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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 56 |
| AccB1I | GGYRCC | 1 cut(s) | 56 |
| AccI | GTMKAC | 1 cut(s) | 390 |
| AciI | CCGC | 1 cut(s) | 38 |
| AcoI | YGGCCR | 2 cut(s) | 123, 356 |
| AfaI | GTAC | 1 cut(s) | 58 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 95, 164 |
| AgsI | TTSAA | 2 cut(s) | 136, 438 |
| AjiI | CACGTC | 1 cut(s) | 427 |
| AjnI | CCWGG | 2 cut(s) | 256, 277 |
| AluBI | AGCT | 3 cut(s) | 142, 266, 350 |
| AluI | AGCT | 3 cut(s) | 142, 266, 350 |
| Alw21I | GWGCWC | 1 cut(s) | 191 |
| Alw26I | GTCTC | 1 cut(s) | 560 |
| AoxI | GGCC | 3 cut(s) | 123, 127, 356 |
| ApeKI | GCWGC | 1 cut(s) | 23 |
| Asp718I | GGTACC | 1 cut(s) | 56 |
| AspA2I | CCTAGG | 2 cut(s) | 32, 89 |
| AspS9I | GGNCC | 2 cut(s) | 167, 366 |
| AsuHPI | GGTGA | 4 cut(s) | 80, 281, 442, 553 |
| AvaII | GGWCC | 2 cut(s) | 167, 366 |
| AvrII | CCTAGG | 2 cut(s) | 32, 89 |
| AxyI | CCTNAGG | 1 cut(s) | 453 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 48, 81 |
| BanI | GGYRCC | 1 cut(s) | 56 |
| Bbv12I | GWGCWC | 1 cut(s) | 191 |
| BbvI | GCAGC | 1 cut(s) | 10 |
| BccI | CCATC | 3 cut(s) | 68, 379, 475 |
| BceAI | ACGGC | 1 cut(s) | 371 |
| BciT130I | CCWGG | 2 cut(s) | 258, 279 |
| BciVI | GTATCC | 1 cut(s) | 537 |
| BcoDI | GTCTC | 1 cut(s) | 560 |
| BfaI | CTAG | 3 cut(s) | 33, 75, 90 |
| BfmI | CTRYAG | 1 cut(s) | 180 |
| BfuI | GTATCC | 1 cut(s) | 537 |
| BisI | GCNGC | 1 cut(s) | 24 |
| BlnI | CCTAGG | 2 cut(s) | 32, 89 |
| BlsI | GCNGC | 1 cut(s) | 25 |
| Bme1390I | CCNGG | 2 cut(s) | 258, 279 |
| Bme18I | GGWCC | 2 cut(s) | 167, 366 |
| BmgBI | CACGTC | 1 cut(s) | 427 |
| BmgT120I | GGNCC | 2 cut(s) | 167, 366 |
| BmiI | GGNNCC | 4 cut(s) | 58, 156, 255, 367 |
| BmrFI | CCNGG | 2 cut(s) | 258, 279 |
| BsaJI | CCNNGG | 2 cut(s) | 32, 89 |
| BsaWI | WCCGGW | 1 cut(s) | 529 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 95, 164 |
| Bse118I | RCCGGY | 1 cut(s) | 125 |
| Bse21I | CCTNAGG | 1 cut(s) | 453 |
| BseBI | CCWGG | 2 cut(s) | 258, 279 |
| BseDI | CCNNGG | 2 cut(s) | 32, 89 |
| BseGI | GGATG | 3 cut(s) | 52, 175, 565 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 95, 164 |
| BseMII | CTCAG | 5 cut(s) | 348, 390, 444, 468, 546 |
| BseRI | GAGGAG | 2 cut(s) | 322, 551 |
| BseX3I | CGGCCG | 1 cut(s) | 123 |
| BseXI | GCAGC | 1 cut(s) | 10 |
| Bsh1285I | CGRYCG | 1 cut(s) | 126 |
| BshFI | GGCC | 3 cut(s) | 125, 129, 358 |
| BshNI | GGYRCC | 1 cut(s) | 56 |
| BsiEI | CGRYCG | 1 cut(s) | 126 |
| BsiHKAI | GWGCWC | 1 cut(s) | 191 |
| BsiSI | CCGG | 2 cut(s) | 126, 530 |
| BslFI | GGGAC | 3 cut(s) | 227, 296, 487 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 95, 164 |
| BsmAI | GTCTC | 1 cut(s) | 560 |
| BsmFI | GGGAC | 3 cut(s) | 227, 296, 487 |
| BsnI | GGCC | 3 cut(s) | 125, 129, 358 |
| Bsp1286I | GDGCHC | 1 cut(s) | 191 |
| Bsp143I | GATC | 1 cut(s) | 299 |
| BspACI | CCGC | 1 cut(s) | 38 |
| BspANI | GGCC | 3 cut(s) | 125, 129, 358 |
| BspCNI | CTCAG | 5 cut(s) | 347, 391, 445, 469, 547 |
| BspLI | GGNNCC | 4 cut(s) | 58, 156, 255, 367 |
| BspQI | GCTCTTC | 1 cut(s) | 480 |
| BspT107I | GGYRCC | 1 cut(s) | 56 |
| BsrFI | RCCGGY | 1 cut(s) | 125 |
| BssAI | RCCGGY | 1 cut(s) | 125 |
| BssECI | CCNNGG | 2 cut(s) | 32, 89 |
| BssMI | GATC | 1 cut(s) | 299 |
| BssT1I | CCWWGG | 2 cut(s) | 32, 89 |
| Bst2UI | CCWGG | 2 cut(s) | 258, 279 |
| Bst4CI | ACNGT | 2 cut(s) | 218, 571 |
| Bst6I | CTCTTC | 1 cut(s) | 480 |
| BstC8I | GCNNGC | 4 cut(s) | 7, 127, 232, 408 |
| BstDEI | CTNAG | 5 cut(s) | 334, 399, 453, 477, 555 |
| BstF5I | GGATG | 3 cut(s) | 52, 175, 565 |
| BstKTI | GATC | 1 cut(s) | 302 |
| BstMAI | GTCTC | 1 cut(s) | 560 |
| BstMBI | GATC | 1 cut(s) | 299 |
| BstMCI | CGRYCG | 1 cut(s) | 126 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 122 |
| BstNI | CCWGG | 2 cut(s) | 258, 279 |
| BstSCI | CCNGG | 2 cut(s) | 256, 277 |
| BstSFI | CTRYAG | 1 cut(s) | 180 |
| BstV1I | GCAGC | 1 cut(s) | 10 |
| BstZI | CGGCCG | 1 cut(s) | 123 |
| Bsu36I | CCTNAGG | 1 cut(s) | 453 |
| BsuI | GTATCC | 1 cut(s) | 537 |
| BsuRI | GGCC | 3 cut(s) | 125, 129, 358 |
| BtrI | CACGTC | 1 cut(s) | 427 |
| BtsCI | GGATG | 3 cut(s) | 52, 175, 565 |
| Cac8I | GCNNGC | 4 cut(s) | 7, 127, 232, 408 |
| Cfr10I | RCCGGY | 1 cut(s) | 125 |
| Cfr13I | GGNCC | 2 cut(s) | 167, 366 |
| Csp6I | GTAC | 1 cut(s) | 57 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 223, 258 |
| CviAII | CATG | 2 cut(s) | 250, 585 |
| CviQI | GTAC | 1 cut(s) | 57 |
| DdeI | CTNAG | 5 cut(s) | 334, 399, 453, 477, 555 |
| DpnI | GATC | 1 cut(s) | 301 |
| DpnII | GATC | 1 cut(s) | 299 |
| EaeI | YGGCCR | 2 cut(s) | 123, 356 |
| EagI | CGGCCG | 1 cut(s) | 123 |
| Eam1104I | CTCTTC | 1 cut(s) | 480 |
| EarI | CTCTTC | 1 cut(s) | 480 |
| EclXI | CGGCCG | 1 cut(s) | 123 |
| Eco130I | CCWWGG | 2 cut(s) | 32, 89 |
| Eco47I | GGWCC | 2 cut(s) | 167, 366 |
| Eco52I | CGGCCG | 1 cut(s) | 123 |
| Eco81I | CCTNAGG | 1 cut(s) | 453 |
| EcoRII | CCWGG | 2 cut(s) | 256, 277 |
| EcoT14I | CCWWGG | 2 cut(s) | 32, 89 |
| ErhI | CCWWGG | 2 cut(s) | 32, 89 |
| FaeI | CATG | 2 cut(s) | 253, 588 |
| FaiI | YATR | 4 cut(s) | 251, 293, 509, 586 |
| FaqI | GGGAC | 3 cut(s) | 227, 296, 487 |
| FatI | CATG | 2 cut(s) | 249, 584 |
| FblI | GTMKAC | 1 cut(s) | 390 |
| Fnu4HI | GCNGC | 1 cut(s) | 24 |
| FokI | GGATG | 3 cut(s) | 59, 162, 572 |
| FseI | GGCCGGCC | 1 cut(s) | 129 |
| Fsp4HI | GCNGC | 1 cut(s) | 24 |
| FspBI | CTAG | 3 cut(s) | 33, 75, 90 |
| GluI | GCNGC | 1 cut(s) | 24 |
| HaeIII | GGCC | 3 cut(s) | 125, 129, 358 |
| HapII | CCGG | 2 cut(s) | 126, 530 |
| Hin1II | CATG | 2 cut(s) | 253, 588 |
| HincII | GTYRAC | 1 cut(s) | 391 |
| HindII | GTYRAC | 1 cut(s) | 391 |
| HindIII | AAGCTT | 1 cut(s) | 140 |
| HinfI | GANTC | 2 cut(s) | 50, 520 |
| HpaII | CCGG | 2 cut(s) | 126, 530 |
| HphI | GGTGA | 4 cut(s) | 80, 281, 442, 553 |
| Hpy166II | GTNNAC | 1 cut(s) | 391 |
| Hpy188I | TCNGA | 2 cut(s) | 167, 337 |
| Hpy188III | TCNNGA | 1 cut(s) | 398 |
| Hpy8I | GTNNAC | 1 cut(s) | 391 |
| HpyCH4III | ACNGT | 2 cut(s) | 218, 571 |
| HpyCH4IV | ACGT | 1 cut(s) | 426 |
| HpyCH4V | TGCA | 3 cut(s) | 234, 515, 584 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 122 |
| HpyF3I | CTNAG | 5 cut(s) | 334, 399, 453, 477, 555 |
| HpySE526I | ACGT | 1 cut(s) | 426 |
| Hsp92II | CATG | 2 cut(s) | 253, 588 |
| KpnI | GGTACC | 1 cut(s) | 60 |
| KroI | GCCGGC | 1 cut(s) | 125 |
| KroNI | GCCGGC | 1 cut(s) | 127 |
| Kzo9I | GATC | 1 cut(s) | 299 |
| LguI | GCTCTTC | 1 cut(s) | 480 |
| LmnI | GCTCC | 1 cut(s) | 160 |
| Lsp1109I | GCAGC | 1 cut(s) | 10 |
| MaeI | CTAG | 3 cut(s) | 33, 75, 90 |
| MaeII | ACGT | 1 cut(s) | 426 |
| MaeIII | GTNAC | 1 cut(s) | 430 |
| MalI | GATC | 1 cut(s) | 301 |
| MboI | GATC | 1 cut(s) | 299 |
| MboII | GAAGA | 3 cut(s) | 148, 350, 497 |
| MhlI | GDGCHC | 1 cut(s) | 191 |
| MluCI | AATT | 1 cut(s) | 148 |
| MlyI | GAGTC | 1 cut(s) | 529 |
| MroNI | GCCGGC | 1 cut(s) | 125 |
| MseI | TTAA | 2 cut(s) | 147, 306 |
| MspI | CCGG | 2 cut(s) | 126, 530 |
| MspR9I | CCNGG | 2 cut(s) | 258, 279 |
| MvaI | CCWGG | 2 cut(s) | 258, 279 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 122 |
| NaeI | GCCGGC | 1 cut(s) | 127 |
| NdeII | GATC | 1 cut(s) | 299 |
| NgoMIV | GCCGGC | 1 cut(s) | 125 |
| NlaIII | CATG | 2 cut(s) | 253, 588 |
| NlaIV | GGNNCC | 4 cut(s) | 58, 156, 255, 367 |
| NmuCI | GTSAC | 1 cut(s) | 430 |
| PciSI | GCTCTTC | 1 cut(s) | 480 |
| PdiI | GCCGGC | 1 cut(s) | 127 |
| PfeI | GAWTC | 1 cut(s) | 50 |
| PfoI | TCCNGGA | 1 cut(s) | 256 |
| PkrI | GCNGC | 1 cut(s) | 25 |
| PleI | GAGTC | 1 cut(s) | 528 |
| PpsI | GAGTC | 1 cut(s) | 528 |
| Psp6I | CCWGG | 2 cut(s) | 256, 277 |
| PspGI | CCWGG | 2 cut(s) | 256, 277 |
| PspN4I | GGNNCC | 4 cut(s) | 58, 156, 255, 367 |
| PspPI | GGNCC | 2 cut(s) | 167, 366 |
| RigI | GGCCGGCC | 1 cut(s) | 129 |
| RsaI | GTAC | 1 cut(s) | 58 |
| RsaNI | GTAC | 1 cut(s) | 57 |
| SalI | GTCGAC | 1 cut(s) | 389 |
| SapI | GCTCTTC | 1 cut(s) | 480 |
| SaqAI | TTAA | 2 cut(s) | 147, 306 |
| SatI | GCNGC | 1 cut(s) | 24 |
| Sau3AI | GATC | 1 cut(s) | 299 |
| Sau96I | GGNCC | 2 cut(s) | 167, 366 |
| SchI | GAGTC | 1 cut(s) | 529 |
| ScrFI | CCNGG | 2 cut(s) | 258, 279 |
| SduI | GDGCHC | 1 cut(s) | 191 |
| SfcI | CTRYAG | 1 cut(s) | 180 |
| SinI | GGWCC | 2 cut(s) | 167, 366 |
| Sse9I | AATT | 1 cut(s) | 148 |
| SsiI | CCGC | 1 cut(s) | 38 |
| SspMI | CTAG | 3 cut(s) | 33, 75, 90 |
| StyD4I | CCNGG | 2 cut(s) | 256, 277 |
| StyI | CCWWGG | 2 cut(s) | 32, 89 |
| TaaI | ACNGT | 2 cut(s) | 218, 571 |
| TaiI | ACGT | 1 cut(s) | 429 |
| TaqI | TCGA | 1 cut(s) | 390 |
| TasI | AATT | 1 cut(s) | 148 |
| TfiI | GAWTC | 1 cut(s) | 50 |
| Tru1I | TTAA | 2 cut(s) | 147, 306 |
| Tru9I | TTAA | 2 cut(s) | 147, 306 |
| TseFI | GTSAC | 1 cut(s) | 430 |
| TseI | GCWGC | 1 cut(s) | 23 |
| Tsp45I | GTSAC | 1 cut(s) | 430 |
| TspDTI | ATGAA | 3 cut(s) | 63, 211, 238 |
| VpaK11BI | GGWCC | 2 cut(s) | 167, 366 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 424 |
| XmaJI | CCTAGG | 2 cut(s) | 32, 89 |
| XmiI | GTMKAC | 1 cut(s) | 390 |
| XspI | CTAG | 3 cut(s) | 33, 75, 90 |