Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 251 |
| Acc65I | GGTACC | 1 cut(s) | 158 |
| AccB1I | GGYRCC | 1 cut(s) | 158 |
| AccII | CGCG | 1 cut(s) | 609 |
| AciI | CCGC | 8 cut(s) | 44, 83, 137, 397, 607, 715, 1096, 1111 |
| AclWI | GGATC | 3 cut(s) | 462, 500, 1087 |
| AcsI | RAATTY | 2 cut(s) | 522, 545 |
| AcyI | GRCGYC | 1 cut(s) | 1036 |
| AfaI | GTAC | 1 cut(s) | 160 |
| AfeI | AGCGCT | 1 cut(s) | 218 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 853 |
| AflII | CTTAAG | 1 cut(s) | 826 |
| AgsI | TTSAA | 8 cut(s) | 92, 133, 154, 203, 230, 349, 545, 948 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 854 |
| AjnI | CCWGG | 3 cut(s) | 145, 362, 530 |
| AluBI | AGCT | 3 cut(s) | 831, 935, 1153 |
| AluI | AGCT | 3 cut(s) | 831, 935, 1153 |
| Alw26I | GTCTC | 3 cut(s) | 329, 759, 1015 |
| AlwI | GGATC | 3 cut(s) | 462, 500, 1087 |
| Ama87I | CYCGRG | 1 cut(s) | 756 |
| Aor51HI | AGCGCT | 1 cut(s) | 218 |
| AoxI | GGCC | 5 cut(s) | 190, 360, 563, 591, 844 |
| ApeKI | GCWGC | 2 cut(s) | 80, 1047 |
| ApoI | RAATTY | 2 cut(s) | 522, 545 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 328, 360 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 926 |
| Asp718I | GGTACC | 1 cut(s) | 158 |
| AspLEI | GCGC | 2 cut(s) | 219, 252 |
| AspS9I | GGNCC | 3 cut(s) | 272, 279, 844 |
| AsuHPI | GGTGA | 4 cut(s) | 224, 439, 571, 880 |
| AvaI | CYCGRG | 1 cut(s) | 756 |
| AvaII | GGWCC | 2 cut(s) | 272, 279 |
| BaeGI | GKGCMC | 1 cut(s) | 329 |
| BanI | GGYRCC | 1 cut(s) | 158 |
| BbsI | GAAGAC | 1 cut(s) | 374 |
| BbvI | GCAGC | 2 cut(s) | 67, 1059 |
| BccI | CCATC | 7 cut(s) | 170, 349, 631, 688, 792, 835, 847 |
| BceAI | ACGGC | 1 cut(s) | 805 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 672, 706 |
| BciT130I | CCWGG | 3 cut(s) | 147, 364, 532 |
| BcoDI | GTCTC | 3 cut(s) | 329, 759, 1015 |
| BfoI | RGCGCY | 1 cut(s) | 220 |
| BfrI | CTTAAG | 1 cut(s) | 826 |
| BisI | GCNGC | 3 cut(s) | 81, 607, 1048 |
| BlsI | GCNGC | 3 cut(s) | 82, 608, 1049 |
| Bme1390I | CCNGG | 3 cut(s) | 147, 364, 532 |
| Bme18I | GGWCC | 2 cut(s) | 272, 279 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 854 |
| BmeT110I | CYCGRG | 1 cut(s) | 756 |
| BmgT120I | GGNCC | 3 cut(s) | 272, 279, 844 |
| BmiI | GGNNCC | 2 cut(s) | 160, 273 |
| BmrFI | CCNGG | 3 cut(s) | 147, 364, 532 |
| BmsI | GCATC | 6 cut(s) | 18, 196, 399, 622, 861, 1146 |
| BpiI | GAAGAC | 1 cut(s) | 374 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 739, 771, 1117, 1149 |
| BpmI | CTGGAG | 1 cut(s) | 1162 |
| Bsa29I | ATCGAT | 1 cut(s) | 692 |
| BsaHI | GRCGYC | 1 cut(s) | 1036 |
| BsaI | GGTCTC | 1 cut(s) | 1015 |
| BsaJI | CCNNGG | 4 cut(s) | 146, 275, 363, 594 |
| BsaWI | WCCGGW | 2 cut(s) | 331, 553 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 853 |
| BseBI | CCWGG | 3 cut(s) | 147, 364, 532 |
| BseCI | ATCGAT | 1 cut(s) | 692 |
| BseDI | CCNNGG | 4 cut(s) | 146, 275, 363, 594 |
| BseGI | GGATG | 3 cut(s) | 22, 647, 803 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 853 |
| BseRI | GAGGAG | 1 cut(s) | 686 |
| BseSI | GKGCMC | 1 cut(s) | 329 |
| BseXI | GCAGC | 2 cut(s) | 67, 1059 |
| BseYI | CCCAGC | 1 cut(s) | 778 |
| Bsh1236I | CGCG | 1 cut(s) | 609 |
| BshFI | GGCC | 5 cut(s) | 192, 362, 565, 593, 846 |
| BshNI | GGYRCC | 1 cut(s) | 158 |
| BshVI | ATCGAT | 1 cut(s) | 692 |
| BsiHKCI | CYCGRG | 1 cut(s) | 756 |
| BsiSI | CCGG | 3 cut(s) | 332, 554, 566 |
| BslFI | GGGAC | 2 cut(s) | 153, 795 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 853 |
| BsmAI | GTCTC | 3 cut(s) | 329, 759, 1015 |
| BsmFI | GGGAC | 2 cut(s) | 153, 795 |
| BsmI | GAATGC | 1 cut(s) | 973 |
| BsnI | GGCC | 5 cut(s) | 192, 362, 565, 593, 846 |
| Bso31I | GGTCTC | 1 cut(s) | 1015 |
| BsoBI | CYCGRG | 1 cut(s) | 756 |
| Bsp1286I | GDGCHC | 1 cut(s) | 329 |
| Bsp143I | GATC | 5 cut(s) | 185, 454, 492, 732, 1092 |
| BspACI | CCGC | 8 cut(s) | 44, 83, 137, 397, 607, 715, 1096, 1111 |
| BspANI | GGCC | 5 cut(s) | 192, 362, 565, 593, 846 |
| BspDI | ATCGAT | 1 cut(s) | 692 |
| BspFNI | CGCG | 1 cut(s) | 609 |
| BspHI | TCATGA | 1 cut(s) | 628 |
| BspLI | GGNNCC | 2 cut(s) | 160, 273 |
| BspPI | GGATC | 3 cut(s) | 462, 500, 1087 |
| BspQI | GCTCTTC | 2 cut(s) | 477, 942 |
| BspT107I | GGYRCC | 1 cut(s) | 158 |
| BspTI | CTTAAG | 1 cut(s) | 826 |
| BspTNI | GGTCTC | 1 cut(s) | 1015 |
| BssECI | CCNNGG | 4 cut(s) | 146, 275, 363, 594 |
| BssMI | GATC | 5 cut(s) | 185, 454, 492, 732, 1092 |
| BssNI | GRCGYC | 1 cut(s) | 1036 |
| BssT1I | CCWWGG | 2 cut(s) | 275, 594 |
| Bst2UI | CCWGG | 3 cut(s) | 147, 364, 532 |
| Bst4CI | ACNGT | 2 cut(s) | 340, 811 |
| Bst6I | CTCTTC | 3 cut(s) | 477, 942, 1077 |
| BstACI | GRCGYC | 1 cut(s) | 1036 |
| BstAFI | CTTAAG | 1 cut(s) | 826 |
| BstC8I | GCNNGC | 3 cut(s) | 7, 126, 717 |
| BstDEI | CTNAG | 2 cut(s) | 834, 931 |
| BstF5I | GGATG | 3 cut(s) | 22, 647, 803 |
| BstFNI | CGCG | 1 cut(s) | 609 |
| BstH2I | RGCGCY | 1 cut(s) | 220 |
| BstHHI | GCGC | 2 cut(s) | 219, 252 |
| BstKTI | GATC | 5 cut(s) | 188, 457, 495, 735, 1095 |
| BstMAI | GTCTC | 3 cut(s) | 329, 759, 1015 |
| BstMBI | GATC | 5 cut(s) | 185, 454, 492, 732, 1092 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 50, 59, 134, 828 |
| BstNI | CCWGG | 3 cut(s) | 147, 364, 532 |
| BstSCI | CCNGG | 3 cut(s) | 145, 362, 530 |
| BstSLI | GKGCMC | 1 cut(s) | 329 |
| BstUI | CGCG | 1 cut(s) | 609 |
| BstV1I | GCAGC | 2 cut(s) | 67, 1059 |
| BstV2I | GAAGAC | 1 cut(s) | 374 |
| BstX2I | RGATCY | 2 cut(s) | 454, 1092 |
| BstYI | RGATCY | 2 cut(s) | 454, 1092 |
| Bsu15I | ATCGAT | 1 cut(s) | 692 |
| BsuRI | GGCC | 5 cut(s) | 192, 362, 565, 593, 846 |
| BsuTUI | ATCGAT | 1 cut(s) | 692 |
| BtgZI | GCGATG | 1 cut(s) | 650 |
| BtsCI | GGATG | 3 cut(s) | 22, 647, 803 |
| Cac8I | GCNNGC | 3 cut(s) | 7, 126, 717 |
| CciI | TCATGA | 1 cut(s) | 628 |
| CfoI | GCGC | 2 cut(s) | 219, 252 |
| Cfr13I | GGNCC | 3 cut(s) | 272, 279, 844 |
| ClaI | ATCGAT | 1 cut(s) | 692 |
| CseI | GACGC | 1 cut(s) | 1025 |
| Csp6I | GTAC | 1 cut(s) | 159 |
| CviAII | CATG | 3 cut(s) | 266, 629, 859 |
| CviQI | GTAC | 1 cut(s) | 159 |
| DdeI | CTNAG | 2 cut(s) | 834, 931 |
| DpnI | GATC | 5 cut(s) | 187, 456, 494, 734, 1094 |
| DpnII | GATC | 5 cut(s) | 185, 454, 492, 732, 1092 |
| DraI | TTTAAA | 1 cut(s) | 661 |
| DriI | GACNNNNNGTC | 1 cut(s) | 854 |
| Eam1104I | CTCTTC | 3 cut(s) | 477, 942, 1077 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 854 |
| EarI | CTCTTC | 3 cut(s) | 477, 942, 1077 |
| EciI | GGCGGA | 1 cut(s) | 59 |
| Eco130I | CCWWGG | 2 cut(s) | 275, 594 |
| Eco147I | AGGCCT | 2 cut(s) | 192, 362 |
| Eco31I | GGTCTC | 1 cut(s) | 1015 |
| Eco47I | GGWCC | 2 cut(s) | 272, 279 |
| Eco47III | AGCGCT | 1 cut(s) | 218 |
| Eco88I | CYCGRG | 1 cut(s) | 756 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| EcoRI | GAATTC | 1 cut(s) | 522 |
| EcoRII | CCWGG | 3 cut(s) | 145, 362, 530 |
| EcoT14I | CCWWGG | 2 cut(s) | 275, 594 |
| ErhI | CCWWGG | 2 cut(s) | 275, 594 |
| FaeI | CATG | 3 cut(s) | 269, 632, 862 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 914, 946 |
| FaqI | GGGAC | 2 cut(s) | 153, 795 |
| FatI | CATG | 3 cut(s) | 265, 628, 858 |
| FauI | CCCGC | 3 cut(s) | 130, 708, 1104 |
| Fnu4HI | GCNGC | 3 cut(s) | 81, 607, 1048 |
| FokI | GGATG | 3 cut(s) | 29, 654, 810 |
| Fsp4HI | GCNGC | 3 cut(s) | 81, 607, 1048 |
| FspI | TGCGCA | 1 cut(s) | 251 |
| GlaI | GCGC | 2 cut(s) | 218, 251 |
| GluI | GCNGC | 3 cut(s) | 81, 607, 1048 |
| GsaI | CCCAGC | 1 cut(s) | 782 |
| GsuI | CTGGAG | 1 cut(s) | 1162 |
| HaeII | RGCGCY | 1 cut(s) | 220 |
| HaeIII | GGCC | 5 cut(s) | 192, 362, 565, 593, 846 |
| HapII | CCGG | 3 cut(s) | 332, 554, 566 |
| HgaI | GACGC | 1 cut(s) | 1025 |
| HhaI | GCGC | 2 cut(s) | 219, 252 |
| Hin1I | GRCGYC | 1 cut(s) | 1036 |
| Hin1II | CATG | 3 cut(s) | 269, 632, 862 |
| Hin6I | GCGC | 2 cut(s) | 217, 250 |
| HinP1I | GCGC | 2 cut(s) | 217, 250 |
| HinfI | GANTC | 7 cut(s) | 20, 37, 47, 349, 863, 944, 1132 |
| HpaII | CCGG | 3 cut(s) | 332, 554, 566 |
| HphI | GGTGA | 4 cut(s) | 224, 439, 571, 880 |
| Hpy188I | TCNGA | 6 cut(s) | 68, 185, 258, 354, 459, 468 |
| Hpy188III | TCNNGA | 5 cut(s) | 92, 203, 629, 941, 1141 |
| Hpy99I | CGWCG | 1 cut(s) | 519 |
| HpyAV | CCTTC | 4 cut(s) | 127, 583, 661, 796 |
| HpyCH4III | ACNGT | 2 cut(s) | 340, 811 |
| HpyCH4V | TGCA | 3 cut(s) | 265, 985, 1159 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 50, 59, 134, 828 |
| HpyF3I | CTNAG | 2 cut(s) | 834, 931 |
| Hsp92I | GRCGYC | 1 cut(s) | 1036 |
| Hsp92II | CATG | 3 cut(s) | 269, 632, 862 |
| HspAI | GCGC | 2 cut(s) | 217, 250 |
| KpnI | GGTACC | 1 cut(s) | 162 |
| Kzo9I | GATC | 5 cut(s) | 185, 454, 492, 732, 1092 |
| LguI | GCTCTTC | 2 cut(s) | 477, 942 |
| LmnI | GCTCC | 1 cut(s) | 533 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 1059 |
| LweI | GCATC | 6 cut(s) | 18, 196, 399, 622, 861, 1146 |
| MaeIII | GTNAC | 4 cut(s) | 287, 599, 644, 805 |
| MalI | GATC | 5 cut(s) | 187, 456, 494, 734, 1094 |
| MboI | GATC | 5 cut(s) | 185, 454, 492, 732, 1092 |
| MflI | RGATCY | 2 cut(s) | 454, 1092 |
| MhlI | GDGCHC | 1 cut(s) | 329 |
| MluCI | AATT | 6 cut(s) | 230, 522, 545, 569, 1001, 1136 |
| MlyI | GAGTC | 4 cut(s) | 41, 46, 872, 1126 |
| MmeI | TCCRAC | 3 cut(s) | 94, 933, 940 |
| MroXI | GAANNNNTTC | 1 cut(s) | 926 |
| MseI | TTAA | 4 cut(s) | 572, 660, 827, 1062 |
| MslI | CAYNNNNRTG | 1 cut(s) | 993 |
| MspCI | CTTAAG | 1 cut(s) | 826 |
| MspI | CCGG | 3 cut(s) | 332, 554, 566 |
| MspR9I | CCNGG | 3 cut(s) | 147, 364, 532 |
| Mva1269I | GAATGC | 1 cut(s) | 973 |
| MvaI | CCWGG | 3 cut(s) | 147, 364, 532 |
| MvnI | CGCG | 1 cut(s) | 609 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 50, 59, 134, 828 |
| NdeII | GATC | 5 cut(s) | 185, 454, 492, 732, 1092 |
| NlaIII | CATG | 3 cut(s) | 269, 632, 862 |
| NlaIV | GGNNCC | 2 cut(s) | 160, 273 |
| NmeAIII | GCCGAG | 1 cut(s) | 29 |
| NmuCI | GTSAC | 2 cut(s) | 644, 805 |
| NsbI | TGCGCA | 1 cut(s) | 251 |
| PagI | TCATGA | 1 cut(s) | 628 |
| PceI | AGGCCT | 2 cut(s) | 192, 362 |
| PciSI | GCTCTTC | 2 cut(s) | 477, 942 |
| PctI | GAATGC | 1 cut(s) | 973 |
| PdmI | GAANNNNTTC | 1 cut(s) | 926 |
| PfeI | GAWTC | 3 cut(s) | 20, 349, 944 |
| PfoI | TCCNGGA | 1 cut(s) | 530 |
| PkrI | GCNGC | 3 cut(s) | 82, 608, 1049 |
| PleI | GAGTC | 4 cut(s) | 41, 45, 871, 1126 |
| PpsI | GAGTC | 4 cut(s) | 41, 45, 871, 1126 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| Psp6I | CCWGG | 3 cut(s) | 145, 362, 530 |
| PspFI | CCCAGC | 1 cut(s) | 778 |
| PspGI | CCWGG | 3 cut(s) | 145, 362, 530 |
| PspN4I | GGNNCC | 2 cut(s) | 160, 273 |
| PspPI | GGNCC | 3 cut(s) | 272, 279, 844 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| PsuI | RGATCY | 2 cut(s) | 454, 1092 |
| RsaI | GTAC | 1 cut(s) | 160 |
| RsaNI | GTAC | 1 cut(s) | 159 |
| RseI | CAYNNNNRTG | 1 cut(s) | 993 |
| SapI | GCTCTTC | 2 cut(s) | 477, 942 |
| SaqAI | TTAA | 4 cut(s) | 572, 660, 827, 1062 |
| SatI | GCNGC | 3 cut(s) | 81, 607, 1048 |
| Sau3AI | GATC | 5 cut(s) | 185, 454, 492, 732, 1092 |
| Sau96I | GGNCC | 3 cut(s) | 272, 279, 844 |
| SchI | GAGTC | 4 cut(s) | 41, 46, 872, 1126 |
| ScrFI | CCNGG | 3 cut(s) | 147, 364, 532 |
| SduI | GDGCHC | 1 cut(s) | 329 |
| SfaNI | GCATC | 6 cut(s) | 18, 196, 399, 622, 861, 1146 |
| SinI | GGWCC | 2 cut(s) | 272, 279 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 993 |
| SmlI | CTYRAG | 1 cut(s) | 826 |
| SmoI | CTYRAG | 1 cut(s) | 826 |
| Sse9I | AATT | 6 cut(s) | 230, 522, 545, 569, 1001, 1136 |
| SseBI | AGGCCT | 2 cut(s) | 192, 362 |
| SsiI | CCGC | 8 cut(s) | 44, 83, 137, 397, 607, 715, 1096, 1111 |
| StuI | AGGCCT | 2 cut(s) | 192, 362 |
| StyD4I | CCNGG | 3 cut(s) | 145, 362, 530 |
| StyI | CCWWGG | 2 cut(s) | 275, 594 |
| TaaI | ACNGT | 2 cut(s) | 340, 811 |
| TaqI | TCGA | 1 cut(s) | 692 |
| TasI | AATT | 6 cut(s) | 230, 522, 545, 569, 1001, 1136 |
| TauI | GCSGC | 1 cut(s) | 609 |
| TfiI | GAWTC | 3 cut(s) | 20, 349, 944 |
| Tru1I | TTAA | 4 cut(s) | 572, 660, 827, 1062 |
| Tru9I | TTAA | 4 cut(s) | 572, 660, 827, 1062 |
| TseFI | GTSAC | 2 cut(s) | 644, 805 |
| TseI | GCWGC | 2 cut(s) | 80, 1047 |
| Tsp45I | GTSAC | 2 cut(s) | 644, 805 |
| TspDTI | ATGAA | 4 cut(s) | 568, 617, 678, 1089 |
| Vha464I | CTTAAG | 1 cut(s) | 826 |
| VpaK11BI | GGWCC | 2 cut(s) | 272, 279 |
| XapI | RAATTY | 2 cut(s) | 522, 545 |
| XmnI | GAANNNNTTC | 1 cut(s) | 926 |