Helicase associated domain (HA2) Add an annotation
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UQ_con | PF00179 | 9 - 152 | 1.6e-46 | Ubiquitin-conjugating enzyme |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 21 |
| AciI | CCGC | 2 cut(s) | 21, 52 |
| AclWI | GGATC | 3 cut(s) | 363, 372, 377 |
| AcsI | RAATTY | 4 cut(s) | 112, 230, 241, 336 |
| AcuI | CTGAAG | 1 cut(s) | 178 |
| AfaI | GTAC | 3 cut(s) | 154, 173, 434 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 298, 475 |
| AgeI | ACCGGT | 1 cut(s) | 149 |
| AleI | CACNNNNGTG | 1 cut(s) | 195 |
| AluBI | AGCT | 1 cut(s) | 463 |
| AluI | AGCT | 1 cut(s) | 463 |
| Alw26I | GTCTC | 3 cut(s) | 32, 83, 307 |
| AlwI | GGATC | 3 cut(s) | 363, 372, 377 |
| AoxI | GGCC | 1 cut(s) | 456 |
| ApoI | RAATTY | 4 cut(s) | 112, 230, 241, 336 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 97, 129 |
| AsiGI | ACCGGT | 1 cut(s) | 149 |
| AspLEI | GCGC | 1 cut(s) | 42 |
| AsuC2I | CCSGG | 1 cut(s) | 141 |
| AsuHPI | GGTGA | 1 cut(s) | 398 |
| BbsI | GAAGAC | 1 cut(s) | 207 |
| BbvCI | CCTCAGC | 1 cut(s) | 33 |
| BccI | CCATC | 4 cut(s) | 69, 95, 112, 274 |
| BcnI | CCSGG | 1 cut(s) | 141 |
| BcoDI | GTCTC | 3 cut(s) | 32, 83, 307 |
| BfaI | CTAG | 1 cut(s) | 210 |
| BfmI | CTRYAG | 1 cut(s) | 426 |
| Bme1390I | CCNGG | 1 cut(s) | 141 |
| BmrFI | CCNGG | 1 cut(s) | 141 |
| BmrI | ACTGGG | 1 cut(s) | 169 |
| BmuI | ACTGGG | 1 cut(s) | 169 |
| BpiI | GAAGAC | 1 cut(s) | 207 |
| Bpu10I | CCTNAGC | 1 cut(s) | 33 |
| BpuMI | CCSGG | 1 cut(s) | 141 |
| BsaI | GGTCTC | 1 cut(s) | 307 |
| BsaJI | CCNNGG | 1 cut(s) | 67 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 29, 59, 155, 185 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 298, 475 |
| Bse118I | RCCGGY | 1 cut(s) | 149 |
| Bse1I | ACTGG | 2 cut(s) | 164, 366 |
| Bse3DI | GCAATG | 1 cut(s) | 127 |
| BseDI | CCNNGG | 1 cut(s) | 67 |
| BseGI | GGATG | 1 cut(s) | 61 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 298, 475 |
| BseMI | GCAATG | 1 cut(s) | 127 |
| BseMII | CTCAG | 1 cut(s) | 24 |
| BseNI | ACTGG | 2 cut(s) | 164, 366 |
| BseRI | GAGGAG | 1 cut(s) | 50 |
| BseYI | CCCAGC | 1 cut(s) | 235 |
| BsgI | GTGCAG | 1 cut(s) | 372 |
| Bsh1236I | CGCG | 1 cut(s) | 21 |
| Bsh1285I | CGRYCG | 1 cut(s) | 25 |
| BshFI | GGCC | 1 cut(s) | 458 |
| BshTI | ACCGGT | 1 cut(s) | 149 |
| BsiEI | CGRYCG | 1 cut(s) | 25 |
| BsiSI | CCGG | 3 cut(s) | 86, 140, 150 |
| BslFI | GGGAC | 1 cut(s) | 118 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 298, 475 |
| BsmAI | GTCTC | 3 cut(s) | 32, 83, 307 |
| BsmBI | CGTCTC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 1 cut(s) | 118 |
| BsmI | GAATGC | 1 cut(s) | 348 |
| BsnI | GGCC | 1 cut(s) | 458 |
| Bso31I | GGTCTC | 1 cut(s) | 307 |
| Bsp143I | GATC | 3 cut(s) | 355, 364, 382 |
| Bsp19I | CCATGG | 1 cut(s) | 67 |
| BspACI | CCGC | 2 cut(s) | 21, 52 |
| BspANI | GGCC | 1 cut(s) | 458 |
| BspCNI | CTCAG | 1 cut(s) | 25 |
| BspFNI | CGCG | 1 cut(s) | 21 |
| BspPI | GGATC | 3 cut(s) | 363, 372, 377 |
| BspTNI | GGTCTC | 1 cut(s) | 307 |
| BsrDI | GCAATG | 1 cut(s) | 127 |
| BsrFI | RCCGGY | 1 cut(s) | 149 |
| BsrI | ACTGG | 2 cut(s) | 164, 366 |
| BssAI | RCCGGY | 1 cut(s) | 149 |
| BssECI | CCNNGG | 1 cut(s) | 67 |
| BssMI | GATC | 3 cut(s) | 355, 364, 382 |
| BssT1I | CCWWGG | 1 cut(s) | 67 |
| Bst4CI | ACNGT | 4 cut(s) | 109, 277, 305, 328 |
| Bst6I | CTCTTC | 1 cut(s) | 416 |
| BstC8I | GCNNGC | 4 cut(s) | 19, 215, 452, 456 |
| BstDEI | CTNAG | 1 cut(s) | 33 |
| BstDSI | CCRYGG | 1 cut(s) | 67 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 296 |
| BstF5I | GGATG | 1 cut(s) | 61 |
| BstFNI | CGCG | 1 cut(s) | 21 |
| BstHHI | GCGC | 1 cut(s) | 42 |
| BstKTI | GATC | 3 cut(s) | 358, 367, 385 |
| BstMAI | GTCTC | 3 cut(s) | 32, 83, 307 |
| BstMBI | GATC | 3 cut(s) | 355, 364, 382 |
| BstMCI | CGRYCG | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 460 |
| BstSCI | CCNGG | 1 cut(s) | 139 |
| BstSFI | CTRYAG | 1 cut(s) | 426 |
| BstUI | CGCG | 1 cut(s) | 21 |
| BstV2I | GAAGAC | 1 cut(s) | 207 |
| BstX2I | RGATCY | 1 cut(s) | 355 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 68 |
| BstYI | RGATCY | 1 cut(s) | 355 |
| BsuRI | GGCC | 1 cut(s) | 458 |
| BtgI | CCRYGG | 1 cut(s) | 67 |
| BtsCI | GGATG | 1 cut(s) | 61 |
| BtsIMutI | CAGTG | 2 cut(s) | 202, 310 |
| Cac8I | GCNNGC | 4 cut(s) | 19, 215, 452, 456 |
| CfoI | GCGC | 1 cut(s) | 42 |
| Cfr10I | RCCGGY | 1 cut(s) | 149 |
| Csp6I | GTAC | 3 cut(s) | 153, 172, 433 |
| CspAI | ACCGGT | 1 cut(s) | 149 |
| CviAII | CATG | 2 cut(s) | 48, 68 |
| CviJI | RGCY | 6 cut(s) | 85, 217, 370, 402, 458, 463 |
| CviKI_1 | RGCY | 6 cut(s) | 85, 217, 370, 402, 458, 463 |
| CviQI | GTAC | 3 cut(s) | 153, 172, 433 |
| DdeI | CTNAG | 1 cut(s) | 33 |
| DpnI | GATC | 3 cut(s) | 357, 366, 384 |
| DpnII | GATC | 3 cut(s) | 355, 364, 382 |
| Eam1104I | CTCTTC | 1 cut(s) | 416 |
| EarI | CTCTTC | 1 cut(s) | 416 |
| EciI | GGCGGA | 1 cut(s) | 67 |
| Eco130I | CCWWGG | 1 cut(s) | 67 |
| Eco31I | GGTCTC | 1 cut(s) | 307 |
| Eco57I | CTGAAG | 1 cut(s) | 178 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 296 |
| EcoT14I | CCWWGG | 1 cut(s) | 67 |
| ErhI | CCWWGG | 1 cut(s) | 67 |
| Esp3I | CGTCTC | 1 cut(s) | 32 |
| FaeI | CATG | 2 cut(s) | 51, 71 |
| FaiI | YATR | 4 cut(s) | 49, 69, 262, 466 |
| FaqI | GGGAC | 1 cut(s) | 118 |
| FatI | CATG | 2 cut(s) | 47, 67 |
| FokI | GGATG | 1 cut(s) | 48 |
| FspBI | CTAG | 1 cut(s) | 210 |
| GlaI | GCGC | 1 cut(s) | 41 |
| GsaI | CCCAGC | 1 cut(s) | 239 |
| HaeIII | GGCC | 1 cut(s) | 458 |
| HapII | CCGG | 3 cut(s) | 86, 140, 150 |
| HhaI | GCGC | 1 cut(s) | 42 |
| Hin1II | CATG | 2 cut(s) | 51, 71 |
| Hin6I | GCGC | 1 cut(s) | 40 |
| HinP1I | GCGC | 1 cut(s) | 40 |
| HinfI | GANTC | 1 cut(s) | 422 |
| HpaII | CCGG | 3 cut(s) | 86, 140, 150 |
| HphI | GGTGA | 1 cut(s) | 398 |
| Hpy188I | TCNGA | 1 cut(s) | 382 |
| Hpy188III | TCNNGA | 4 cut(s) | 6, 270, 353, 419 |
| HpyAV | CCTTC | 2 cut(s) | 392, 435 |
| HpyCH4III | ACNGT | 4 cut(s) | 109, 277, 305, 328 |
| HpyCH4V | TGCA | 4 cut(s) | 17, 132, 228, 389 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 460 |
| HpyF3I | CTNAG | 1 cut(s) | 33 |
| Hsp92II | CATG | 2 cut(s) | 51, 71 |
| HspAI | GCGC | 1 cut(s) | 40 |
| Kzo9I | GATC | 3 cut(s) | 355, 364, 382 |
| LmnI | GCTCC | 1 cut(s) | 37 |
| MaeI | CTAG | 1 cut(s) | 210 |
| MalI | GATC | 3 cut(s) | 357, 366, 384 |
| MboI | GATC | 3 cut(s) | 355, 364, 382 |
| MboII | GAAGA | 4 cut(s) | 67, 212, 238, 403 |
| MflI | RGATCY | 1 cut(s) | 355 |
| MluCI | AATT | 6 cut(s) | 112, 135, 230, 241, 321, 336 |
| MmeI | TCCRAC | 1 cut(s) | 290 |
| MnlI | CCTC | 7 cut(s) | 28, 157, 228, 292, 388, 419, 483 |
| MseI | TTAA | 1 cut(s) | 294 |
| MslI | CAYNNNNRTG | 3 cut(s) | 66, 195, 255 |
| MspI | CCGG | 3 cut(s) | 86, 140, 150 |
| MspR9I | CCNGG | 1 cut(s) | 141 |
| Mva1269I | GAATGC | 1 cut(s) | 348 |
| MvnI | CGCG | 1 cut(s) | 21 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 460 |
| NciI | CCSGG | 1 cut(s) | 141 |
| NcoI | CCATGG | 1 cut(s) | 67 |
| NdeII | GATC | 3 cut(s) | 355, 364, 382 |
| NlaIII | CATG | 2 cut(s) | 51, 71 |
| OliI | CACNNNNGTG | 1 cut(s) | 195 |
| PctI | GAATGC | 1 cut(s) | 348 |
| PfeI | GAWTC | 1 cut(s) | 422 |
| PinAI | ACCGGT | 1 cut(s) | 149 |
| PspFI | CCCAGC | 1 cut(s) | 235 |
| PsuI | RGATCY | 1 cut(s) | 355 |
| RsaI | GTAC | 3 cut(s) | 154, 173, 434 |
| RsaNI | GTAC | 3 cut(s) | 153, 172, 433 |
| RseI | CAYNNNNRTG | 3 cut(s) | 66, 195, 255 |
| SaqAI | TTAA | 1 cut(s) | 294 |
| Sau3AI | GATC | 3 cut(s) | 355, 364, 382 |
| ScrFI | CCNGG | 1 cut(s) | 141 |
| SetI | ASST | 5 cut(s) | 13, 100, 411, 465, 475 |
| SfcI | CTRYAG | 1 cut(s) | 426 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 66, 195, 255 |
| Sse9I | AATT | 6 cut(s) | 112, 135, 230, 241, 321, 336 |
| SsiI | CCGC | 2 cut(s) | 21, 52 |
| SspMI | CTAG | 1 cut(s) | 210 |
| StyD4I | CCNGG | 1 cut(s) | 139 |
| StyI | CCWWGG | 1 cut(s) | 67 |
| TaaI | ACNGT | 4 cut(s) | 109, 277, 305, 328 |
| TasI | AATT | 6 cut(s) | 112, 135, 230, 241, 321, 336 |
| TatI | WGTACW | 1 cut(s) | 432 |
| TfiI | GAWTC | 1 cut(s) | 422 |
| Tru1I | TTAA | 1 cut(s) | 294 |
| Tru9I | TTAA | 1 cut(s) | 294 |
| TscAI | CASTG | 2 cut(s) | 202, 310 |
| TspDTI | ATGAA | 1 cut(s) | 403 |
| TspRI | CASTG | 2 cut(s) | 202, 310 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 296 |
| XapI | RAATTY | 4 cut(s) | 112, 230, 241, 336 |
| XspI | CTAG | 1 cut(s) | 210 |