, 939, 1294 |
| MluCI | AATT | 3 cut(s) | 747, 1000, 1246 |
| Mly113I | GGCGCC | 2 cut(s) | 374, 840 |
| MlyI | GAGTC | 5 cut(s) | 177, 463, 503, 759, 1076 |
| MmeI | TCCRAC | 5 cut(s) | 334, 510, 537, 659, 889 |
| MreI | CGCCGGCG | 1 cut(s) | 1090 |
| MroNI | GCCGGC | 2 cut(s) | 916, 1090 |
| MseI | TTAA | 3 cut(s) | 563, 746, 1239 |
| MslI | CAYNNNNRTG | 2 cut(s) | 306, 677 |
| MspA1I | CMGCKG | 3 cut(s) | 7, 103, 816 |
| MvaI | CCWGG | 2 cut(s) | 622, 1383 |
| MvnI | CGCG | 2 cut(s) | 287, 755 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 105, 1271, 1280, 1289 |
| NaeI | GCCGGC | 2 cut(s) | 918, 1092 |
| NarI | GGCGCC | 2 cut(s) | 374, 840 |
| NciI | CCSGG | 8 cut(s) | 695, 776, 785, 927, 981, 1054, 1116, 1224 |
| NcoI | CCATGG | 1 cut(s) | 480 |
| NdeII | GATC | 8 cut(s) | 336, 631, 727, 792, 879, 1056, 1354, 1367 |
| NgoMIV | GCCGGC | 2 cut(s) | 916, 1090 |
| NlaIII | CATG | 6 cut(s) | 17, 431, 484, 562, 1265, 1374 |
| NmeAIII | GCCGAG | 1 cut(s) | 350 |
| NmuCI | GTSAC | 2 cut(s) | 679, 1208 |
| NruI | TCGCGA | 1 cut(s) | 755 |
| NsbI | TGCGCA | 1 cut(s) | 416 |
| NspI | RCATGY | 2 cut(s) | 431, 1265 |
| OliI | CACNNNNGTG | 1 cut(s) | 677 |
| PaeI | GCATGC | 1 cut(s) | 431 |
| PaeR7I | CTCGAG | 1 cut(s) | 491 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 357, 506, 663, 680, 707 |
| PdiI | GCCGGC | 2 cut(s) | 918, 1092 |
| PfeI | GAWTC | 4 cut(s) | 131, 447, 668, 1216 |
| Pfl23II | CGTACG | 1 cut(s) | 1179 |
| PflFI | GACNNNGTC | 1 cut(s) | 472 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1364 |
| PkrI | GCNGC | 5 cut(s) | 6, 818, 859, 1089, 1319 |
| PleI | GAGTC | 5 cut(s) | 176, 463, 502, 759, 1075 |
| PluTI | GGCGCC | 2 cut(s) | 377, 843 |
| PpsI | GAGTC | 5 cut(s) | 176, 463, 502, 759, 1075 |
| Psp124BI | GAGCTC | 1 cut(s) | 255 |
| Psp6I | CCWGG | 2 cut(s) | 620, 1381 |
| PspFI | CCCAGC | 3 cut(s) | 7, 103, 812 |
| PspGI | CCWGG | 2 cut(s) | 620, 1381 |
| PspLI | CGTACG | 1 cut(s) | 1179 |
| PspPI | GGNCC | 6 cut(s) | 289, 298, 691, 810, 919, 1118 |
| PspXI | VCTCGAGB | 1 cut(s) | 491 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 668, 700 |
| PstNI | CAGNNNCTG | 1 cut(s) | 134 |
| PsuI | RGATCY | 1 cut(s) | 1354 |
| PsyI | GACNNNGTC | 1 cut(s) | 472 |
| PvuII | CAGCTG | 2 cut(s) | 7, 103 |
| RruI | TCGCGA | 1 cut(s) | 755 |
| RsaI | GTAC | 9 cut(s) | 243, 344, 520, 686, 713, 773, 991, 1016, 1181 |
| RsaNI | GTAC | 9 cut(s) | 242, 343, 519, 685, 712, 772, 990, 1015, 1180 |
| RseI | CAYNNNNRTG | 2 cut(s) | 306, 677 |
| SacI | GAGCTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 3 cut(s) | 563, 746, 1239 |
| SatI | GCNGC | 5 cut(s) | 5, 817, 858, 1088, 1318 |
| Sau3AI | GATC | 8 cut(s) | 336, 631, 727, 792, 879, 1056, 1354, 1367 |
| Sau96I | GGNCC | 6 cut(s) | 289, 298, 691, 810, 919, 1118 |
| SchI | GAGTC | 5 cut(s) | 177, 463, 503, 759, 1076 |
| SduI | GDGCHC | 3 cut(s) | 255, 939, 1294 |
| SfaNI | GCATC | 1 cut(s) | 172 |
| SfoI | GGCGCC | 2 cut(s) | 375, 841 |
| Sfr274I | CTCGAG | 1 cut(s) | 491 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1090 |
| SinI | GGWCC | 3 cut(s) | 289, 298, 691 |
| SlaI | CTCGAG | 1 cut(s) | 491 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 306, 677 |
| SmlI | CTYRAG | 2 cut(s) | 200, 491 |
| SmoI | CTYRAG | 2 cut(s) | 200, 491 |
| SphI | GCATGC | 1 cut(s) | 431 |
| Sse9I | AATT | 3 cut(s) | 747, 1000, 1246 |
| SspDI | GGCGCC | 2 cut(s) | 373, 839 |
| SspMI | CTAG | 1 cut(s) | 1334 |
| SstI | GAGCTC | 1 cut(s) | 255 |
| StyI | CCWWGG | 1 cut(s) | 480 |
| TaaI | ACNGT | 1 cut(s) | 518 |
| TaiI | ACGT | 5 cut(s) | 489, 524, 681, 686, 713 |
| TaqI | TCGA | 9 cut(s) | 53, 233, 492, 600, 645, 666, 726, 1028, 1350 |
| TasI | AATT | 3 cut(s) | 747, 1000, 1246 |
| TauI | GCSGC | 3 cut(s) | 819, 860, 1090 |
| TfiI | GAWTC | 4 cut(s) | 131, 447, 668, 1216 |
| Tru1I | TTAA | 3 cut(s) | 563, 746, 1239 |
| Tru9I | TTAA | 3 cut(s) | 563, 746, 1239 |
| TscAI | CASTG | 1 cut(s) | 1285 |
| TseFI | GTSAC | 2 cut(s) | 679, 1208 |
| TseI | GCWGC | 2 cut(s) | 4, 1317 |
| Tsp45I | GTSAC | 2 cut(s) | 679, 1208 |
| TspDTI | ATGAA | 3 cut(s) | 34, 773, 937 |
| TspGWI | ACGGA | 5 cut(s) | 459, 462, 535, 704, 1007 |
| TspRI | CASTG | 1 cut(s) | 1285 |
| Tth111I | GACNNNGTC | 1 cut(s) | 472 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1364 |
| VpaK11BI | GGWCC | 3 cut(s) | 289, 298, 691 |
| XapI | RAATTY | 1 cut(s) | 1000 |
| XceI | RCATGY | 2 cut(s) | 431, 1265 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 646 |
| XhoI | CTCGAG | 1 cut(s) | 491 |
| XmiI | GTMKAC | 1 cut(s) | 608 |
| XspI | CTAG | 1 cut(s) | 1334 |
| ZraI | GACGTC | 1 cut(s) | 487 |