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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 254 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 281 |
| AccI | GTMKAC | 1 cut(s) | 345 |
| AciI | CCGC | 5 cut(s) | 270, 291, 309, 356, 604 |
| AclWI | GGATC | 2 cut(s) | 396, 456 |
| AcoI | YGGCCR | 1 cut(s) | 571 |
| AcsI | RAATTY | 1 cut(s) | 412 |
| AcuI | CTGAAG | 1 cut(s) | 271 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 151, 187, 281 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 5 cut(s) | 37, 518, 672, 693, 716 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 364 |
| AjnI | CCWGG | 2 cut(s) | 180, 607 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 404, 436 |
| AluBI | AGCT | 3 cut(s) | 554, 668, 712 |
| AluI | AGCT | 3 cut(s) | 554, 668, 712 |
| Alw26I | GTCTC | 1 cut(s) | 527 |
| AlwI | GGATC | 2 cut(s) | 396, 456 |
| AoxI | GGCC | 7 cut(s) | 142, 178, 205, 511, 571, 605, 769 |
| ApeKI | GCWGC | 1 cut(s) | 42 |
| ApoI | RAATTY | 1 cut(s) | 412 |
| AspS9I | GGNCC | 4 cut(s) | 224, 272, 358, 769 |
| AsuC2I | CCSGG | 2 cut(s) | 50, 332 |
| AsuHPI | GGTGA | 4 cut(s) | 112, 731, 760, 802 |
| AvaII | GGWCC | 3 cut(s) | 224, 272, 358 |
| BalI | TGGCCA | 1 cut(s) | 573 |
| BanI | GGYRCC | 1 cut(s) | 254 |
| BanII | GRGCYC | 1 cut(s) | 55 |
| BbvI | GCAGC | 1 cut(s) | 29 |
| BccI | CCATC | 5 cut(s) | 260, 312, 697, 727, 736 |
| BceAI | ACGGC | 1 cut(s) | 771 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 335, 369 |
| BciT130I | CCWGG | 2 cut(s) | 182, 609 |
| BcnI | CCSGG | 2 cut(s) | 50, 332 |
| BcoDI | GTCTC | 1 cut(s) | 527 |
| BfaI | CTAG | 4 cut(s) | 149, 176, 399, 623 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BglII | AGATCT | 1 cut(s) | 406 |
| BisI | GCNGC | 3 cut(s) | 43, 310, 605 |
| BlsI | GCNGC | 3 cut(s) | 44, 311, 606 |
| Bme1390I | CCNGG | 4 cut(s) | 50, 182, 332, 609 |
| Bme18I | GGWCC | 3 cut(s) | 224, 272, 358 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 364 |
| BmgT120I | GGNCC | 4 cut(s) | 224, 272, 358, 769 |
| BmiI | GGNNCC | 2 cut(s) | 226, 256 |
| BmrFI | CCNGG | 4 cut(s) | 50, 182, 332, 609 |
| BmsI | GCATC | 1 cut(s) | 157 |
| BoxI | GACNNNNGTC | 1 cut(s) | 216 |
| BpuEI | CTTGAG | 1 cut(s) | 214 |
| BpuMI | CCSGG | 2 cut(s) | 50, 332 |
| BsaBI | GATNNNNATC | 2 cut(s) | 171, 387 |
| BsaJI | CCNNGG | 1 cut(s) | 61 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 307, 337 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 151, 187, 281 |
| Bse1I | ACTGG | 2 cut(s) | 95, 205 |
| Bse3DI | GCAATG | 1 cut(s) | 499 |
| Bse8I | GATNNNNATC | 2 cut(s) | 171, 387 |
| BseBI | CCWGG | 2 cut(s) | 182, 609 |
| BseDI | CCNNGG | 1 cut(s) | 61 |
| BseGI | GGATG | 1 cut(s) | 271 |
| BseJI | GATNNNNATC | 2 cut(s) | 171, 387 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 151, 187, 281 |
| BseMI | GCAATG | 1 cut(s) | 499 |
| BseMII | CTCAG | 1 cut(s) | 47 |
| BseNI | ACTGG | 2 cut(s) | 95, 205 |
| BseRI | GAGGAG | 2 cut(s) | 695, 752 |
| BseXI | GCAGC | 1 cut(s) | 29 |
| BshFI | GGCC | 7 cut(s) | 144, 180, 207, 513, 573, 607, 771 |
| BshNI | GGYRCC | 1 cut(s) | 254 |
| BsiSI | CCGG | 2 cut(s) | 49, 331 |
| BslFI | GGGAC | 1 cut(s) | 210 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 151, 187, 281 |
| BsmAI | GTCTC | 1 cut(s) | 527 |
| BsmFI | GGGAC | 1 cut(s) | 210 |
| BsnI | GGCC | 7 cut(s) | 144, 180, 207, 513, 573, 607, 771 |
| Bsp1286I | GDGCHC | 1 cut(s) | 55 |
| Bsp143I | GATC | 5 cut(s) | 172, 370, 388, 406, 448 |
| BspACI | CCGC | 5 cut(s) | 270, 291, 309, 356, 604 |
| BspANI | GGCC | 7 cut(s) | 144, 180, 207, 513, 573, 607, 771 |
| BspCNI | CTCAG | 1 cut(s) | 48 |
| BspLI | GGNNCC | 2 cut(s) | 226, 256 |
| BspPI | GGATC | 2 cut(s) | 396, 456 |
| BspT107I | GGYRCC | 1 cut(s) | 254 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrDI | GCAATG | 1 cut(s) | 499 |
| BsrI | ACTGG | 2 cut(s) | 95, 205 |
| BssECI | CCNNGG | 1 cut(s) | 61 |
| BssMI | GATC | 5 cut(s) | 172, 370, 388, 406, 448 |
| BssT1I | CCWWGG | 1 cut(s) | 61 |
| Bst2UI | CCWGG | 2 cut(s) | 182, 609 |
| Bst6I | CTCTTC | 2 cut(s) | 30, 672 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 498 |
| BstC8I | GCNNGC | 5 cut(s) | 146, 243, 293, 499, 525 |
| BstDEI | CTNAG | 1 cut(s) | 56 |
| BstEII | GGTNACC | 1 cut(s) | 474 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 149 |
| BstF5I | GGATG | 1 cut(s) | 271 |
| BstKTI | GATC | 5 cut(s) | 175, 373, 391, 409, 451 |
| BstMAI | GTCTC | 1 cut(s) | 527 |
| BstMBI | GATC | 5 cut(s) | 172, 370, 388, 406, 448 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 126, 247, 498 |
| BstNI | CCWGG | 2 cut(s) | 182, 609 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 216 |
| BstPI | GGTNACC | 1 cut(s) | 474 |
| BstSCI | CCNGG | 4 cut(s) | 48, 180, 330, 607 |
| BstV1I | GCAGC | 1 cut(s) | 29 |
| BstX2I | RGATCY | 3 cut(s) | 388, 406, 448 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 581 |
| BstYI | RGATCY | 3 cut(s) | 388, 406, 448 |
| BsuRI | GGCC | 7 cut(s) | 144, 180, 207, 513, 573, 607, 771 |
| BtsCI | GGATG | 1 cut(s) | 271 |
| BtsIMutI | CAGTG | 1 cut(s) | 102 |
| Cac8I | GCNNGC | 5 cut(s) | 146, 243, 293, 499, 525 |
| Cfr13I | GGNCC | 4 cut(s) | 224, 272, 358, 769 |
| CpoI | CGGWCCG | 1 cut(s) | 358 |
| CseI | GACGC | 1 cut(s) | 498 |
| CspI | CGGWCCG | 1 cut(s) | 358 |
| CviAII | CATG | 1 cut(s) | 221 |
| DdeI | CTNAG | 1 cut(s) | 56 |
| DpnI | GATC | 5 cut(s) | 174, 372, 390, 408, 450 |
| DpnII | GATC | 5 cut(s) | 172, 370, 388, 406, 448 |
| DriI | GACNNNNNGTC | 1 cut(s) | 364 |
| EaeI | YGGCCR | 1 cut(s) | 571 |
| Eam1104I | CTCTTC | 2 cut(s) | 30, 672 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 364 |
| EarI | CTCTTC | 2 cut(s) | 30, 672 |
| Eco130I | CCWWGG | 1 cut(s) | 61 |
| Eco147I | AGGCCT | 2 cut(s) | 180, 513 |
| Eco24I | GRGCYC | 1 cut(s) | 55 |
| Eco47I | GGWCC | 3 cut(s) | 224, 272, 358 |
| Eco57I | CTGAAG | 1 cut(s) | 271 |
| Eco91I | GGTNACC | 1 cut(s) | 474 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 149 |
| EcoO65I | GGTNACC | 1 cut(s) | 474 |
| EcoRII | CCWGG | 2 cut(s) | 180, 607 |
| EcoT14I | CCWWGG | 1 cut(s) | 61 |
| EcoT38I | GRGCYC | 1 cut(s) | 55 |
| ErhI | CCWWGG | 1 cut(s) | 61 |
| FaeI | CATG | 1 cut(s) | 224 |
| FaiI | YATR | 7 cut(s) | 132, 222, 354, 434, 644, 701, 806 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 498, 530, 802, 834 |
| FaqI | GGGAC | 1 cut(s) | 210 |
| FatI | CATG | 1 cut(s) | 220 |
| FauI | CCCGC | 1 cut(s) | 284 |
| FblI | GTMKAC | 1 cut(s) | 345 |
| Fnu4HI | GCNGC | 3 cut(s) | 43, 310, 605 |
| FokI | GGATG | 1 cut(s) | 278 |
| FriOI | GRGCYC | 1 cut(s) | 55 |
| Fsp4HI | GCNGC | 3 cut(s) | 43, 310, 605 |
| FspBI | CTAG | 4 cut(s) | 149, 176, 399, 623 |
| GluI | GCNGC | 3 cut(s) | 43, 310, 605 |
| HaeIII | GGCC | 7 cut(s) | 144, 180, 207, 513, 573, 607, 771 |
| HapII | CCGG | 2 cut(s) | 49, 331 |
| HgaI | GACGC | 1 cut(s) | 498 |
| Hin1II | CATG | 1 cut(s) | 224 |
| HincII | GTYRAC | 2 cut(s) | 328, 346 |
| HindII | GTYRAC | 2 cut(s) | 328, 346 |
| HindIII | AAGCTT | 3 cut(s) | 552, 666, 710 |
| HinfI | GANTC | 1 cut(s) | 365 |
| HpaII | CCGG | 2 cut(s) | 49, 331 |
| HphI | GGTGA | 4 cut(s) | 112, 731, 760, 802 |
| Hpy166II | GTNNAC | 2 cut(s) | 328, 346 |
| Hpy188I | TCNGA | 5 cut(s) | 57, 303, 370, 406, 411 |
| Hpy188III | TCNNGA | 2 cut(s) | 193, 541 |
| Hpy8I | GTNNAC | 2 cut(s) | 328, 346 |
| Hpy99I | CGWCG | 2 cut(s) | 347, 492 |
| HpyAV | CCTTC | 4 cut(s) | 465, 524, 642, 710 |
| HpyCH4IV | ACGT | 1 cut(s) | 342 |
| HpyCH4V | TGCA | 2 cut(s) | 45, 501 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 126, 247, 498 |
| HpyF3I | CTNAG | 1 cut(s) | 56 |
| HpySE526I | ACGT | 1 cut(s) | 342 |
| Hsp92II | CATG | 1 cut(s) | 224 |
| Kzo9I | GATC | 5 cut(s) | 172, 370, 388, 406, 448 |
| Lsp1109I | GCAGC | 1 cut(s) | 29 |
| LweI | GCATC | 1 cut(s) | 157 |
| MaeI | CTAG | 4 cut(s) | 149, 176, 399, 623 |
| MaeII | ACGT | 1 cut(s) | 342 |
| MaeIII | GTNAC | 3 cut(s) | 100, 474, 618 |
| MalI | GATC | 5 cut(s) | 174, 372, 390, 408, 450 |
| MboI | GATC | 5 cut(s) | 172, 370, 388, 406, 448 |
| MboII | GAAGA | 4 cut(s) | 17, 154, 689, 816 |
| MfeI | CAATTG | 2 cut(s) | 693, 780 |
| MflI | RGATCY | 3 cut(s) | 388, 406, 448 |
| MhlI | GDGCHC | 1 cut(s) | 55 |
| MlsI | TGGCCA | 1 cut(s) | 573 |
| MluCI | AATT | 4 cut(s) | 75, 412, 693, 780 |
| MluNI | TGGCCA | 1 cut(s) | 573 |
| MlyI | GAGTC | 1 cut(s) | 374 |
| Mox20I | TGGCCA | 1 cut(s) | 573 |
| MscI | TGGCCA | 1 cut(s) | 573 |
| MseI | TTAA | 2 cut(s) | 74, 90 |
| Msp20I | TGGCCA | 1 cut(s) | 573 |
| MspA1I | CMGCKG | 1 cut(s) | 291 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 2 cut(s) | 49, 331 |
| MspR9I | CCNGG | 4 cut(s) | 50, 182, 332, 609 |
| MunI | CAATTG | 2 cut(s) | 693, 780 |
| MvaI | CCWGG | 2 cut(s) | 182, 609 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 126, 247, 498 |
| NciI | CCSGG | 2 cut(s) | 50, 332 |
| NdeII | GATC | 5 cut(s) | 172, 370, 388, 406, 448 |
| NlaIII | CATG | 1 cut(s) | 224 |
| NlaIV | GGNNCC | 2 cut(s) | 226, 256 |
| NmuCI | GTSAC | 1 cut(s) | 100 |
| PceI | AGGCCT | 2 cut(s) | 180, 513 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 281 |
| PkrI | GCNGC | 3 cut(s) | 44, 311, 606 |
| PleI | GAGTC | 1 cut(s) | 373 |
| PpsI | GAGTC | 1 cut(s) | 373 |
| PshAI | GACNNNNGTC | 1 cut(s) | 216 |
| Psp6I | CCWGG | 2 cut(s) | 180, 607 |
| PspEI | GGTNACC | 1 cut(s) | 474 |
| PspGI | CCWGG | 2 cut(s) | 180, 607 |
| PspN4I | GGNNCC | 2 cut(s) | 226, 256 |
| PspPI | GGNCC | 4 cut(s) | 224, 272, 358, 769 |
| PsuI | RGATCY | 3 cut(s) | 388, 406, 448 |
| Rsr2I | CGGWCCG | 1 cut(s) | 358 |
| RsrII | CGGWCCG | 1 cut(s) | 358 |
| SalI | GTCGAC | 1 cut(s) | 344 |
| SaqAI | TTAA | 2 cut(s) | 74, 90 |
| SatI | GCNGC | 3 cut(s) | 43, 310, 605 |
| Sau3AI | GATC | 5 cut(s) | 172, 370, 388, 406, 448 |
| Sau96I | GGNCC | 4 cut(s) | 224, 272, 358, 769 |
| SchI | GAGTC | 1 cut(s) | 374 |
| ScrFI | CCNGG | 4 cut(s) | 50, 182, 332, 609 |
| SduI | GDGCHC | 1 cut(s) | 55 |
| SfaNI | GCATC | 1 cut(s) | 157 |
| SinI | GGWCC | 3 cut(s) | 224, 272, 358 |
| SmlI | CTYRAG | 2 cut(s) | 89, 193 |
| SmoI | CTYRAG | 2 cut(s) | 89, 193 |
| Sse9I | AATT | 4 cut(s) | 75, 412, 693, 780 |
| SseBI | AGGCCT | 2 cut(s) | 180, 513 |
| SsiI | CCGC | 5 cut(s) | 270, 291, 309, 356, 604 |
| SspMI | CTAG | 4 cut(s) | 149, 176, 399, 623 |
| StuI | AGGCCT | 2 cut(s) | 180, 513 |
| StyD4I | CCNGG | 4 cut(s) | 48, 180, 330, 607 |
| StyI | CCWWGG | 1 cut(s) | 61 |
| TaiI | ACGT | 1 cut(s) | 345 |
| TaqI | TCGA | 5 cut(s) | 109, 165, 345, 487, 731 |
| TaqII | GACCGA | 1 cut(s) | 375 |
| TasI | AATT | 4 cut(s) | 75, 412, 693, 780 |
| TauI | GCSGC | 2 cut(s) | 312, 607 |
| Tru1I | TTAA | 2 cut(s) | 74, 90 |
| Tru9I | TTAA | 2 cut(s) | 74, 90 |
| TscAI | CASTG | 1 cut(s) | 102 |
| TseFI | GTSAC | 1 cut(s) | 100 |
| TseI | GCWGC | 1 cut(s) | 42 |
| Tsp45I | GTSAC | 1 cut(s) | 100 |
| TspRI | CASTG | 1 cut(s) | 102 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 281 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 3 cut(s) | 224, 272, 358 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 149 |
| XapI | RAATTY | 1 cut(s) | 412 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 779 |
| XmiI | GTMKAC | 1 cut(s) | 345 |
| XspI | CTAG | 4 cut(s) | 149, 176, 399, 623 |